data_MK9
# 
_chem_comp.id                                    MK9 
_chem_comp.name                                  "N-(3-{[3-(2,6-dichloro-3,5-dimethoxyphenyl)-7-{[4-(diethylamino)butyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)prop-2-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H39 Cl2 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-02-15 
_chem_comp.pdbx_modified_date                    2019-01-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        656.603 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MK9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5USU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MK9 CLR CL1 CL 0 0 N N N -14.986 14.330 8.989  -4.234 -3.211 -1.431 CLR MK9 1  
MK9 CAQ C1  C  0 1 Y N N -13.702 13.462 9.647  -4.998 -2.095 -0.342 CAQ MK9 2  
MK9 CAO C2  C  0 1 Y N N -11.514 12.573 9.479  -6.965 -1.314 0.796  CAO MK9 3  
MK9 CAN C3  C  0 1 Y N N -11.668 12.067 10.742 -6.220 -0.312 1.399  CAN MK9 4  
MK9 OAT O1  O  0 1 N N N -10.663 11.326 11.399 -6.820 0.563  2.248  OAT MK9 5  
MK9 CBS C4  C  0 1 N N N -9.333  11.645 11.050 -8.221 0.393  2.472  CBS MK9 6  
MK9 CAM C5  C  0 1 Y N N -12.830 12.245 11.452 -4.862 -0.204 1.137  CAM MK9 7  
MK9 CLU CL2 CL 0 0 N N N -12.872 11.553 12.998 -3.930 1.050  1.893  CLU MK9 8  
MK9 CAP C6  C  0 1 Y N N -12.559 13.286 8.953  -6.355 -2.205 -0.074 CAP MK9 9  
MK9 OAS O2  O  0 1 N N N -12.559 13.865 7.679  -7.086 -3.187 -0.665 OAS MK9 10 
MK9 CBR C7  C  0 1 N N N -11.356 14.564 7.450  -8.478 -3.242 -0.344 CBR MK9 11 
MK9 CAL C8  C  0 1 Y N N -13.858 12.959 10.879 -4.250 -1.095 0.266  CAL MK9 12 
MK9 NAI N1  N  0 1 N N N -15.128 13.183 11.597 -2.879 -0.986 0.001  NAI MK9 13 
MK9 CAJ C9  C  0 1 N N N -14.778 13.985 12.755 -1.898 -1.711 0.828  CAJ MK9 14 
MK9 C5  C10 C  0 1 Y N N -16.081 14.324 13.327 -0.444 -1.532 0.466  C5  MK9 15 
MK9 C6  C11 C  0 1 Y N N -16.330 15.572 13.806 0.565  -2.155 1.160  C6  MK9 16 
MK9 N1  N2  N  0 1 Y N N -17.563 15.838 14.332 1.820  -1.947 0.779  N1  MK9 17 
MK9 C2  C12 C  0 1 Y N N -18.475 14.899 14.371 2.096  -1.156 -0.248 C2  MK9 18 
MK9 NAV N3  N  0 1 N N N -19.750 15.217 14.920 3.418  -0.966 -0.611 NAV MK9 19 
MK9 CAX C13 C  0 1 N N N -20.845 14.264 14.883 4.486  -1.635 0.136  CAX MK9 20 
MK9 N3  N4  N  0 1 Y N N -18.229 13.693 13.906 1.146  -0.541 -0.938 N3  MK9 21 
MK9 C4  C14 C  0 1 Y N N -17.061 13.386 13.363 -0.130 -0.704 -0.612 C4  MK9 22 
MK9 CAH C15 C  0 1 N N N -15.939 12.147 11.839 -2.440 -0.223 -1.016 CAH MK9 23 
MK9 OAK O3  O  0 1 N N N -15.884 11.188 11.088 -3.260 0.366  -1.694 OAK MK9 24 
MK9 NAG N5  N  0 1 N N N -16.758 12.131 12.899 -1.143 -0.075 -1.315 NAG MK9 25 
MK9 CAW C16 C  0 1 N N N -17.906 11.204 12.860 -0.779 0.783  -2.447 CAW MK9 26 
MK9 CBG C17 C  0 1 Y N N -18.912 11.565 11.884 -0.582 2.196  -1.962 CBG MK9 27 
