data_N39
# 
_chem_comp.id                                    N39 
_chem_comp.name                                  "O1-tert-butyl O2-ethyl O5-methyl (E,5R)-5-(1-methylindol-2-yl)-5-[(4-methylphenyl)sulfonylamino]pent-2-ene-1,2,5-tricarboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H36 N2 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "3-formyl rifamycin SV" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-11 
_chem_comp.pdbx_modified_date                    2023-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        596.691 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N39 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8ABX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N39 C10  C1  C 0 1 Y N N 21.831 29.695 15.852 2.026  -1.378 -0.268 C10  N39 1  
N39 C11  C2  C 0 1 N N R 20.587 28.866 16.232 0.612  -1.429 -0.786 C11  N39 2  
N39 C12  C3  C 0 1 N N N 20.817 27.460 15.633 0.611  -1.252 -2.283 C12  N39 3  
N39 O13  O1  O 0 1 N N N 21.356 26.434 16.438 -0.479 -0.770 -2.901 O13  N39 4  
N39 C14  C4  C 0 1 N N N 21.080 25.132 15.960 -0.409 -0.626 -4.344 C14  N39 5  
N39 C16  C5  C 0 1 N N N 20.552 28.677 17.897 -0.023 -2.774 -0.424 C16  N39 6  
N39 C17  C6  C 0 1 N N N 20.068 29.796 18.615 -1.511 -2.716 -0.606 C17  N39 7  
N39 C18  C7  C 0 1 N N N 19.419 30.967 17.892 -2.208 -1.600 -0.668 C18  N39 8  
N39 C19  C8  C 0 1 N N N 18.838 32.132 18.736 -3.665 -1.697 -0.831 C19  N39 9  
N39 C21  C9  C 0 1 N N N 18.946 33.552 20.648 -5.841 -0.740 -1.057 C21  N39 10 
N39 C22  C10 C 0 1 N N N 19.405 33.529 22.124 -6.492 0.603  -1.394 C22  N39 11 
N39 C24  C11 C 0 1 N N S 19.092 30.898 16.495 -1.589 -0.233 -0.579 C24  N39 12 
N39 C25  C12 C 0 1 N N N 19.816 32.008 15.833 -2.343 0.597  0.428  C25  N39 13 
N39 C27  C13 C 0 1 N N N 20.881 34.133 16.157 -3.471 0.892  2.507  C27  N39 14 
N39 C28  C14 C 0 1 N N N 21.978 33.931 15.073 -4.822 1.149  1.836  C28  N39 15 
N39 C29  C15 C 0 1 N N N 20.066 35.227 15.409 -2.774 2.227  2.777  C29  N39 16 
N39 C30  C16 C 0 1 N N N 20.704 34.740 17.580 -3.690 0.154  3.829  C30  N39 17 
N39 C35  C17 C 0 1 Y N N 17.767 27.795 13.803 1.227  1.982  0.116  C35  N39 18 
N39 C36  C18 C 0 1 Y N N 16.740 26.902 13.473 0.475  3.081  -0.257 C36  N39 19 
N39 C37  C19 C 0 1 Y N N 16.590 26.479 12.147 1.072  4.131  -0.929 C37  N39 20 
N39 C38  C20 C 0 1 Y N N 17.469 26.934 11.164 2.421  4.082  -1.228 C38  N39 21 
N39 C01  C21 C 0 1 N N N 21.330 30.063 13.410 1.586  -2.593 1.888  C01  N39 22 
N39 C03  C22 C 0 1 Y N N 23.341 30.870 14.680 3.795  -1.678 1.085  C03  N39 23 
N39 C04  C23 C 0 1 Y N N 24.073 31.564 13.665 4.705  -1.995 2.088  C04  N39 24 
N39 C05  C24 C 0 1 Y N N 25.292 32.176 13.978 6.026  -1.627 1.954  C05  N39 25 
