data_MT9
#

_chem_comp.id                                   MT9
_chem_comp.name                                 "(3R,4S,5S,7R,9E,11S,12R)-12-ethyl-11-hydroxy-3,5,7,11-tetramethyl-2,8-dioxooxacyclododec-9-en-4-yl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H43 N O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        methymycin
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-04-22
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       469.611
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MT9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3FWO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MT9  C4    C4    C  0  1  N  N  S  50.585  123.848  116.330   4.149  -1.021   0.892  C4    MT9   1  
MT9  C3    C3    C  0  1  N  N  R  51.707  124.753  117.044   3.087  -1.753   0.064  C3    MT9   2  
MT9  O3    O3    O  0  1  N  N  N  52.918  124.005  117.318   2.280  -0.786  -0.657  O3    MT9   3  
MT9  C13   C13   C  0  1  N  N  N  53.798  124.119  116.224   1.699  -1.179  -1.796  C13   MT9   4  
MT9  O2    O2    O  0  1  N  N  N  53.553  124.780  115.221   1.798  -2.337  -2.147  O2    MT9   5  
MT9  C5    C5    C  0  1  N  N  N  51.185  123.251  115.015   3.476   0.074   1.685  C5    MT9   6  
MT9  C12   C12   C  0  1  N  N  R  55.083  123.308  116.398   0.941  -0.217  -2.670  C12   MT9   7  
MT9  C11   C11   C  0  1  N  N  S  56.019  123.342  115.103  -0.001   0.663  -1.863  C11   MT9   8  
MT9  C10   C10   C  0  1  N  N  S  55.358  122.552  113.816   0.677   1.881  -1.250  C10   MT9   9  
MT9  C9    C9    C  0  1  N  N  N  54.021  123.189  113.208   0.222   2.077   0.200  C9    MT9  10  
MT9  C8    C8    C  0  1  N  N  R  52.869  122.337  112.499   1.204   2.996   0.935  C8    MT9  11  
MT9  C7    C7    C  0  1  N  N  N  52.013  121.382  113.402   2.158   2.130   1.726  C7    MT9  12  
MT9  C6    C6    C  0  1  N  N  N  51.232  121.925  114.653   2.868   1.061   1.031  C6    MT9  13  
MT9  O1    O1    O  0  1  N  N  N  51.962  120.205  113.147   2.322   2.326   2.908  O1    MT9  14  
MT9  O7    O7    O  0  1  N  N  N  49.478  124.701  116.045   5.129  -0.453   0.024  O7    MT9  15  
MT9  C25   C25   C  0  1  N  N  N  50.065  122.745  117.250   4.816  -2.011   1.847  C25   MT9  16  
MT9  C2    C2    C  0  1  N  N  N  51.219  125.362  118.364   2.192  -2.569   0.999  C2    MT9  17  
MT9  C24   C24   C  0  1  N  N  N  53.503  121.550  111.356   0.431   3.902   1.894  C24   MT9  18  
MT9  C23   C23   C  0  1  N  N  N  55.183  121.065  114.202   0.274   3.130  -2.050  C23   MT9  19  
MT9  O4    O4    O  0  1  N  N  N  57.213  122.642  115.501  -0.624  -0.124  -0.843  O4    MT9  20  
MT9  C14   C14   C  0  1  N  N  N  55.806  123.982  117.554   1.907   0.595  -3.527  C14   MT9  21  
MT9  C16   C16   C  0  1  N  N  R  58.827  124.058  114.280  -2.606  -1.084   0.157  C16   MT9  22  
MT9  C15   C15   C  0  1  N  N  S  58.302  122.609  114.529  -2.052  -0.126  -0.902  C15   MT9  23  
MT9  O5    O5    O  0  1  N  N  N  59.217  121.865  115.318  -2.542   1.193  -0.652  O5    MT9  24  
MT9  C19   C19   C  0  1  N  N  R  60.453  121.683  114.619  -3.965   1.309  -0.713  C19   MT9  25  
