data_NB9
# 
_chem_comp.id                                    NB9 
_chem_comp.name                                  Lamifiban 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H28 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "({1-[N-(4-carbamimidoylbenzoyl)-L-tyrosyl]piperidin-4-yl}oxy)acetic acid" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-03-31 
_chem_comp.pdbx_modified_date                    2022-08-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.502 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NB9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7UJK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NB9 C01 C1  C 0 1 N N N 55.585 112.464 73.557 4.022  -0.156 0.110  C01 NB9 1  
NB9 C02 C2  C 0 1 N N N 55.385 110.966 73.817 2.986  -0.498 -0.965 C02 NB9 2  
NB9 C04 C3  C 0 1 N N N 53.471 110.908 72.242 3.352  1.777  -2.006 C04 NB9 3  
NB9 C05 C4  C 0 1 N N N 53.599 112.400 71.951 4.384  2.093  -0.919 C05 NB9 4  
NB9 C06 C5  C 0 1 N N N 54.878 113.041 72.384 5.066  0.797  -0.477 C06 NB9 5  
NB9 C08 C6  C 0 1 N N N 54.156 115.149 71.512 7.160  0.189  0.519  C08 NB9 6  
NB9 C09 C7  C 0 1 N N N 55.320 115.672 70.723 8.133  0.593  1.597  C09 NB9 7  
NB9 C12 C8  C 0 1 N N N 53.103 109.835 74.640 1.097  0.956  -1.522 C12 NB9 8  
NB9 C14 C9  C 0 1 N N S 51.653 109.473 74.268 0.170  -0.048 -0.885 C14 NB9 9  
NB9 C15 C10 C 0 1 N N N 50.643 110.310 75.103 0.077  -1.291 -1.772 C15 NB9 10 
NB9 C16 C11 C 0 1 Y N N 50.682 111.823 74.685 -0.743 -2.345 -1.075 C16 NB9 11 
NB9 C17 C12 C 0 1 Y N N 49.897 112.267 73.632 -0.125 -3.262 -0.243 C17 NB9 12 
NB9 C18 C13 C 0 1 Y N N 49.938 113.609 73.259 -0.875 -4.230 0.397  C18 NB9 13 
NB9 C19 C14 C 0 1 Y N N 50.764 114.500 73.942 -2.248 -4.282 0.205  C19 NB9 14 
NB9 C20 C15 C 0 1 Y N N 51.548 114.057 74.991 -2.865 -3.361 -0.629 C20 NB9 15 
NB9 C21 C16 C 0 1 Y N N 51.513 112.720 75.370 -2.112 -2.392 -1.263 C21 NB9 16 
NB9 C24 C17 C 0 1 N N N 52.309 106.950 73.978 -1.998 0.086  0.219  C24 NB9 17 
NB9 C26 C18 C 0 1 Y N N 51.930 105.485 74.314 -3.342 0.684  0.372  C26 NB9 18 
NB9 C27 C19 C 0 1 Y N N 52.876 104.450 74.311 -3.746 1.720  -0.473 C27 NB9 19 
NB9 C28 C20 C 0 1 Y N N 52.468 103.150 74.633 -4.998 2.276  -0.330 C28 NB9 20 
NB9 C29 C21 C 0 1 Y N N 51.157 102.905 74.958 -5.862 1.806  0.659  C29 NB9 21 
NB9 C30 C22 C 0 1 Y N N 50.209 103.954 74.967 -5.459 0.771  1.504  C30 NB9 22 
NB9 C31 C23 C 0 1 Y N N 50.612 105.237 74.648 -4.209 0.210  1.358  C31 NB9 23 
NB9 C32 C24 C 0 1 N N N 50.722 101.524 75.301 -7.209 2.405  0.813  C32 NB9 24 
NB9 N03 N1  N 0 1 N N N 53.953 110.531 73.627 2.429  0.752  -1.499 N03 NB9 25 
NB9 N23 N2  N 0 1 N N N 51.403 108.007 74.511 -1.161 0.545  -0.733 N23 NB9 26 
NB9 N33 N3  N 0 1 N N N 49.708 101.022 74.696 -7.585 3.370  0.025  N33 NB9 27 
NB9 N34 N4  N 0 1 N N N 51.435 100.767 76.301 -8.062 1.940  1.790  N34 NB9 28 
NB9 O07 O1  O 0 1 N N N 54.638 114.428 72.647 6.052  1.092  0.515  O07 NB9 29 
NB9 O10 O2  O 0 1 N N N 56.529 115.329 71.009 9.257  -0.116 1.787  O10 NB9 30 
NB9 O11 O3  O 0 1 N N N 55.102 116.456 69.769 7.900  1.554  2.291  O11 NB9 31 
NB9 O13 O4  O 0 1 N N N 53.514 109.575 75.670 0.644  1.946  -2.055 O13 NB9 32 