MK9 CBL C18 C  0 1 Y N N -20.226 11.190 12.072 0.667  2.613  -1.543 CBL MK9 28 
MK9 CBH C19 C  0 1 Y N N -18.535 12.261 10.777 -1.648 3.075  -1.944 CBH MK9 29 
MK9 CBI C20 C  0 1 Y N N -19.500 12.590 9.853  -1.470 4.375  -1.506 CBI MK9 30 
MK9 CBJ C21 C  0 1 Y N N -20.815 12.227 10.034 -0.225 4.798  -1.085 CBJ MK9 31 
MK9 CBK C22 C  0 1 Y N N -21.198 11.524 11.148 0.848  3.916  -1.097 CBK MK9 32 
MK9 NBM N6  N  0 1 N N N -22.484 11.151 11.301 2.110  4.342  -0.672 NBM MK9 33 
MK9 CBN C23 C  0 1 N N N -23.391 11.923 11.908 2.217  5.245  0.323  CBN MK9 34 
MK9 OBQ O4  O  0 1 N N N -23.090 13.015 12.351 1.221  5.621  0.912  OBQ MK9 35 
MK9 CBO C24 C  0 1 N N N -24.796 11.456 12.043 3.536  5.776  0.696  CBO MK9 36 
MK9 CBP C25 C  0 1 N N N -25.759 12.591 12.338 3.642  6.668  1.677  CBP MK9 37 
MK9 H1  H1  H  0 1 N N N -10.604 12.416 8.919  -8.022 -1.398 1.000  H1  MK9 38 
MK9 H2  H2  H  0 1 N N N -8.641  11.008 11.621 -8.574 1.155  3.167  H2  MK9 39 
MK9 H3  H3  H  0 1 N N N -9.185  11.474 9.974  -8.755 0.489  1.527  H3  MK9 40 
MK9 H4  H4  H  0 1 N N N -9.136  12.702 11.283 -8.404 -0.596 2.894  H4  MK9 41 
MK9 H5  H5  H  0 1 N N N -11.376 15.011 6.445  -8.598 -3.392 0.729  H5  MK9 42 
MK9 H6  H6  H  0 1 N N N -11.245 15.359 8.202  -8.955 -2.306 -0.635 H6  MK9 43 
MK9 H7  H7  H  0 1 N N N -10.508 13.868 7.524  -8.942 -4.069 -0.882 H7  MK9 44 
MK9 H8  H8  H  0 1 N N N -14.172 13.407 13.468 -2.030 -1.394 1.863  H8  MK9 45 
MK9 H9  H9  H  0 1 N N N -14.229 14.891 12.457 -2.131 -2.775 0.773  H9  MK9 46 
MK9 H10 H10 H  0 1 N N N -15.569 16.337 13.771 0.343  -2.799 1.998  H10 MK9 47 
MK9 H11 H11 H  0 1 N N N -19.597 15.435 15.884 3.637  -0.391 -1.361 H11 MK9 48 
MK9 H12 H12 H  0 1 N N N -21.150 13.827 15.845 4.452  -1.320 1.179  H12 MK9 49 
MK9 H13 H13 H  0 1 N N N -21.739 14.562 14.316 4.349  -2.715 0.077  H13 MK9 50 
MK9 H15 H15 H  0 1 N N N -18.376 11.191 13.855 0.145  0.419  -2.895 H15 MK9 51 
MK9 H16 H16 H  0 1 N N N -17.532 10.198 12.618 -1.577 0.761  -3.189 H16 MK9 52 
MK9 H17 H17 H  0 1 N N N -20.499 10.628 12.953 1.500  1.927  -1.562 H17 MK9 53 
MK9 H18 H18 H  0 1 N N N -17.505 12.548 10.628 -2.623 2.746  -2.272 H18 MK9 54 
MK9 H19 H19 H  0 1 N N N -19.220 13.144 8.969  -2.305 5.060  -1.497 H19 MK9 55 
MK9 H20 H20 H  0 1 N N N -21.552 12.498 9.292  -0.086 5.813  -0.743 H20 MK9 56 
MK9 H21 H21 H  0 1 N N N -22.771 10.261 10.946 2.909  3.987  -1.092 H21 MK9 57 
MK9 H22 H22 H  0 1 N N N -25.098 10.424 11.942 4.420  5.442  0.172  H22 MK9 58 
MK9 H24 H24 H  0 1 N N N -26.813 12.387 12.460 4.611  7.057  1.951  H24 MK9 59 
MK9 H25 H25 H  0 1 N N N -25.391 13.602 12.426 2.758  7.001  2.200  H25 MK9 60 
MK9 CAY CAY C  0 1 N N N ?       ?      ?      5.842  -1.260 -0.467 CAY MK9 61 
MK9 CAZ CAZ C  0 1 N N N ?       ?      ?      6.957  -1.958 0.313  CAZ MK9 62 
MK9 C7  C28 C  0 1 N N N ?       ?      ?      8.313  -1.582 -0.289 C7  MK9 63 
