data_KU9
# 
_chem_comp.id                                    KU9 
_chem_comp.name                                  "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-(2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H25 Cl N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-27 
_chem_comp.pdbx_modified_date                    2017-12-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        525.019 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KU9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WAP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KU9 C1  C1  C  0 1 N N N -60.919 356.279 694.333 -5.512 0.982  -0.501 C1  KU9 1  
KU9 C10 C2  C  0 1 Y N N -58.350 358.010 686.244 5.064  3.018  1.089  C10 KU9 2  
KU9 C11 C3  C  0 1 Y N N -57.636 358.709 687.202 3.990  2.438  1.736  C11 KU9 3  
KU9 C12 C4  C  0 1 Y N N -58.331 359.486 688.117 2.728  2.483  1.168  C12 KU9 4  
KU9 C13 C5  C  0 1 N N N -57.817 360.338 689.248 1.408  1.933  1.666  C13 KU9 5  
KU9 C14 C6  C  0 1 N N N -58.931 355.789 693.084 -3.963 -0.759 -0.245 C14 KU9 6  
KU9 C15 C7  C  0 1 N N S -57.772 354.876 692.746 -3.680 -2.239 -0.244 C15 KU9 7  
KU9 C16 C8  C  0 1 N N N -56.784 355.374 690.519 -1.189 -2.045 -0.458 C16 KU9 8  
KU9 C17 C9  C  0 1 N N N -57.379 354.116 689.919 0.177  -2.370 0.090  C17 KU9 9  
KU9 C18 C10 C  0 1 Y N N -60.165 353.878 690.201 2.950  -2.123 -0.196 C18 KU9 10 
KU9 C19 C11 C  0 1 Y N N -60.088 352.616 690.790 2.916  -2.883 0.966  C19 KU9 11 
KU9 C2  C12 C  0 1 N N N -60.976 357.492 693.650 -4.420 1.924  -0.222 C2  KU9 12 
KU9 C20 C13 C  0 1 Y N N -61.046 352.222 691.706 4.096  -3.260 1.578  C20 KU9 13 
KU9 C21 C14 C  0 1 Y N N -62.076 353.072 692.040 5.310  -2.881 1.035  C21 KU9 14 
KU9 C22 C15 C  0 1 Y N N -62.165 354.323 691.468 5.349  -2.124 -0.122 C22 KU9 15 
KU9 C23 C16 C  0 1 Y N N -61.211 354.720 690.552 4.172  -1.744 -0.739 C23 KU9 16 
KU9 C24 C17 C  0 1 N N N -55.784 356.265 692.622 -2.309 -3.284 1.417  C24 KU9 17 
KU9 C25 C18 C  0 1 N N N -56.166 355.992 694.064 -3.669 -4.026 1.390  C25 KU9 18 
KU9 C26 C19 C  0 1 N N N -56.866 354.644 693.963 -4.599 -2.949 0.772  C26 KU9 19 
KU9 C3  C20 C  0 1 N N N -60.021 357.795 692.725 -3.162 1.397  0.026  C3  KU9 20 
KU9 C4  C21 C  0 1 N N N -60.058 359.098 691.977 -2.021 2.295  0.315  C4  KU9 21 
KU9 C5  C22 C  0 1 N N N -59.044 360.429 690.177 0.329  2.666  0.841  C5  KU9 22 
KU9 C6  C23 C  0 1 N N N -60.210 360.466 689.168 1.087  3.022  -0.455 C6  KU9 23 
KU9 C7  C24 C  0 1 Y N N -59.717 359.556 688.075 2.543  3.109  -0.051 C7  KU9 24 
KU9 C8  C25 C  0 1 Y N N -60.427 358.860 687.107 3.621  3.688  -0.698 C8  KU9 25 
KU9 C9  C26 C  0 1 Y N N -59.729 358.084 686.198 4.879  3.648  -0.127 C9  KU9 26 
KU9 N1  N1  N  0 1 N N N -59.122 359.253 691.024 -0.801 1.777  0.555  N1  KU9 27 
KU9 N2  N2  N  0 1 N N N -59.009 356.959 692.445 -2.987 0.064  0.004  N2  KU9 28 
KU9 N3  N3  N  0 1 N N N -56.794 355.521 691.854 -2.293 -2.483 0.179  N3  KU9 29 