N39 C06  C25 C 0 1 Y N N 25.797 32.109 15.293 6.459  -0.942 0.827  C06  N39 26 
N39 C07  C26 C 0 1 Y N N 25.078 31.428 16.288 5.582  -0.621 -0.170 C07  N39 27 
N39 C08  C27 C 0 1 Y N N 23.836 30.804 15.967 4.239  -0.984 -0.055 C08  N39 28 
N39 C09  C28 C 0 1 Y N N 22.874 30.051 16.715 3.060  -0.808 -0.907 C09  N39 29 
N39 C39  C29 C 0 1 N N N 17.337 26.477 9.692  3.072  5.226  -1.962 C39  N39 30 
N39 C40  C30 C 0 1 Y N N 18.488 27.810 11.504 3.173  2.984  -0.855 C40  N39 31 
N39 C41  C31 C 0 1 Y N N 18.637 28.257 12.818 2.575  1.933  -0.184 C41  N39 32 
N39 N02  N1  N 0 1 Y N N 22.140 30.194 14.632 2.445  -1.900 0.925  N02  N39 33 
N39 N32  N2  N 0 1 N N N 19.404 29.398 15.741 -0.187 -0.363 -0.158 N32  N39 34 
N39 O15  O2  O 0 1 N N N 20.559 27.239 14.500 1.591  -1.544 -2.926 O15  N39 35 
N39 O20  O3  O 0 1 N N N 19.243 32.282 20.088 -4.399 -0.581 -1.013 O20  N39 36 
N39 O23  O4  O 0 1 N N N 18.057 32.881 18.252 -4.209 -2.783 -0.801 O23  N39 37 
N39 O26  O5  O 0 1 N N N 20.786 32.773 16.567 -2.642 0.083  1.632  O26  N39 38 
N39 O31  O6  O 0 1 N N N 19.601 32.264 14.696 -2.678 1.724  0.153  O31  N39 39 
N39 O34  O7  O 0 1 N N N 18.020 27.229 16.461 1.518  -0.078 1.602  O34  N39 40 
N39 O42  O8  O 0 1 N N N 16.758 29.046 15.994 -0.625 1.204  1.698  O42  N39 41 
N39 S33  S1  S 0 1 N N N 17.983 28.373 15.544 0.467  0.647  0.979  S33  N39 42 
N39 H142 H1  H 0 0 N N N 21.530 24.390 16.636 0.401  0.057  -4.602 H142 N39 43 
N39 H143 H2  H 0 0 N N N 19.991 24.979 15.920 -0.222 -1.599 -4.797 H143 N39 44 
N39 H141 H3  H 0 0 N N N 21.504 25.014 14.952 -1.353 -0.227 -4.715 H141 N39 45 
N39 H162 H4  H 0 0 N N N 19.907 27.817 18.129 0.389  -3.552 -1.066 H162 N39 46 
N39 H161 H5  H 0 0 N N N 21.577 28.469 18.239 0.203  -3.011 0.616  H161 N39 47 
N39 H171 H6  H 0 0 N N N 20.160 29.819 19.691 -2.046 -3.650 -0.693 H171 N39 48 
N39 H212 H7  H 0 0 N N N 17.864 33.742 20.594 -6.199 -1.083 -0.086 H212 N39 49 
N39 H211 H8  H 0 0 N N N 19.484 34.339 20.100 -6.103 -1.472 -1.821 H211 N39 50 
N39 H222 H9  H 0 0 N N N 19.189 34.501 22.591 -7.567 0.466  -1.514 H222 N39 51 
N39 H223 H10 H 0 0 N N N 18.866 32.736 22.663 -6.305 1.311  -0.586 H223 N39 52 
N39 H221 H11 H 0 0 N N N 20.486 33.333 22.169 -6.069 0.990  -2.321 H221 N39 53 
N39 H241 H12 H 0 0 N N N 18.013 31.073 16.375 -1.633 0.251  -1.555 H241 N39 54 
N39 H283 H14 H 0 0 N N N 22.692 33.165 15.411 -4.666 1.675  0.895  H283 N39 55 
N39 H281 H15 H 0 0 N N N 21.509 33.605 14.133 -5.319 0.198  1.644  H281 N39 56 
N39 H282 H16 H 0 0 N N N 22.509 34.880 14.908 -5.444 1.757  2.493  H282 N39 57 
N39 H292 H17 H 0 0 N N N 19.205 35.529 16.024 -3.396 2.835  3.434  H292 N39 58 
N39 H293 H18 H 0 0 N N N 20.708 36.101 15.224 -1.811 2.045  3.255  H293 N39 59 