MK9 N2  N7  N  0 1 N N N ?       ?      ?      9.384  -2.253 0.460  N2  MK9 64 
MK9 C9  C29 C  0 1 N N N ?       ?      ?      10.675 -2.110 -0.226 C9  MK9 65 
MK9 C8  C30 C  0 1 N N N ?       ?      ?      9.461  -1.746 1.837  C8  MK9 66 
MK9 C10 C31 C  0 1 N N N ?       ?      ?      10.345 -2.673 2.673  C10 MK9 67 
MK9 C11 C32 C  0 1 N N N ?       ?      ?      10.689 -2.994 -1.475 C11 MK9 68 
MK9 H14 H14 H  0 1 N N N ?       ?      ?      5.876  -1.574 -1.510 H14 MK9 69 
MK9 H23 H23 H  0 1 N N N ?       ?      ?      5.978  -0.180 -0.408 H23 MK9 70 
MK9 H26 H26 H  0 1 N N N ?       ?      ?      6.923  -1.643 1.357  H26 MK9 71 
MK9 H27 H27 H  0 1 N N N ?       ?      ?      6.820  -3.038 0.255  H27 MK9 72 
MK9 H28 H28 H  0 1 N N N ?       ?      ?      8.347  -1.897 -1.332 H28 MK9 73 
MK9 H29 H29 H  0 1 N N N ?       ?      ?      8.450  -0.502 -0.231 H29 MK9 74 
MK9 H30 H30 H  0 1 N N N ?       ?      ?      10.819 -1.069 -0.516 H30 MK9 75 
MK9 H31 H31 H  0 1 N N N ?       ?      ?      11.479 -2.415 0.444  H31 MK9 76 
MK9 H32 H32 H  0 1 N N N ?       ?      ?      9.888  -0.743 1.832  H32 MK9 77 
MK9 H33 H33 H  0 1 N N N ?       ?      ?      8.460  -1.712 2.268  H33 MK9 78 
MK9 H34 H34 H  0 1 N N N ?       ?      ?      10.316 -2.359 3.717  H34 MK9 79 
MK9 H35 H35 H  0 1 N N N ?       ?      ?      9.979  -3.696 2.591  H35 MK9 80 
MK9 H36 H36 H  0 1 N N N ?       ?      ?      11.371 -2.624 2.308  H36 MK9 81 
MK9 H37 H37 H  0 1 N N N ?       ?      ?      10.433 -4.017 -1.199 H37 MK9 82 
MK9 H38 H38 H  0 1 N N N ?       ?      ?      9.962  -2.618 -2.194 H38 MK9 83 
MK9 H39 H39 H  0 1 N N N ?       ?      ?      11.684 -2.977 -1.921 H39 MK9 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MK9 CBR OAS SING N N 1  
MK9 OAS CAP SING N N 2  
MK9 CAP CAO DOUB Y N 3  
MK9 CAP CAQ SING Y N 4  
MK9 CLR CAQ SING N N 5  
MK9 CAO CAN SING Y N 6  
MK9 CAQ CAL DOUB Y N 7  
MK9 CBI CBJ DOUB Y N 8  
MK9 CBI CBH SING Y N 9  
MK9 CBJ CBK SING Y N 10 
MK9 CAN OAT SING N N 11 
MK9 CAN CAM DOUB Y N 12 
MK9 CBH CBG DOUB Y N 13 
MK9 CAL CAM SING Y N 14 
MK9 CAL NAI SING N N 15 
MK9 CBS OAT SING N N 16 
MK9 OAK CAH DOUB N N 17 
MK9 CBK NBM SING N N 18 
MK9 CBK CBL DOUB Y N 19 
MK9 NBM CBN SING N N 20 
MK9 CAM CLU SING N N 21 
MK9 NAI CAH SING N N 22 
MK9 NAI CAJ SING N N 23 
MK9 CAH NAG SING N N 24 
MK9 CBG CBL SING Y N 25 
MK9 CBG CAW SING N N 26 
MK9 CBN CBO SING N N 27 
MK9 CBN OBQ DOUB N N 28 
MK9 CBO CBP DOUB N N 29 
MK9 CAJ C5  SING N N 30 
MK9 CAW NAG SING N N 31 
MK9 NAG C4  SING N N 32 
MK9 C5  C4  DOUB Y N 33 
MK9 C5  C6  SING Y N 34 
MK9 C4  N3  SING Y N 35 
MK9 C6  N1  DOUB Y N 36 
MK9 N3  C2  DOUB Y N 37 
MK9 N1  C2  SING Y N 38 
MK9 C2  NAV SING N N 39 
MK9 CAX NAV SING N N 40 
MK9 CAO H1  SING N N 41 
MK9 CBS H2  SING N N 42 
MK9 CBS H3  SING N N 43 
