data_LN9
# 
_chem_comp.id                                    LN9 
_chem_comp.name                                  "1-[2-[(2S,3R,4S,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,6-bis(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H24 O10" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Phlorizin 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-01 
_chem_comp.pdbx_modified_date                    2023-11-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        436.409 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LN9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8HIN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LN9 C1  C1  C 0 1 Y N N N N N 84.425 67.450 67.542 -5.679 -0.824 -1.479 C1  LN9 1  
LN9 C2  C2  C 0 1 Y N N N N N 83.691 66.433 66.940 -7.044 -0.635 -1.578 C2  LN9 2  
LN9 C3  C3  C 0 1 Y N N N N N 83.244 65.354 67.702 -7.832 -0.663 -0.436 C3  LN9 3  
LN9 C4  C4  C 0 1 Y N N N N N 83.534 65.294 69.061 -7.246 -0.882 0.802  C4  LN9 4  
LN9 C5  C5  C 0 1 Y N N N N N 84.274 66.307 69.626 -5.880 -1.071 0.896  C5  LN9 5  
LN9 C6  C6  C 0 1 Y N N N N N 84.727 67.399 68.894 -5.098 -1.041 -0.244 C6  LN9 6  
LN9 C7  C7  C 0 1 N N N N N N 85.517 68.491 69.548 -3.609 -1.253 -0.140 C7  LN9 7  
LN9 C8  C8  C 0 1 N N N N N N 84.995 68.783 70.945 -2.915 0.096  0.056  C8  LN9 8  
LN9 C9  C9  C 0 1 N N N N N N 85.452 70.023 71.639 -1.426 -0.116 0.160  C9  LN9 9  
LN9 O1  O1  O 0 1 N N N N N N 86.026 69.875 72.707 -0.966 -1.236 0.085  O1  LN9 10 
LN9 C10 C10 C 0 1 Y N N N N N 85.188 71.374 71.095 -0.537 1.028  0.352  C10 LN9 11 
LN9 C11 C11 C 0 1 Y N N N N N 84.249 71.632 70.060 -1.067 2.329  0.445  C11 LN9 12 
LN9 C12 C12 C 0 1 Y N N N N N 84.017 72.893 69.562 -0.218 3.404  0.632  C12 LN9 13 
LN9 C13 C13 C 0 1 Y N N N N N 84.688 73.966 70.101 1.153  3.203  0.727  C13 LN9 14 
LN9 C14 C14 C 0 1 Y N N N N N 85.614 73.790 71.097 1.686  1.923  0.636  C14 LN9 15 
LN9 C15 C15 C 0 1 Y N N N N N 85.848 72.530 71.603 0.854  0.836  0.450  C15 LN9 16 
LN9 O2  O2  O 0 1 N N N N N N 86.815 72.502 72.577 1.375  -0.414 0.367  O2  LN9 17 
LN9 C16 C16 C 0 1 N N S N N N 86.658 72.991 73.892 2.795  -0.532 0.475  C16 LN9 18 
LN9 C17 C17 C 0 1 N N R N N N 86.819 74.508 73.982 3.184  -2.013 0.484  C17 LN9 19 
LN9 C18 C18 C 0 1 N N S N N N 86.812 74.864 75.448 4.710  -2.131 0.539  C18 LN9 20 
LN9 C19 C19 C 0 1 N N S N N N 85.508 74.382 76.065 5.313  -1.380 -0.652 C19 LN9 21 
LN9 C20 C20 C 0 1 N N R N N N 85.522 72.884 75.896 4.841  0.077  -0.617 C20 LN9 22 
LN9 O3  O3  O 0 1 N N N N N N 85.418 72.638 74.486 3.413  0.114  -0.640 O3  LN9 23 
LN9 C21 C21 C 0 1 N N N N N N 84.421 72.151 76.552 5.391  0.820  -1.837 C21 LN9 24 
LN9 O4  O4  O 0 1 N N N N N N 84.596 70.774 76.252 5.049  2.204  -1.745 O4  LN9 25 
LN9 O5  O5  O 0 1 N N N N N N 85.414 74.713 77.435 6.739  -1.422 -0.571 O5  LN9 26 