NB9 O22 O5  O 0 1 N N N 50.803 115.841 73.567 -2.987 -5.234 0.833  O22 NB9 33 
NB9 O25 O6  O 0 1 N N N 53.278 107.220 73.316 -1.648 -0.818 0.951  O25 NB9 34 
NB9 H1  H1  H 0 1 N N N 56.662 112.636 73.414 3.526  0.322  0.955  H1  NB9 35 
NB9 H2  H2  H 0 1 N N N 55.243 113.006 74.451 4.512  -1.070 0.447  H2  NB9 36 
NB9 H3  H3  H 0 1 N N N 56.021 110.399 73.121 3.465  -1.057 -1.769 H3  NB9 37 
NB9 H4  H4  H 0 1 N N N 55.686 110.745 74.852 2.189  -1.098 -0.527 H4  NB9 38 
NB9 H5  H5  H 0 1 N N N 52.413 110.623 72.150 2.794  2.681  -2.254 H5  NB9 39 
NB9 H6  H6  H 0 1 N N N 54.066 110.354 71.501 3.858  1.405  -2.896 H6  NB9 40 
NB9 H7  H7  H 0 1 N N N 53.502 112.541 70.864 5.131  2.781  -1.315 H7  NB9 41 
NB9 H8  H8  H 0 1 N N N 52.773 112.916 72.463 3.884  2.551  -0.065 H8  NB9 42 
NB9 H9  H9  H 0 1 N N N 55.570 112.979 71.531 5.544  0.327  -1.336 H9  NB9 43 
NB9 H10 H10 H 0 1 N N N 53.533 115.991 71.849 7.659  0.222  -0.450 H10 NB9 44 
NB9 H11 H11 H 0 1 N N N 53.555 114.479 70.879 6.804  -0.823 0.711  H11 NB9 45 
NB9 H12 H12 H 0 1 N N N 51.495 109.695 73.202 0.557  -0.329 0.094  H12 NB9 46 
NB9 H13 H13 H 0 1 N N N 49.629 109.918 74.938 -0.397 -1.028 -2.718 H13 NB9 47 
NB9 H14 H14 H 0 1 N N N 50.901 110.225 76.169 1.079  -1.676 -1.963 H14 NB9 48 
NB9 H15 H15 H 0 1 N N N 49.257 111.576 73.103 0.944  -3.220 -0.094 H15 NB9 49 
NB9 H16 H16 H 0 1 N N N 49.329 113.959 72.439 -0.392 -4.945 1.046  H16 NB9 50 
NB9 H17 H17 H 0 1 N N N 52.188 114.750 75.516 -3.933 -3.400 -0.780 H17 NB9 51 
NB9 H18 H18 H 0 1 N N N 52.124 112.373 76.190 -2.592 -1.672 -1.910 H18 NB9 52 
NB9 H19 H19 H 0 1 N N N 53.907 104.653 74.063 -3.077 2.084  -1.239 H19 NB9 53 
NB9 H20 H20 H 0 1 N N N 53.184 102.341 74.626 -5.311 3.077  -0.983 H20 NB9 54 
NB9 H21 H21 H 0 1 N N N 49.178 103.754 75.221 -6.128 0.408  2.270  H21 NB9 55 
NB9 H22 H22 H 0 1 N N N 49.897 106.046 74.660 -3.899 -0.594 2.008  H22 NB9 56 
NB9 H23 H23 H 0 1 N N N 50.604 107.735 75.047 -1.440 1.267  -1.318 H23 NB9 57 
NB9 H24 H24 H 0 1 N N N 49.509 100.093 75.007 -8.467 3.762  0.125  H24 NB9 58 
NB9 H25 H25 H 0 1 N N N 52.224 101.170 76.765 -7.781 1.220  2.377  H25 NB9 59 
NB9 H26 H26 H 0 1 N N N 51.141 99.839  76.530 -8.944 2.332  1.890  H26 NB9 60 
NB9 H27 H27 H 0 1 N N N 57.130 115.753 70.408 9.850  0.181  2.490  H27 NB9 61 
NB9 H28 H28 H 0 1 N N N 51.410 116.310 74.128 -3.317 -4.965 1.702  H28 NB9 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NB9 O11 C09 DOUB N N 1  
NB9 C09 O10 SING N N 2  
NB9 C09 C08 SING N N 3  
NB9 C08 O07 SING N N 4  
NB9 C05 C04 SING N N 5  
NB9 C05 C06 SING N N 6  
NB9 C04 N03 SING N N 7  
NB9 C06 O07 SING N N 8  
NB9 C06 C01 SING N N 9  
NB9 C18 C17 DOUB Y N 10 
NB9 C18 C19 SING Y N 11 
NB9 O25 C24 DOUB N N 12 
NB9 C01 C02 SING N N 13 
NB9 O22 C19 SING N N 14 
NB9 N03 C02 SING N N 15 
NB9 N03 C12 SING N N 16 
NB9 C17 C16 SING Y N 17 
NB9 C19 C20 DOUB Y N 18 
NB9 C24 C26 SING N N 19 
NB9 C24 N23 SING N N 20 
NB9 C14 N23 SING N N 21 
NB9 C14 C12 SING N N 22 
NB9 C14 C15 SING N N 23 
NB9 C27 C26 DOUB Y N 24 
NB9 C27 C28 SING Y N 25 
NB9 C26 C31 SING Y N 26 
NB9 C28 C29 DOUB Y N 27 
NB9 C12 O13 DOUB N N 28 
NB9 C31 C30 DOUB Y N 29 
NB9 C16 C15 SING N N 30 
