data_LG9
#

_chem_comp.id                                   LG9
_chem_comp.name                                 "(1R,2R,3R,6R,7R,7AR)-3,7-BIS(HYDROXYMETHYL)HEXAHYDRO-1H-PYRROLIZINE-1,2,6-TRIOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C9 H17 N O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "CASUARINE ANALOGUE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-11-17
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       219.235
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LG9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WYN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LG9  O4    O4    O  0  1  N  N  N  -21.881  -75.089  91.269   3.925  -0.720   0.821  O4    LG9   1  
LG9  C9    C9    C  0  1  N  N  N  -21.473  -74.831  92.637   2.565  -0.658   1.257  C9    LG9   2  
LG9  C1    C1    C  0  1  N  N  R  -21.593  -73.337  93.025   1.664  -0.311   0.070  C1    LG9   3  
LG9  C5    C5    C  0  1  N  N  R  -22.985  -73.004  93.596   0.186  -0.361   0.490  C5    LG9   4  
LG9  C4    C4    C  0  1  N  N  R  -23.437  -71.580  93.268  -0.587  -1.283  -0.483  C4    LG9   5  
LG9  O1    O1    O  0  1  N  N  N  -24.302  -71.548  92.115  -0.585  -2.634  -0.019  O1    LG9   6  
LG9  C6    C6    C  0  1  N  N  R  -24.091  -71.060  94.555  -2.014  -0.677  -0.422  C6    LG9   7  
LG9  O2    O2    O  0  1  N  N  N  -24.160  -69.632  94.572  -2.731  -0.952  -1.627  O2    LG9   8  
LG9  C7    C7    C  0  1  N  N  R  -23.116  -71.511  95.640  -1.744   0.836  -0.282  C7    LG9   9  
LG9  C8    C8    C  0  1  N  N  N  -23.660  -71.793  97.056  -2.763   1.459   0.675  C8    LG9  10  
LG9  O3    O3    O  0  1  N  N  N  -24.897  -72.502  97.012  -2.759   0.741   1.910  O3    LG9  11  
LG9  N4    N4    N  0  1  N  N  N  -22.612  -72.698  94.964  -0.383   0.991   0.265  N4    LG9  12  
LG9  C3    C3    C  0  1  N  N  N  -21.466  -73.438  95.444   0.487   1.637  -0.750  C3    LG9  13  
LG9  C2    C2    C  0  1  N  N  R  -20.606  -73.131  94.176   1.908   1.148  -0.380  C2    LG9  14  
LG9  OXT   OXT   O  0  1  N  Y  N  -20.209  -71.750  94.229   2.770   1.189  -1.518  OXT   LG9  15  
LG9  H4    H4    H  0  1  N  N  N  -22.828  -75.145  91.226   4.554  -0.936   1.523  H4    LG9  16  
LG9  H91C  H91C  H  0  0  N  N  N  -22.118  -75.417  93.308   2.271  -1.624   1.666  H91C  LG9  17  
LG9  H92C  H92C  H  0  0  N  N  N  -20.415  -75.116  92.729   2.465   0.108   2.026  H92C  LG9  18  
LG9  H1    H1    H  0  1  N  N  N  -21.409  -72.712  92.138   1.847  -0.998  -0.756  H1    LG9  19  
LG9  H5    H5    H  0  1  N  N  N  -23.708  -73.777  93.297   0.076  -0.689   1.523  H5    LG9  20  
LG9  H2    H2    H  0  1  N  N  N  -19.702  -73.750  94.081   2.319   1.740   0.438  H2    LG9  21  
LG9  HA    HA    H  0  1  N  N  N  -22.600  -70.927  92.978  -0.178  -1.217  -1.491  HA    LG9  22  
LG9  HB    HB    H  0  1  N  N  N  -25.209  -71.541  92.399  -1.058  -3.249  -0.596  HB    LG9  23  
LG9  H6    H6    H  0  1  N  N  N  -25.121  -71.429  94.673  -2.557  -1.056   0.443  H6    LG9  24  
LG9  HC    HC    H  0  1  N  N  N  -24.175  -69.326  95.471  -2.861  -1.894  -1.801  HC    LG9  25  
LG9  H7    H7    H  0  1  N  N  N  -22.398  -70.729  95.926  -1.810   1.316  -1.258  H7    LG9  26  