MT9  C18   C18   C  0  1  N  N  N  61.138  123.057  114.449  -4.595   0.409   0.353  C18   MT9  26  
MT9  C17   C17   C  0  1  N  N  S  60.250  124.034  113.601  -4.136  -1.035   0.128  C17   MT9  27  
MT9  O6    O6    O  0  1  N  N  N  57.876  124.732  113.442  -2.165  -2.413  -0.124  O6    MT9  28  
MT9  N1    N1    N  0  1  N  N  N  60.909  125.418  113.578  -4.676  -1.893   1.191  N1    MT9  29  
MT9  C20   C20   C  0  1  N  N  N  61.341  120.766  115.442  -4.370   2.762  -0.459  C20   MT9  30  
MT9  C21   C21   C  0  1  N  N  N  62.222  125.353  112.947  -4.433  -1.306   2.516  C21   MT9  31  
MT9  C22   C22   C  0  1  N  N  N  60.156  126.382  112.791  -6.107  -2.151   0.984  C22   MT9  32  
MT9  C1    C1    C  0  1  N  N  N  52.327  126.204  119.007   1.222  -3.413   0.169  C1    MT9  33  
MT9  H3    H3    H  0  1  N  N  N  51.920  125.559  116.327   3.576  -2.420  -0.645  H3    MT9  34  
MT9  H5    H5    H  0  1  N  N  N  51.608  123.956  114.315   3.496   0.049   2.763  H5    MT9  35  
MT9  H12   H12   H  0  1  N  N  N  54.848  122.248  116.573   0.324  -0.824  -3.362  H12   MT9  36  
MT9  H11   H11   H  0  1  N  N  N  56.185  124.381  114.781  -0.800   1.016  -2.537  H11   MT9  37  
MT9  H10   H10   H  0  1  N  N  N  56.063  122.661  112.978   1.757   1.780  -1.265  H10   MT9  38  
MT9  H9    H9    H  0  1  N  N  N  53.527  123.678  114.061  -0.772   2.519   0.216  H9    MT9  39  
MT9  H9A   H9A   H  0  1  N  N  N  54.419  123.768  112.361   0.202   1.116   0.714  H9A   MT9  40  
MT9  H8    H8    H  0  1  N  N  N  52.130  123.078  112.161   1.764   3.598   0.228  H8    MT9  41  
MT9  H6    H6    H  0  1  N  N  N  50.699  121.213  115.266   2.925   1.087  -0.053  H6    MT9  42  
MT9  HO7   HO7   H  0  1  N  N  N  49.009  124.891  116.849   5.832   0.025   0.484  HO7   MT9  43  
MT9  H25   H25   H  0  1  N  N  N  49.940  121.816  116.675   5.288  -2.808   1.273  H25   MT9  44  
MT9  H25A  H25A  H  0  0  N  N  N  50.785  122.578  118.065   5.572  -1.492   2.438  H25A  MT9  45  
MT9  H25B  H25B  H  0  0  N  N  N  49.096  123.047  117.673   4.065  -2.437   2.513  H25B  MT9  46  
MT9  H2    H2    H  0  1  N  N  N  50.348  126.003  118.165   2.809  -3.225   1.613  H2    MT9  47  
MT9  H2A   H2A   H  0  1  N  N  N  50.944  124.549  119.052   1.627  -1.894   1.643  H2A   MT9  48  
MT9  H24   H24   H  0  1  N  N  N  53.656  122.215  110.493  -0.106   3.290   2.619  H24   MT9  49  
MT9  H24A  H24A  H  0  0  N  N  N  54.472  121.146  111.683   1.129   4.557   2.417  H24A  MT9  50  
MT9  H24B  H24B  H  0  0  N  N  N  52.838  120.722  111.068  -0.280   4.506   1.330  H24B  MT9  51  
MT9  H23   H23   H  0  1  N  N  N  55.141  120.451  113.290  -0.808   3.252  -2.013  H23   MT9  52  
MT9  H23A  H23A  H  0  0  N  N  N  56.034  120.744  114.821   0.754   4.008  -1.619  H23A  MT9  53  
MT9  H23B  H23B  H  0  0  N  N  N  54.249  120.941  114.770   0.591   3.015  -3.087  H23B  MT9  54  
MT9  H14   H14   H  0  1  N  N  N  56.860  124.145  117.283   2.487  -0.078  -4.158  H14   MT9  55  
MT9  H14A  H14A  H  0  0  N  N  N  55.329  124.950  117.770   1.344   1.286  -4.153  H14A  MT9  56  
MT9  H14B  H14B  H  0  0  N  N  N  55.752  123.339  118.445   2.581   1.157  -2.880  H14B  MT9  57  