KU9 N4  N4  N  0 1 N N N -59.868 355.442 694.020 -5.227 -0.338 -0.493 N4  KU9 30 
KU9 O1  O1  O  0 1 N N N -61.750 355.928 695.184 -6.641 1.380  -0.728 O1  KU9 31 
KU9 O2  O2  O  0 1 N N N -62.003 358.298 693.957 -4.635 3.263  -0.208 O2  KU9 32 
KU9 O3  O3  O  0 1 N N N -60.889 359.967 692.235 -2.185 3.499  0.334  O3  KU9 33 
KU9 O4  O4  O  0 1 N N N -56.314 356.245 689.793 -1.294 -1.390 -1.474 O4  KU9 34 
KU9 S1  S1  S  0 1 N N N -58.939 354.381 689.033 1.447  -1.646 -0.984 S1  KU9 35 
KU9 CL1 CL1 CL 0 0 N N N -61.344 356.295 689.845 4.221  -0.794 -2.192 CL1 KU9 36 
KU9 H1  H1  H  0 1 N N N -57.824 357.400 685.525 6.047  2.981  1.535  H1  KU9 37 
KU9 H2  H2  H  0 1 N N N -56.558 358.651 687.236 4.135  1.949  2.688  H2  KU9 38 
KU9 H3  H3  H  0 1 N N N -56.968 359.856 689.755 1.355  0.859  1.489  H3  KU9 39 
KU9 H4  H4  H  0 1 N N N -57.514 361.333 688.891 1.285  2.149  2.727  H4  KU9 40 
KU9 H5  H5  H  0 1 N N N -58.128 353.919 692.336 -3.843 -2.649 -1.241 H5  KU9 41 
KU9 H6  H6  H  0 1 N N N -57.562 353.399 690.733 0.272  -1.958 1.095  H6  KU9 42 
KU9 H7  H7  H  0 1 N N N -56.649 353.692 689.214 0.306  -3.452 0.127  H7  KU9 43 
KU9 H8  H8  H  0 1 N N N -59.281 351.947 690.531 1.969  -3.179 1.391  H8  KU9 44 
KU9 H9  H9  H  0 1 N N N -60.986 351.244 692.161 4.070  -3.851 2.481  H9  KU9 45 
KU9 H10 H10 H  0 1 N N N -62.820 352.756 692.756 6.231  -3.177 1.516  H10 KU9 46 
KU9 H11 H11 H  0 1 N N N -62.974 354.987 691.734 6.299  -1.829 -0.542 H11 KU9 47 
KU9 H12 H12 H  0 1 N N N -54.772 355.892 692.406 -2.248 -2.634 2.290  H12 KU9 48 
KU9 H13 H13 H  0 1 N N N -55.834 357.341 692.399 -1.487 -3.999 1.419  H13 KU9 49 
KU9 H14 H14 H  0 1 N N N -55.276 355.932 694.708 -3.619 -4.910 0.756  H14 KU9 50 
KU9 H15 H15 H  0 1 N N N -56.846 356.766 694.450 -3.990 -4.288 2.398  H15 KU9 51 
KU9 H16 H16 H  0 1 N N N -57.452 354.424 694.867 -4.942 -2.251 1.536  H16 KU9 52 
KU9 H17 H17 H  0 1 N N N -56.149 353.829 693.784 -5.445 -3.415 0.266  H17 KU9 53 
KU9 H18 H18 H  0 1 N N N -59.014 361.357 690.766 -0.009 3.565  1.356  H18 KU9 54 
KU9 H19 H19 H  0 1 N N N -60.379 361.486 688.792 0.948  2.241  -1.202 H19 KU9 55 
KU9 H20 H20 H  0 1 N N N -61.138 360.083 689.617 0.743  3.981  -0.843 H20 KU9 56 
KU9 H21 H21 H  0 1 N N N -61.504 358.923 687.064 3.478  4.177  -1.650 H21 KU9 57 
KU9 H22 H22 H  0 1 N N N -60.268 357.530 685.444 5.717  4.102  -0.634 H22 KU9 58 
KU9 H23 H23 H  0 1 N N N -58.449 358.525 690.893 -0.670 0.816  0.540  H23 KU9 59 
KU9 H24 H24 H  0 1 N N N -59.789 354.562 694.488 -5.926 -0.986 -0.674 H24 KU9 60 
KU9 H25 H25 H  0 1 N N N -61.931 359.106 693.463 -5.549 3.516  -0.395 H25 KU9 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KU9 C9  C10 DOUB Y N 1  
KU9 C9  C8  SING Y N 2  
KU9 C10 C11 SING Y N 3  
KU9 C8  C7  DOUB Y N 4  
KU9 C11 C12 DOUB Y N 5  
KU9 C7  C12 SING Y N 6  
KU9 C7  C6  SING N N 7  
KU9 C12 C13 SING N N 8  
KU9 S1  C17 SING N N 9  
KU9 S1  C18 SING N N 10 
