data_JV9
# 
_chem_comp.id                                    JV9 
_chem_comp.name                                  "7-methoxy-4-[2-(methylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-3,4-dihydroquinoxalin-2(1H)-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-02-02 
_chem_comp.pdbx_modified_date                    2023-04-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        325.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JV9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TTF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JV9 C11 C1  C 0 1 Y N N -9.370  -5.517  37.275 -3.530 0.707  -0.049 C11 JV9 1  
JV9 C12 C2  C 0 1 Y N N -8.467  -6.574  37.405 -2.559 -0.259 -0.205 C12 JV9 2  
JV9 C13 C3  C 0 1 N N N -8.954  -7.777  36.561 -3.201 -1.587 -0.533 C13 JV9 3  
JV9 C14 C4  C 0 1 N N N -10.332 -7.430  36.026 -4.636 -1.241 -0.986 C14 JV9 4  
JV9 C15 C5  C 0 1 N N N -10.519 -5.957  36.347 -4.898 0.095  -0.255 C15 JV9 5  
JV9 C16 C6  C 0 1 Y N N -5.940  -8.407  37.498 1.140  -0.454 -0.199 C16 JV9 6  
JV9 C17 C7  C 0 1 Y N N -5.569  -8.148  36.151 1.530  0.794  -0.647 C17 JV9 7  
JV9 C18 C8  C 0 1 Y N N -5.220  -9.197  35.285 2.870  1.138  -0.644 C18 JV9 8  
JV9 C19 C9  C 0 1 Y N N -5.207  -10.529 35.746 3.820  0.234  -0.192 C19 JV9 9  
JV9 C21 C10 C 0 1 N N N -4.279  -11.229 33.672 5.466  1.883  -0.671 C21 JV9 10 
JV9 C22 C11 C 0 1 Y N N -5.571  -10.789 37.066 3.433  -1.019 0.261  C22 JV9 11 
JV9 C02 C12 C 0 1 N N N -6.301  -9.011  40.347 0.437  -3.074 0.467  C02 JV9 12 
JV9 C03 C13 C 0 1 N N N -5.942  -7.593  39.818 -0.525 -2.262 -0.363 C03 JV9 13 
JV9 C05 C14 C 0 1 Y N N -7.356  -6.343  38.229 -1.220 0.105  -0.050 C05 JV9 14 
JV9 C07 C15 C 0 1 Y N N -8.129  -4.157  38.682 -1.888 2.268  0.385  C07 JV9 15 
JV9 C09 C16 C 0 1 N N N -6.672  -2.772  40.036 -0.142 3.948  0.851  C09 JV9 16 
JV9 C23 C17 C 0 1 Y N N -5.928  -9.720  37.937 2.092  -1.367 0.261  C23 JV9 17 
JV9 N04 N1  N 0 1 N N N -6.320  -7.358  38.459 -0.213 -0.835 -0.199 N04 JV9 18 
JV9 N06 N2  N 0 1 Y N N -7.240  -5.148  38.837 -0.926 1.369  0.243  N06 JV9 19 
JV9 N08 N3  N 0 1 N N N -7.946  -2.912  39.361 -1.549 3.575  0.690  N08 JV9 20 
JV9 N10 N4  N 0 1 Y N N -9.184  -4.350  37.908 -3.165 1.949  0.244  N10 JV9 21 
JV9 N24 N5  N 0 1 N N N -6.290  -10.020 39.337 1.679  -2.623 0.720  N24 JV9 22 
JV9 O01 O1  O 0 1 N N N -6.575  -9.255  41.476 0.086  -4.147 0.911  O01 JV9 23 
JV9 O20 O2  O 0 1 N N N -4.852  -11.596 34.902 5.136  0.577  -0.192 O20 JV9 24 