N39 H291 H19 H 0 0 N N N 19.708 34.826 14.449 -2.618 2.753  1.836  H291 N39 60 
N39 H301 H20 H 0 0 N N N 19.662 34.609 17.908 -4.105 -0.833 3.629  H301 N39 61 
N39 H302 H21 H 0 0 N N N 21.377 34.228 18.283 -2.737 0.049  4.348  H302 N39 62 
N39 H303 H22 H 0 0 N N N 20.948 35.812 17.554 -4.382 0.721  4.451  H303 N39 63 
N39 H361 H23 H 0 0 N N N 16.067 26.542 14.237 -0.578 3.119  -0.023 H361 N39 64 
N39 H371 H24 H 0 0 N N N 15.793 25.799 11.885 0.485  4.989  -1.220 H371 N39 65 
N39 H013 H25 H 0 0 N N N 21.838 30.571 12.577 1.556  -3.656 1.650  H013 N39 66 
N39 H011 H26 H 0 0 N N N 21.203 28.998 13.167 1.985  -2.457 2.894  H011 N39 67 
N39 H012 H27 H 0 0 N N N 20.344 30.522 13.573 0.578  -2.181 1.838  H012 N39 68 
N39 H041 H28 H 0 0 N N N 23.685 31.615 12.658 4.377  -2.527 2.969  H041 N39 69 
N39 H051 H29 H 0 0 N N N 25.846 32.699 13.213 6.731  -1.874 2.734  H051 N39 70 
N39 H061 H30 H 0 0 N N N 26.737 32.582 15.535 7.498  -0.661 0.738  H061 N39 71 
N39 H071 H31 H 0 0 N N N 25.465 31.377 17.295 5.926  -0.087 -1.043 H071 N39 72 
N39 H091 H32 H 0 0 N N N 22.942 29.801 17.764 3.029  -0.313 -1.866 H091 N39 73 
N39 H392 H33 H 0 0 N N N 16.678 27.171 9.150  3.445  5.954  -1.241 H392 N39 74 
N39 H391 H34 H 0 0 N N N 18.330 26.471 9.220  3.902  4.849  -2.560 H391 N39 75 
N39 H393 H35 H 0 0 N N N 16.909 25.464 9.660  2.341  5.702  -2.615 H393 N39 76 
N39 H401 H36 H 0 0 N N N 19.175 28.151 10.743 4.226  2.945  -1.089 H401 N39 77 
N39 H411 H37 H 0 0 N N N 19.421 28.956 13.069 3.162  1.074  0.107  H411 N39 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N39 C10 C11  SING N N 1  
N39 C10 C09  DOUB Y N 2  
N39 C10 N02  SING Y N 3  
N39 C11 C12  SING N N 4  
N39 C11 C16  SING N N 5  
N39 C11 N32  SING N N 6  
N39 C12 O13  SING N N 7  
N39 C12 O15  DOUB N N 8  
N39 O13 C14  SING N N 9  
N39 C16 C17  SING N N 10 
N39 C17 C18  DOUB N N 11 
N39 C18 C19  SING N N 12 
N39 C18 C24  SING N N 13 
N39 C19 O20  SING N N 14 
N39 C19 O23  DOUB N N 15 
N39 C21 C22  SING N N 16 
N39 C21 O20  SING N N 17 
N39 C24 C25  SING N N 18 
N39 C25 O26  SING N N 19 
N39 C25 O31  DOUB N N 20 
N39 C27 C28  SING N N 21 
N39 C27 C29  SING N N 22 
N39 C27 C30  SING N N 23 
N39 C27 O26  SING N N 24 
N39 C35 C36  DOUB Y N 25 
N39 C35 C41  SING Y N 26 
N39 C35 S33  SING N N 27 
N39 C36 C37  SING Y N 28 
N39 C37 C38  DOUB Y N 29 
N39 C38 C39  SING N N 30 
N39 C38 C40  SING Y N 31 
N39 C01 N02  SING N N 32 
N39 C03 C04  DOUB Y N 33 
N39 C03 C08  SING Y N 34 
N39 C03 N02  SING Y N 35 
N39 C04 C05  SING Y N 36 
N39 C05 C06  DOUB Y N 37 
N39 C06 C07  SING Y N 38 
N39 C07 C08  DOUB Y N 39 
N39 C08 C09  SING Y N 40 
N39 C40 C41  DOUB Y N 41 
N39 N32 S33  SING N N 42 
N39 O34 S33  DOUB N N 43 
N39 O42 S33  DOUB N N 44 
N39 C14 H142 SING N N 45 
N39 C14 H143 SING N N 46 