LN9 O6  O6  O 0 1 N N N N N N 87.019 76.251 75.667 5.085  -3.509 0.475  O6  LN9 27 
LN9 O7  O7  O 0 1 N N N N N N 88.023 74.922 73.360 2.614  -2.649 1.630  O7  LN9 28 
LN9 O8  O8  O 0 1 N N N N N N 84.468 75.219 69.632 1.978  4.265  0.911  O8  LN9 29 
LN9 O9  O9  O 0 1 N N N N N N 83.499 70.696 69.453 -2.405 2.527  0.352  O9  LN9 30 
LN9 O10 O10 O 0 1 N N N N N N 82.525 64.355 67.122 -9.174 -0.477 -0.530 O10 LN9 31 
LN9 H1  H1  H 0 1 N N N N N N 84.763 68.288 66.950 -5.066 -0.806 -2.368 H1  LN9 32 
LN9 H2  H2  H 0 1 N N N N N N 83.468 66.479 65.884 -7.498 -0.464 -2.543 H2  LN9 33 
LN9 H3  H3  H 0 1 N N N N N N 83.185 64.467 69.662 -7.857 -0.905 1.693  H3  LN9 34 
LN9 H4  H4  H 0 1 N N N N N N 84.512 66.252 70.678 -5.424 -1.240 1.860  H4  LN9 35 
LN9 H5  H5  H 0 1 N N N N N N 86.570 68.181 69.616 -3.393 -1.900 0.711  H5  LN9 36 
LN9 H6  H6  H 0 1 N N N N N N 85.442 69.403 68.938 -3.244 -1.720 -1.054 H6  LN9 37 
LN9 H7  H7  H 0 1 N N N N N N 83.899 68.837 70.876 -3.131 0.743  -0.794 H7  LN9 38 
LN9 H8  H8  H 0 1 N N N N N N 85.281 67.932 71.581 -3.280 0.563  0.971  H8  LN9 39 
LN9 H9  H9  H 0 1 N N N N N N 83.314 73.039 68.755 -0.623 4.403  0.704  H9  LN9 40 
LN9 H10 H10 H 0 1 N N N N N N 86.159 74.638 71.484 2.753  1.778  0.711  H10 LN9 41 
LN9 H11 H11 H 0 1 N N N N N N 87.459 72.557 74.509 3.130  -0.062 1.399  H11 LN9 42 
LN9 H12 H12 H 0 1 N N N N N N 85.956 74.984 73.494 2.814  -2.493 -0.422 H12 LN9 43 
LN9 H13 H13 H 0 1 N N N N N N 87.629 74.306 75.928 5.076  -1.697 1.469  H13 LN9 44 
LN9 H14 H14 H 0 1 N N N N N N 84.663 74.805 75.503 4.986  -1.847 -1.581 H14 LN9 45 
LN9 H15 H15 H 0 1 N N N N N N 86.482 72.497 76.268 5.203  0.555  0.293  H15 LN9 46 
LN9 H16 H16 H 0 1 N N N N N N 84.460 72.308 77.640 6.475  0.715  -1.868 H16 LN9 47 
LN9 H17 H17 H 0 1 N N N N N N 83.452 72.501 76.165 4.958  0.398  -2.744 H17 LN9 48 
LN9 H18 H18 H 0 1 N N N N N N 83.902 70.270 76.660 5.365  2.737  -2.487 H18 LN9 49 
LN9 H19 H19 H 0 1 N N N N N N 84.588 74.396 77.782 7.107  -2.316 -0.582 H19 LN9 50 
LN9 H20 H20 H 0 1 N N N N N N 87.007 76.430 76.600 4.732  -4.047 1.196  H20 LN9 51 
LN9 H21 H21 H 0 1 N N N N N N 88.106 75.866 73.426 1.649  -2.608 1.663  H21 LN9 52 
LN9 H22 H22 H 0 1 N N N N N N 85.008 75.836 70.111 2.143  4.479  1.839  H22 LN9 53 
LN9 H23 H23 H 0 1 N N N N N N 83.691 69.844 69.827 -2.868 2.491  1.200  H23 LN9 54 
LN9 H24 H24 H 0 1 N N N N N N 82.301 63.704 67.777 -9.677 -1.294 -0.658 H24 LN9 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LN9 C2  C1  DOUB Y N 1  
LN9 C2  C3  SING Y N 2  
LN9 O10 C3  SING N N 3  
LN9 C1  C6  SING Y N 4  
LN9 C3  C4  DOUB Y N 5  
LN9 C6  C7  SING N N 6  
LN9 C6  C5  DOUB Y N 7  
LN9 C4  C5  SING Y N 8  
LN9 O9  C11 SING N N 9  
LN9 C7  C8  SING N N 10 
LN9 C12 C11 DOUB Y N 11 
LN9 C12 C13 SING Y N 12 
LN9 O8  C13 SING N N 13 
LN9 C11 C10 SING Y N 14 
LN9 C13 C14 DOUB Y N 15 