LG9  H81C  H81C  H  0  0  N  N  N  -22.924  -72.400  97.604  -2.498   2.500   0.859  H81C  LG9  27  
LG9  H82C  H82C  H  0  0  N  N  N  -23.832  -70.829  97.558  -3.757   1.410   0.229  H82C  LG9  28  
LG9  H3    H3    H  0  1  N  N  N  -25.204  -72.660  97.897  -3.382   1.082   2.565  H3    LG9  29  
LG9  H31C  H31C  H  0  0  N  N  N  -21.042  -73.078  96.393   0.216   1.305  -1.753  H31C  LG9  30  
LG9  H32C  H32C  H  0  0  N  N  N  -21.611  -74.490  95.729   0.423   2.723  -0.675  H32C  LG9  31  
LG9  HXT   HXT   H  0  1  N  N  N  -20.121  -71.480  95.136   2.954   2.082  -1.840  HXT   LG9  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LG9  O4   C9    SING  N  N   1  
LG9  C9   C1    SING  N  N   2  
LG9  C1   C5    SING  N  N   3  
LG9  C1   C2    SING  N  N   4  
LG9  C5   C4    SING  N  N   5  
LG9  C5   N4    SING  N  N   6  
LG9  C4   O1    SING  N  N   7  
LG9  C4   C6    SING  N  N   8  
LG9  C6   O2    SING  N  N   9  
LG9  C6   C7    SING  N  N  10  
LG9  C7   C8    SING  N  N  11  
LG9  C7   N4    SING  N  N  12  
LG9  C8   O3    SING  N  N  13  
LG9  N4   C3    SING  N  N  14  
LG9  C3   C2    SING  N  N  15  
LG9  C2   OXT   SING  N  N  16  
LG9  O4   H4    SING  N  N  17  
LG9  C9   H91C  SING  N  N  18  
LG9  C9   H92C  SING  N  N  19  
LG9  C1   H1    SING  N  N  20  
LG9  C5   H5    SING  N  N  21  
LG9  C2   H2    SING  N  N  22  
LG9  C4   HA    SING  N  N  23  
LG9  O1   HB    SING  N  N  24  
LG9  C6   H6    SING  N  N  25  
LG9  O2   HC    SING  N  N  26  
LG9  C7   H7    SING  N  N  27  
LG9  C8   H81C  SING  N  N  28  
LG9  C8   H82C  SING  N  N  29  
LG9  O3   H3    SING  N  N  30  
LG9  C3   H31C  SING  N  N  31  
LG9  C3   H32C  SING  N  N  32  
LG9  OXT  HXT   SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LG9  SMILES            ACDLabs               10.04  "OC2C(C1N(C(C(O)C1O)CO)C2)CO"  
LG9  SMILES_CANONICAL  CACTVS                3.352  "OC[C@@H]1[C@@H](O)CN2[C@H](CO)[C@@H](O)[C@H](O)[C@@H]12"  
LG9  SMILES            CACTVS                3.352  "OC[CH]1[CH](O)CN2[CH](CO)[CH](O)[CH](O)[CH]12"  
LG9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "C1[C@@H]([C@H]([C@H]2[N@@]1[C@@H]([C@H]([C@@H]2O)O)CO)CO)O"  
LG9  SMILES            "OpenEye OEToolkits"  1.6.1  "C1C(C(C2N1C(C(C2O)O)CO)CO)O"  
LG9  InChI             InChI                 1.03   "InChI=1S/C9H17NO5/c11-2-4-6(13)1-10-5(3-12)8(14)9(15)7(4)10/h4-9,11-15H,1-3H2/t4-,5-,6+,7-,8-,9-/m1/s1"  
LG9  InChIKey          InChI                 1.03   WQQQECZSNNTNJJ-FJYMVOSHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LG9  "SYSTEMATIC NAME"  ACDLabs               10.04  "(1R,2R,3R,6R,7R,7aR)-3,7-bis(hydroxymethyl)hexahydro-1H-pyrrolizine-1,2,6-triol"  
LG9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(1R,2R,3R,4R,6R,7R,8R)-3,7-bis(hydroxymethyl)-2,3,5,6,7,8-hexahydro-1H-pyrrolizine-1,2,6-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LG9  "Create component"   2009-11-17  EBI   
LG9  "Modify descriptor"  2011-06-04  RCSB  
LG9  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LG9
_pdbx_chem_comp_synonyms.name        "CASUARINE ANALOGUE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