KU9 C6  C5  SING N N 11 
KU9 C13 C5  SING N N 12 
KU9 O4  C16 DOUB N N 13 
KU9 CL1 C23 SING N N 14 
KU9 C17 C16 SING N N 15 
KU9 C5  N1  SING N N 16 
KU9 C18 C23 DOUB Y N 17 
KU9 C18 C19 SING Y N 18 
KU9 C16 N3  SING N N 19 
KU9 C23 C22 SING Y N 20 
KU9 C19 C20 DOUB Y N 21 
KU9 N1  C4  SING N N 22 
KU9 C22 C21 DOUB Y N 23 
KU9 C20 C21 SING Y N 24 
KU9 N3  C24 SING N N 25 
KU9 N3  C15 SING N N 26 
KU9 C4  O3  DOUB N N 27 
KU9 C4  C3  SING N N 28 
KU9 N2  C3  SING N N 29 
KU9 N2  C14 DOUB N N 30 
KU9 C24 C25 SING N N 31 
KU9 C3  C2  DOUB N N 32 
KU9 C15 C14 SING N N 33 
KU9 C15 C26 SING N N 34 
KU9 C14 N4  SING N N 35 
KU9 C2  O2  SING N N 36 
KU9 C2  C1  SING N N 37 
KU9 C26 C25 SING N N 38 
KU9 N4  C1  SING N N 39 
KU9 C1  O1  DOUB N N 40 
KU9 C10 H1  SING N N 41 
KU9 C11 H2  SING N N 42 
KU9 C13 H3  SING N N 43 
KU9 C13 H4  SING N N 44 
KU9 C15 H5  SING N N 45 
KU9 C17 H6  SING N N 46 
KU9 C17 H7  SING N N 47 
KU9 C19 H8  SING N N 48 
KU9 C20 H9  SING N N 49 
KU9 C21 H10 SING N N 50 
KU9 C22 H11 SING N N 51 
KU9 C24 H12 SING N N 52 
KU9 C24 H13 SING N N 53 
KU9 C25 H14 SING N N 54 
KU9 C25 H15 SING N N 55 
KU9 C26 H16 SING N N 56 
KU9 C26 H17 SING N N 57 
KU9 C5  H18 SING N N 58 
KU9 C6  H19 SING N N 59 
KU9 C6  H20 SING N N 60 
KU9 C8  H21 SING N N 61 
KU9 C9  H22 SING N N 62 
KU9 N1  H23 SING N N 63 
KU9 N4  H24 SING N N 64 
KU9 O2  H25 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KU9 SMILES           ACDLabs              12.01 "C3(=O)C(O)=C(C(=O)NC2Cc1ccccc1C2)N=C(N3)C4CCCN4C(CSc5c(cccc5)Cl)=O" 
KU9 InChI            InChI                1.03  
"InChI=1S/C26H25ClN4O4S/c27-18-8-3-4-10-20(18)36-14-21(32)31-11-5-9-19(31)24-29-22(23(33)26(35)30-24)25(34)28-17-12-15-6-1-2-7-16(15)13-17/h1-4,6-8,10,17,19,33H,5,9,11-14H2,(H,28,34)(H,29,30,35)/t19-/m0/s1" 
KU9 InChIKey         InChI                1.03  UWHPAPZFSVMNKS-IBGZPJMESA-N 
KU9 SMILES_CANONICAL CACTVS               3.385 "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NC4Cc5ccccc5C4" 
KU9 SMILES           CACTVS               3.385 "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)CSc3ccccc3Cl)C(=O)NC4Cc5ccccc5C4" 
KU9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)[C@@H]4CCCN4C(=O)CSc5ccccc5Cl)O" 
KU9 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2c(c1)CC(C2)NC(=O)C3=C(C(=O)NC(=N3)C4CCCN4C(=O)CSc5ccccc5Cl)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KU9 "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(2S)-1-{[(2-chlorophenyl)sulfanyl]acetyl}pyrrolidin-2-yl]-N-(2,3-dihydro-1H-inden-2-yl)-5-hydroxy-6-oxo-1,6-dihydropyrimidine-4-carboxamide"                  
KU9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(2~{S})-1-[2-(2-chlorophenyl)sulfanylethanoyl]pyrrolidin-2-yl]-~{N}-(2,3-dihydro-1~{H}-inden-2-yl)-5-oxidanyl-6-oxidanylidene-1~{H}-pyrimidine-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KU9 "Create component" 2017-06-27 RCSB 
KU9 "Initial release"  2018-01-03 RCSB 
# 