NB9 C16 C21 DOUB Y N 31 
NB9 N33 C32 DOUB N N 32 
NB9 C29 C30 SING Y N 33 
NB9 C29 C32 SING N N 34 
NB9 C20 C21 SING Y N 35 
NB9 C32 N34 SING N N 36 
NB9 C01 H1  SING N N 37 
NB9 C01 H2  SING N N 38 
NB9 C02 H3  SING N N 39 
NB9 C02 H4  SING N N 40 
NB9 C04 H5  SING N N 41 
NB9 C04 H6  SING N N 42 
NB9 C05 H7  SING N N 43 
NB9 C05 H8  SING N N 44 
NB9 C06 H9  SING N N 45 
NB9 C08 H10 SING N N 46 
NB9 C08 H11 SING N N 47 
NB9 C14 H12 SING N N 48 
NB9 C15 H13 SING N N 49 
NB9 C15 H14 SING N N 50 
NB9 C17 H15 SING N N 51 
NB9 C18 H16 SING N N 52 
NB9 C20 H17 SING N N 53 
NB9 C21 H18 SING N N 54 
NB9 C27 H19 SING N N 55 
NB9 C28 H20 SING N N 56 
NB9 C30 H21 SING N N 57 
NB9 C31 H22 SING N N 58 
NB9 N23 H23 SING N N 59 
NB9 N33 H24 SING N N 60 
NB9 N34 H25 SING N N 61 
NB9 N34 H26 SING N N 62 
NB9 O10 H27 SING N N 63 
NB9 O22 H28 SING N N 64 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NB9 SMILES           ACDLabs              12.01 "O=C(C(Cc1ccc(O)cc1)NC(=O)c1ccc(cc1)C(=N)N)N1CCC(OCC(=O)O)CC1"                                                                                                                             
NB9 InChI            InChI                1.03  "InChI=1S/C24H28N4O6/c25-22(26)16-3-5-17(6-4-16)23(32)27-20(13-15-1-7-18(29)8-2-15)24(33)28-11-9-19(10-12-28)34-14-21(30)31/h1-8,19-20,29H,9-14H2,(H3,25,26)(H,27,32)(H,30,31)/t20-/m0/s1" 
NB9 InChIKey         InChI                1.03  FPKOGTAFKSLZLD-FQEVSTJZSA-N                                                                                                                                                                
NB9 SMILES_CANONICAL CACTVS               3.385 "NC(=N)c1ccc(cc1)C(=O)N[C@@H](Cc2ccc(O)cc2)C(=O)N3CCC(CC3)OCC(O)=O"                                                                                                                        
NB9 SMILES           CACTVS               3.385 "NC(=N)c1ccc(cc1)C(=O)N[CH](Cc2ccc(O)cc2)C(=O)N3CCC(CC3)OCC(O)=O"                                                                                                                          
NB9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\c1ccc(cc1)C(=O)N[C@@H](Cc2ccc(cc2)O)C(=O)N3CCC(CC3)OCC(=O)O)/N"                                                                                                                  
NB9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CC(C(=O)N2CCC(CC2)OCC(=O)O)NC(=O)c3ccc(cc3)C(=N)N)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
NB9 "SYSTEMATIC NAME" ACDLabs              12.01 "({1-[N-(4-carbamimidoylbenzoyl)-L-tyrosyl]piperidin-4-yl}oxy)acetic acid"                                            
NB9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[1-[(2~{S})-2-[(4-carbamimidoylphenyl)carbonylamino]-3-(4-hydroxyphenyl)propanoyl]piperidin-4-yl]oxyethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NB9 "Create component" 2022-03-31 RCSB 
NB9 "Initial release"  2022-08-17 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      NB9 
_pdbx_chem_comp_synonyms.name         "({1-[N-(4-carbamimidoylbenzoyl)-L-tyrosyl]piperidin-4-yl}oxy)acetic acid" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