MT9  H16   H16   H  0  1  N  N  N  58.935  124.589  115.237  -2.250  -0.782   1.142  H16   MT9  58  
MT9  H15   H15   H  0  1  N  N  N  58.081  122.208  113.529  -2.375  -0.453  -1.891  H15   MT9  59  
MT9  H19   H19   H  0  1  N  N  N  60.276  121.239  113.629  -4.312   1.001  -1.699  H19   MT9  60  
MT9  H18   H18   H  0  1  N  N  N  61.303  123.498  115.443  -4.280   0.741   1.343  H18   MT9  61  
MT9  H18A  H18A  H  0  0  N  N  N  62.093  122.908  113.923  -5.681   0.462   0.279  H18A  MT9  62  
MT9  H17   H17   H  0  1  N  N  N  60.148  123.711  112.555  -4.494  -1.384  -0.841  H17   MT9  63  
MT9  HO6   HO6   H  0  1  N  N  N  57.074  124.881  113.929  -1.223  -2.558   0.039  HO6   MT9  64  
MT9  H20   H20   H  0  1  N  N  N  61.556  119.852  114.869  -3.920   3.402  -1.218  H20   MT9  65  
MT9  H20A  H20A  H  0  0  N  N  N  62.284  121.282  115.676  -5.455   2.850  -0.506  H20A  MT9  66  
MT9  H20B  H20B  H  0  0  N  N  N  60.826  120.500  116.377  -4.022   3.069   0.527  H20B  MT9  67  
MT9  H21   H21   H  0  1  N  N  N  62.103  125.337  111.854  -4.916  -0.331   2.575  H21   MT9  68  
MT9  H21A  H21A  H  0  0  N  N  N  62.813  126.234  113.238  -4.842  -1.962   3.284  H21A  MT9  69  
MT9  H21B  H21B  H  0  0  N  N  N  62.740  124.439  113.273  -3.360  -1.190   2.671  H21B  MT9  70  
MT9  H22   H22   H  0  1  N  N  N  59.966  127.281  113.396  -6.249  -2.668   0.035  H22   MT9  71  
MT9  H22A  H22A  H  0  0  N  N  N  60.735  126.657  111.897  -6.485  -2.772   1.796  H22A  MT9  72  
MT9  H22B  H22B  H  0  0  N  N  N  59.198  125.937  112.485  -6.648  -1.205   0.968  H22B  MT9  73  
MT9  H1    H1    H  0  1  N  N  N  53.113  126.406  118.264   0.650  -2.763  -0.493  H1    MT9  74  
MT9  H1A   H1A   H  0  1  N  N  N  51.905  127.156  119.362   1.784  -4.133  -0.426  H1A   MT9  75  
MT9  H1B   H1B   H  0  1  N  N  N  52.758  125.655  119.857   0.541  -3.944   0.835  H1B   MT9  76  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MT9  C4   C3    SING  N  N   1  
MT9  C4   C5    SING  N  N   2  
MT9  C4   O7    SING  N  N   3  
MT9  C4   C25   SING  N  N   4  
MT9  C3   O3    SING  N  N   5  
MT9  C3   C2    SING  N  N   6  
MT9  O3   C13   SING  N  N   7  
MT9  C13  O2    DOUB  N  N   8  
MT9  C13  C12   SING  N  N   9  
MT9  C5   C6    DOUB  N  N  10  
MT9  C12  C11   SING  N  E  11  
MT9  C12  C14   SING  N  N  12  
MT9  C11  C10   SING  N  N  13  
MT9  C11  O4    SING  N  N  14  
MT9  C10  C9    SING  N  N  15  
MT9  C10  C23   SING  N  N  16  
MT9  C9   C8    SING  N  N  17  
MT9  C8   C7    SING  N  N  18  
MT9  C8   C24   SING  N  N  19  
MT9  C7   C6    SING  N  N  20  
MT9  C7   O1    DOUB  N  N  21  
MT9  C2   C1    SING  N  N  22  
MT9  O4   C15   SING  N  N  23  
MT9  C16  C15   SING  N  N  24  
MT9  C16  C17   SING  N  N  25  
MT9  C16  O6    SING  N  N  26  
MT9  C15  O5    SING  N  N  27  
MT9  O5   C19   SING  N  N  28  
MT9  C19  C18   SING  N  N  29  
MT9  C19  C20   SING  N  N  30  
MT9  C18  C17   SING  N  N  31  
MT9  C17  N1    SING  N  N  32  
MT9  N1   C21   SING  N  N  33  
MT9  N1   C22   SING  N  N  34  
MT9  C3   H3    SING  N  N  35  
MT9  C5   H5    SING  N  N  36  
MT9  C12  H12   SING  N  N  37  
MT9  C11  H11   SING  N  N  38  