MK9 CBS H4  SING N N 44 
MK9 CBR H5  SING N N 45 
MK9 CBR H6  SING N N 46 
MK9 CBR H7  SING N N 47 
MK9 CAJ H8  SING N N 48 
MK9 CAJ H9  SING N N 49 
MK9 C6  H10 SING N N 50 
MK9 NAV H11 SING N N 51 
MK9 CAX H12 SING N N 52 
MK9 CAX H13 SING N N 53 
MK9 CAW H15 SING N N 54 
MK9 CAW H16 SING N N 55 
MK9 CBL H17 SING N N 56 
MK9 CBH H18 SING N N 57 
MK9 CBI H19 SING N N 58 
MK9 CBJ H20 SING N N 59 
MK9 NBM H21 SING N N 60 
MK9 CBO H22 SING N N 61 
MK9 CBP H24 SING N N 62 
MK9 CBP H25 SING N N 63 
MK9 CAX CAY SING N N 64 
MK9 CAY CAZ SING N N 65 
MK9 CAZ C7  SING N N 66 
MK9 C7  N2  SING N N 67 
MK9 N2  C9  SING N N 68 
MK9 N2  C8  SING N N 69 
MK9 C8  C10 SING N N 70 
MK9 C9  C11 SING N N 71 
MK9 CAY H14 SING N N 72 
MK9 CAY H23 SING N N 73 
MK9 CAZ H26 SING N N 74 
MK9 CAZ H27 SING N N 75 
MK9 C7  H28 SING N N 76 
MK9 C7  H29 SING N N 77 
MK9 C9  H30 SING N N 78 
MK9 C9  H31 SING N N 79 
MK9 C8  H32 SING N N 80 
MK9 C8  H33 SING N N 81 
MK9 C10 H34 SING N N 82 
MK9 C10 H35 SING N N 83 
MK9 C10 H36 SING N N 84 
MK9 C11 H37 SING N N 85 
MK9 C11 H38 SING N N 86 
MK9 C11 H39 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MK9 SMILES           ACDLabs              12.01 "Clc1c(c(c(cc1OC)OC)Cl)N2C(N(c3c(C2)cnc(NCCCCN(CC)CC)n3)Cc4cc(ccc4)NC(\C=C)=O)=O" 
MK9 InChI            InChI                1.03  
"InChI=1S/C32H39Cl2N7O4/c1-6-26(42)37-23-13-11-12-21(16-23)19-41-30-22(18-36-31(38-30)35-14-9-10-15-39(7-2)8-3)20-40(32(41)43)29-27(33)24(44-4)17-25(45-5)28(29)34/h6,11-13,16-18H,1,7-10,14-15,19-20H2,2-5H3,(H,37,42)(H,35,36,38)" 
MK9 InChIKey         InChI                1.03  DNVFTXQYIYFQBW-UHFFFAOYSA-N 
MK9 SMILES_CANONICAL CACTVS               3.385 "CCN(CC)CCCCNc1ncc2CN(C(=O)N(Cc3cccc(NC(=O)C=C)c3)c2n1)c4c(Cl)c(OC)cc(OC)c4Cl" 
MK9 SMILES           CACTVS               3.385 "CCN(CC)CCCCNc1ncc2CN(C(=O)N(Cc3cccc(NC(=O)C=C)c3)c2n1)c4c(Cl)c(OC)cc(OC)c4Cl" 
MK9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCN(CC)CCCCNc1ncc2c(n1)N(C(=O)N(C2)c3c(c(cc(c3Cl)OC)OC)Cl)Cc4cccc(c4)NC(=O)C=C" 
MK9 SMILES           "OpenEye OEToolkits" 2.0.6 "CCN(CC)CCCCNc1ncc2c(n1)N(C(=O)N(C2)c3c(c(cc(c3Cl)OC)OC)Cl)Cc4cccc(c4)NC(=O)C=C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MK9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(3-{[3-(2,6-dichloro-3,5-dimethoxyphenyl)-7-{[4-(diethylamino)butyl]amino}-2-oxo-3,4-dihydropyrimido[4,5-d]pyrimidin-1(2H)-yl]methyl}phenyl)prop-2-enamide"          
MK9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[3-[[3-[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]-7-[4-(diethylamino)butylamino]-2-oxidanylidene-4~{H}-pyrimido[4,5-d]pyrimidin-1-yl]methyl]phenyl]prop-2-enamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MK9 "Create component" 2017-02-15 RCSB 
MK9 "Modify formula"   2017-02-15 RCSB 
MK9 "Initial release"  2019-01-16 RCSB 
# 