LN9 C8  C9  SING N N 16 
LN9 C10 C15 DOUB Y N 17 
LN9 C10 C9  SING N N 18 
LN9 C14 C15 SING Y N 19 
LN9 C15 O2  SING N N 20 
LN9 C9  O1  DOUB N N 21 
LN9 O2  C16 SING N N 22 
LN9 O7  C17 SING N N 23 
LN9 C16 C17 SING N N 24 
LN9 C16 O3  SING N N 25 
LN9 C17 C18 SING N N 26 
LN9 O3  C20 SING N N 27 
LN9 C18 O6  SING N N 28 
LN9 C18 C19 SING N N 29 
LN9 C20 C19 SING N N 30 
LN9 C20 C21 SING N N 31 
LN9 C19 O5  SING N N 32 
LN9 O4  C21 SING N N 33 
LN9 C1  H1  SING N N 34 
LN9 C2  H2  SING N N 35 
LN9 C4  H3  SING N N 36 
LN9 C5  H4  SING N N 37 
LN9 C7  H5  SING N N 38 
LN9 C7  H6  SING N N 39 
LN9 C8  H7  SING N N 40 
LN9 C8  H8  SING N N 41 
LN9 C12 H9  SING N N 42 
LN9 C14 H10 SING N N 43 
LN9 C16 H11 SING N N 44 
LN9 C17 H12 SING N N 45 
LN9 C18 H13 SING N N 46 
LN9 C19 H14 SING N N 47 
LN9 C20 H15 SING N N 48 
LN9 C21 H16 SING N N 49 
LN9 C21 H17 SING N N 50 
LN9 O4  H18 SING N N 51 
LN9 O5  H19 SING N N 52 
LN9 O6  H20 SING N N 53 
LN9 O7  H21 SING N N 54 
LN9 O8  H22 SING N N 55 
LN9 O9  H23 SING N N 56 
LN9 O10 H24 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LN9 InChI            InChI                1.06  "InChI=1S/C21H24O10/c22-9-16-18(27)19(28)20(29)21(31-16)30-15-8-12(24)7-14(26)17(15)13(25)6-3-10-1-4-11(23)5-2-10/h1-2,4-5,7-8,16,18-24,26-29H,3,6,9H2/t16-,18-,19+,20-,21-/m1/s1" 
LN9 InChIKey         InChI                1.06  IOUVKUPGCMBWBT-QNDFHXLGSA-N                                                                                                                                                        
LN9 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@@H](Oc2cc(O)cc(O)c2C(=O)CCc3ccc(O)cc3)[C@H](O)[C@@H](O)[C@@H]1O"                                                                                                      
LN9 SMILES           CACTVS               3.385 "OC[CH]1O[CH](Oc2cc(O)cc(O)c2C(=O)CCc3ccc(O)cc3)[CH](O)[CH](O)[CH]1O"                                                                                                              
LN9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)c2c(cc(cc2O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O)O"                                                                                                     
LN9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1CCC(=O)c2c(cc(cc2OC3C(C(C(C(O3)CO)O)O)O)O)O)O"                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           LN9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1-[2-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,6-bis(oxidanyl)phenyl]-3-(4-hydroxyphenyl)propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LN9 "Create component" 2022-12-01 PDBJ 
LN9 "Initial release"  2023-11-22 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      LN9 
_pdbx_chem_comp_synonyms.name         Phlorizin 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