MT9  C10  H10   SING  N  N  39  
MT9  C9   H9    SING  N  N  40  
MT9  C9   H9A   SING  N  N  41  
MT9  C8   H8    SING  N  N  42  
MT9  C6   H6    SING  N  N  43  
MT9  O7   HO7   SING  N  N  44  
MT9  C25  H25   SING  N  N  45  
MT9  C25  H25A  SING  N  N  46  
MT9  C25  H25B  SING  N  N  47  
MT9  C2   H2    SING  N  N  48  
MT9  C2   H2A   SING  N  N  49  
MT9  C24  H24   SING  N  N  50  
MT9  C24  H24A  SING  N  N  51  
MT9  C24  H24B  SING  N  N  52  
MT9  C23  H23   SING  N  N  53  
MT9  C23  H23A  SING  N  N  54  
MT9  C23  H23B  SING  N  N  55  
MT9  C14  H14   SING  N  N  56  
MT9  C14  H14A  SING  N  N  57  
MT9  C14  H14B  SING  N  N  58  
MT9  C16  H16   SING  N  N  59  
MT9  C15  H15   SING  N  N  60  
MT9  C19  H19   SING  N  N  61  
MT9  C18  H18   SING  N  N  62  
MT9  C18  H18A  SING  N  N  63  
MT9  C17  H17   SING  N  N  64  
MT9  O6   HO6   SING  N  N  65  
MT9  C20  H20   SING  N  N  66  
MT9  C20  H20A  SING  N  N  67  
MT9  C20  H20B  SING  N  N  68  
MT9  C21  H21   SING  N  N  69  
MT9  C21  H21A  SING  N  N  70  
MT9  C21  H21B  SING  N  N  71  
MT9  C22  H22   SING  N  N  72  
MT9  C22  H22A  SING  N  N  73  
MT9  C22  H22B  SING  N  N  74  
MT9  C1   H1    SING  N  N  75  
MT9  C1   H1A   SING  N  N  76  
MT9  C1   H1B   SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MT9  SMILES            ACDLabs               10.04  "O=C2OC(CC)C(O)(C=CC(=O)C(C)CC(C(OC1OC(CC(N(C)C)C1O)C)C2C)C)C"  
MT9  SMILES_CANONICAL  CACTVS                3.341  "CC[C@H]1OC(=O)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)C[C@@H]([C@H]2O)N(C)C)[C@@H](C)C[C@@H](C)C(=O)/C=C/[C@]1(C)O"  
MT9  SMILES            CACTVS                3.341  "CC[CH]1OC(=O)[CH](C)[CH](O[CH]2O[CH](C)C[CH]([CH]2O)N(C)C)[CH](C)C[CH](C)C(=O)C=C[C]1(C)O"  
MT9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC[C@@H]1[C@@](\C=C\C(=O)[C@@H](C[C@@H]([C@@H]([C@H](C(=O)O1)C)O[C@H]2[C@@H]([C@H](C[C@H](O2)C)N(C)C)O)C)C)(C)O"  
MT9  SMILES            "OpenEye OEToolkits"  1.5.0  "CCC1C(C=CC(=O)C(CC(C(C(C(=O)O1)C)OC2C(C(CC(O2)C)N(C)C)O)C)C)(C)O"  
MT9  InChI             InChI                 1.03   "InChI=1S/C25H43NO7/c1-9-20-25(6,30)11-10-19(27)14(2)12-15(3)22(17(5)23(29)32-20)33-24-21(28)18(26(7)8)13-16(4)31-24/h10-11,14-18,20-22,24,28,30H,9,12-13H2,1-8H3/b11-10+/t14-,15+,16-,17-,18+,20-,21-,22+,24+,25+/m1/s1"  
MT9  InChIKey          InChI                 1.03   HUKYPYXOBINMND-HYUJHOPRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MT9  "SYSTEMATIC NAME"  ACDLabs               10.04  "(3R,4S,5S,7R,9E,11S,12R)-12-ethyl-11-hydroxy-3,5,7,11-tetramethyl-2,8-dioxooxacyclododec-9-en-4-yl 3,4,6-trideoxy-3-(dimethylamino)-beta-D-xylo-hexopyranoside"  
MT9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(3R,4S,5S,7R,9E,11S,12R)-4-[(2S,3R,4S,6R)-4-dimethylamino-3-hydroxy-6-methyl-oxan-2-yl]oxy-12-ethyl-11-hydroxy-3,5,7,11-tetramethyl-1-oxacyclododec-9-ene-2,8-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MT9  "Create component"   2009-04-22  RCSB  
MT9  "Modify descriptor"  2011-06-04  RCSB  
MT9  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     MT9
_pdbx_chem_comp_synonyms.name        methymycin
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
