data_MX9
# 
_chem_comp.id                                    MX9 
_chem_comp.name                                  "(3-methylphenyl)methyl (3R)-3-hydroxy-2-oxo-2,3-dihydro-1H-indole-7-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H15 N O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        297.305 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MX9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GDR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MX9 C4  C1  C 0 1 N N N N N N 5.438  0.565  25.552 -2.182 1.277  0.106  C4  MX9 1  
MX9 C5  C2  C 0 1 N N N N N N 6.053  -0.837 23.737 0.107  0.600  0.115  C5  MX9 2  
MX9 C6  C3  C 0 1 Y N N N N N 7.250  -1.411 23.066 1.174  -0.413 0.195  C6  MX9 3  
MX9 C7  C4  C 0 1 Y N N N N N 7.184  -2.405 22.071 2.525  -0.024 0.120  C7  MX9 4  
MX9 C8  C5  C 0 1 N N N N N N 6.453  -3.899 20.551 4.444  1.176  -0.057 C8  MX9 5  
MX9 C10 C6  C 0 1 Y N N N N N 8.346  -2.884 21.470 3.509  -1.001 0.205  C10 MX9 6  
MX9 C13 C7  C 0 1 Y N N N N N 8.504  -0.925 23.439 0.849  -1.762 0.351  C13 MX9 7  
MX9 C15 C8  C 0 1 Y N N N N N 8.326  0.651  27.992 -5.420 -0.028 1.544  C15 MX9 8  
MX9 O2  O1  O 0 1 N N N N N N 5.696  -4.540 19.837 5.201  2.116  -0.178 O2  MX9 9  
MX9 N   N1  N 0 1 N N N N N N 6.087  -3.015 21.509 3.101  1.230  -0.031 N   MX9 10 
MX9 C9  C9  C 0 1 N N R N N N 7.970  -3.964 20.478 4.832  -0.280 0.094  C9  MX9 11 
MX9 O3  O2  O 0 1 N N N N N N 8.380  -5.194 21.056 5.553  -0.728 -1.056 O3  MX9 12 
MX9 C11 C10 C 0 1 Y N N N N N 9.581  -2.367 21.842 3.176  -2.327 0.357  C11 MX9 13 
MX9 C12 C11 C 0 1 Y N N N N N 9.656  -1.397 22.829 1.845  -2.711 0.427  C12 MX9 14 
MX9 O1  O3  O 0 1 N N N N N N 4.942  -1.293 23.656 0.392  1.773  -0.021 O1  MX9 15 
MX9 O   O4  O 0 1 N N N N N N 6.368  0.228  24.481 -1.185 0.225  0.192  O   MX9 16 
MX9 C3  C12 C 0 1 Y N N N N N 6.261  0.863  26.771 -3.559 0.673  0.211  C3  MX9 17 
MX9 C2  C13 C 0 1 Y N N N N N 5.806  1.750  27.742 -4.229 0.277  -0.932 C2  MX9 18 
MX9 C14 C14 C 0 1 Y N N N N N 7.528  0.313  26.912 -4.157 0.526  1.448  C14 MX9 19 
MX9 C16 C15 C 0 1 Y N N N N N 7.863  1.551  28.937 -6.085 -0.435 0.402  C16 MX9 20 
MX9 C1  C16 C 0 1 Y N N N N N 6.600  2.120  28.821 -5.490 -0.282 -0.836 C1  MX9 21 
MX9 C   C17 C 0 1 N N N N N N 6.132  3.168  29.800 -6.220 -0.713 -2.082 C   MX9 22 
MX9 H1  H1  H 0 1 N N N N N N 4.844  1.448  25.272 -2.034 1.986  0.920  H1  MX9 23 
MX9 H2  H2  H 0 1 N N N N N N 4.765  -0.283 25.749 -2.084 1.794  -0.848 H2  MX9 24 
MX9 H3  H3  H 0 1 N N N N N N 8.578  -0.173 24.211 -0.187 -2.062 0.412  H3  MX9 25 
MX9 H4  H4  H 0 1 N N N N N N 9.308  0.213  28.097 -5.885 -0.148 2.511  H4  MX9 26 
MX9 H5  H5  H 0 1 N N N N N N 5.141  -2.830 21.774 2.592  2.052  -0.109 H5  MX9 27 
MX9 H6  H6  H 0 1 N N N N N N 8.361  -3.777 19.467 5.426  -0.425 0.997  H6  MX9 28 
MX9 H7  H7  H 0 1 N N N N N N 9.327  -5.260 21.023 6.382  -0.254 -1.209 H7  MX9 29 
MX9 H8  H8  H 0 1 N N N N N N 10.482 -2.721 21.362 3.955  -3.073 0.421  H8  MX9 30 
MX9 H9  H9  H 0 1 N N N N N N 10.618 -1.006 23.125 1.589  -3.753 0.547  H9  MX9 31 
MX9 H10 H10 H 0 1 N N N N N N 4.811  2.161  27.655 -3.766 0.401  -1.900 H10 MX9 32 
MX9 H11 H11 H 0 1 N N N N N N 7.894  -0.384 26.173 -3.638 0.843  2.340  H11 MX9 33 