N39 C14 H141 SING N N 47 
N39 C16 H162 SING N N 48 
N39 C16 H161 SING N N 49 
N39 C17 H171 SING N N 50 
N39 C21 H212 SING N N 51 
N39 C21 H211 SING N N 52 
N39 C22 H222 SING N N 53 
N39 C22 H223 SING N N 54 
N39 C22 H221 SING N N 55 
N39 C24 H241 SING N N 56 
N39 C28 H283 SING N N 57 
N39 C28 H281 SING N N 58 
N39 C28 H282 SING N N 59 
N39 C29 H292 SING N N 60 
N39 C29 H293 SING N N 61 
N39 C29 H291 SING N N 62 
N39 C30 H301 SING N N 63 
N39 C30 H302 SING N N 64 
N39 C30 H303 SING N N 65 
N39 C36 H361 SING N N 66 
N39 C37 H371 SING N N 67 
N39 C01 H013 SING N N 68 
N39 C01 H011 SING N N 69 
N39 C01 H012 SING N N 70 
N39 C04 H041 SING N N 71 
N39 C05 H051 SING N N 72 
N39 C06 H061 SING N N 73 
N39 C07 H071 SING N N 74 
N39 C09 H091 SING N N 75 
N39 C39 H392 SING N N 76 
N39 C39 H391 SING N N 77 
N39 C39 H393 SING N N 78 
N39 C40 H401 SING N N 79 
N39 C41 H411 SING N N 80 
N39 N32 C24  SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N39 InChI            InChI                1.06  "InChI=1S/C31H36N2O8S/c1-8-40-27(34)23-17-18-31(29(36)39-7,25-19-21-11-9-10-12-24(21)32(25)6)33(26(23)28(35)41-30(3,4)5)42(37,38)22-15-13-20(2)14-16-22/h9-17,19,26H,8,18H2,1-7H3/t26-,31+/m0/s1" 
N39 InChIKey         InChI                1.06  FUSYRUNCXNWFDD-SUYBVONHSA-N                                                                                                                                                                       
N39 SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)C1=CC[C@](N([C@@H]1C(=O)OC(C)(C)C)[S](=O)(=O)c2ccc(C)cc2)(C(=O)OC)c3cc4ccccc4n3C"                                                                                                        
N39 SMILES           CACTVS               3.385 "CCOC(=O)C1=CC[C](N([CH]1C(=O)OC(C)(C)C)[S](=O)(=O)c2ccc(C)cc2)(C(=O)OC)c3cc4ccccc4n3C"                                                                                                           
N39 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C1=CC[C@@](N([C@@H]1C(=O)OC(C)(C)C)S(=O)(=O)c2ccc(cc2)C)(c3cc4ccccc4n3C)C(=O)OC"                                                                                                         
N39 SMILES           "OpenEye OEToolkits" 2.0.7 "CCOC(=O)C1=CCC(N(C1C(=O)OC(C)(C)C)S(=O)(=O)c2ccc(cc2)C)(c3cc4ccccc4n3C)C(=O)OC"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           N39 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{O}2-~{tert}-butyl ~{O}3-ethyl ~{O}6-methyl (2~{S},6~{R})-6-(1-methylindol-2-yl)-1-(4-methylphenyl)sulfonyl-2,5-dihydropyridine-2,3,6-tricarboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N39 "Create component"  2022-08-11 PDBE 
N39 "Initial release"   2022-08-24 RCSB 
N39 "Modify descriptor" 2023-09-23 RCSB 
# 