MX9 H12 H12 H 0 1 N N N N N N 8.491  1.814  29.775 -7.070 -0.872 0.478  H12 MX9 34 
MX9 H13 H13 H 0 1 N N N N N N 5.601  2.682  30.632 -5.975 -1.752 -2.305 H13 MX9 35 
MX9 H14 H14 H 0 1 N N N N N N 7.001  3.719  30.191 -7.294 -0.618 -1.924 H14 MX9 36 
MX9 H15 H15 H 0 1 N N N N N N 5.453  3.868  29.291 -5.918 -0.081 -2.917 H15 MX9 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MX9 O2  C8  DOUB N N 1  
MX9 C9  C8  SING N N 2  
MX9 C9  O3  SING N N 3  
MX9 C9  C10 SING N N 4  
MX9 C8  N   SING N N 5  
MX9 C10 C11 DOUB Y N 6  
MX9 C10 C7  SING Y N 7  
MX9 N   C7  SING N N 8  
MX9 C11 C12 SING Y N 9  
MX9 C7  C6  DOUB Y N 10 
MX9 C12 C13 DOUB Y N 11 
MX9 C6  C13 SING Y N 12 
MX9 C6  C5  SING N N 13 
MX9 O1  C5  DOUB N N 14 
MX9 C5  O   SING N N 15 
MX9 O   C4  SING N N 16 
MX9 C4  C3  SING N N 17 
MX9 C3  C14 DOUB Y N 18 
MX9 C3  C2  SING Y N 19 
MX9 C14 C15 SING Y N 20 
MX9 C2  C1  DOUB Y N 21 
MX9 C15 C16 DOUB Y N 22 
MX9 C1  C16 SING Y N 23 
MX9 C1  C   SING N N 24 
MX9 C4  H1  SING N N 25 
MX9 C4  H2  SING N N 26 
MX9 C13 H3  SING N N 27 
MX9 C15 H4  SING N N 28 
MX9 N   H5  SING N N 29 
MX9 C9  H6  SING N N 30 
MX9 O3  H7  SING N N 31 
MX9 C11 H8  SING N N 32 
MX9 C12 H9  SING N N 33 
MX9 C2  H10 SING N N 34 
MX9 C14 H11 SING N N 35 
MX9 C16 H12 SING N N 36 
MX9 C   H13 SING N N 37 
MX9 C   H14 SING N N 38 
MX9 C   H15 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MX9 SMILES           ACDLabs              12.01 "Cc1cccc(c1)COC(=O)c1cccc2c1NC(=O)C2O"                                                                                           
MX9 InChI            InChI                1.06  "InChI=1S/C17H15NO4/c1-10-4-2-5-11(8-10)9-22-17(21)13-7-3-6-12-14(13)18-16(20)15(12)19/h2-8,15,19H,9H2,1H3,(H,18,20)/t15-/m1/s1" 
MX9 InChIKey         InChI                1.06  BWTXNZHOZOMCDB-OAHLLOKOSA-N                                                                                                      
MX9 SMILES_CANONICAL CACTVS               3.385 "Cc1cccc(COC(=O)c2cccc3[C@@H](O)C(=O)Nc23)c1"                                                                                    
MX9 SMILES           CACTVS               3.385 "Cc1cccc(COC(=O)c2cccc3[CH](O)C(=O)Nc23)c1"                                                                                      
MX9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1)COC(=O)c2cccc3c2NC(=O)[C@@H]3O"                                                                                      
MX9 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cccc(c1)COC(=O)c2cccc3c2NC(=O)C3O"                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MX9 "SYSTEMATIC NAME" ACDLabs              12.01 "(3-methylphenyl)methyl (3R)-3-hydroxy-2-oxo-2,3-dihydro-1H-indole-7-carboxylate"           
MX9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3-methylphenyl)methyl (3~{R})-3-oxidanyl-2-oxidanylidene-1,3-dihydroindole-7-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MX9 "Create component" 2023-08-16 RCSB 
MX9 "Initial release"  2023-11-08 RCSB 
MX9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            MX9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C9 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