JV9 H1  H1  H 0 1 N N N -9.011  -8.678  37.189 -2.658 -2.081 -1.339 H1  JV9 25 
JV9 H2  H2  H 0 1 N N N -11.104 -8.035  36.524 -4.685 -1.107 -2.067 H2  JV9 26 
JV9 H3  H3  H 0 1 N N N -10.494 -5.367  35.419 -5.384 -0.087 0.704  H3  JV9 27 
JV9 H4  H4  H 0 1 N N N -5.555  -7.131  35.788 0.791  1.498  -1.000 H4  JV9 28 
JV9 H5  H5  H 0 1 N N N -4.960  -8.982  34.259 3.177  2.113  -0.994 H5  JV9 29 
JV9 H6  H6  H 0 1 N N N -4.041  -12.134 33.093 6.545  2.027  -0.618 H6  JV9 30 
JV9 H7  H7  H 0 1 N N N -4.990  -10.609 33.107 5.136  1.984  -1.705 H7  JV9 31 
JV9 H8  H8  H 0 1 N N N -3.357  -10.656 33.853 4.968  2.632  -0.056 H8  JV9 32 
JV9 H9  H9  H 0 1 N N N -5.582  -11.806 37.430 4.174  -1.721 0.612  H9  JV9 33 
JV9 H10 H10 H 0 1 N N N -4.853  -7.460  39.900 -0.426 -2.539 -1.412 H10 JV9 34 
JV9 H11 H11 H 0 1 N N N -6.451  -6.851  40.450 -1.546 -2.454 -0.030 H11 JV9 35 
JV9 H12 H12 H 0 1 N N N -6.623  -1.789  40.527 -0.073 5.010  1.087  H12 JV9 36 
JV9 H13 H13 H 0 1 N N N -6.569  -3.565  40.792 0.298  3.367  1.661  H13 JV9 37 
JV9 H14 H14 H 0 1 N N N -5.857  -2.857  39.302 0.396  3.746  -0.075 H14 JV9 38 
JV9 H16 H16 H 0 1 N N N -8.025  -2.176  38.689 -2.244 4.244  0.797  H16 JV9 39 
JV9 H17 H17 H 0 1 N N N -6.535  -10.957 39.585 2.296  -3.174 1.226  H17 JV9 40 
JV9 H18 H18 H 0 1 N N N -8.261  -7.955  35.726 -3.225 -2.224 0.351  H18 JV9 41 
JV9 H19 H19 H 0 1 N N N -10.379 -7.598  34.940 -5.337 -2.007 -0.657 H19 JV9 42 
JV9 H20 H20 H 0 1 N N N -11.484 -5.806  36.852 -5.512 0.751  -0.872 H20 JV9 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JV9 C21 O20 SING N N 1  
JV9 O20 C19 SING N N 2  
JV9 C18 C19 DOUB Y N 3  
JV9 C18 C17 SING Y N 4  
JV9 C19 C22 SING Y N 5  
JV9 C14 C15 SING N N 6  
JV9 C14 C13 SING N N 7  
JV9 C17 C16 DOUB Y N 8  
JV9 C15 C11 SING N N 9  
JV9 C13 C12 SING N N 10 
JV9 C22 C23 DOUB Y N 11 
JV9 C11 C12 DOUB Y N 12 
JV9 C11 N10 SING Y N 13 
JV9 C12 C05 SING Y N 14 
JV9 C16 C23 SING Y N 15 
JV9 C16 N04 SING N N 16 
JV9 N10 C07 DOUB Y N 17 
JV9 C23 N24 SING N N 18 
JV9 C05 N04 SING N N 19 
JV9 C05 N06 DOUB Y N 20 
JV9 N04 C03 SING N N 21 
JV9 C07 N06 SING Y N 22 
JV9 C07 N08 SING N N 23 
JV9 N24 C02 SING N N 24 
JV9 N08 C09 SING N N 25 
JV9 C03 C02 SING N N 26 
JV9 C02 O01 DOUB N N 27 
JV9 C13 H1  SING N N 28 
JV9 C14 H2  SING N N 29 
JV9 C15 H3  SING N N 30 
JV9 C17 H4  SING N N 31 
JV9 C18 H5  SING N N 32 
JV9 C21 H6  SING N N 33 
JV9 C21 H7  SING N N 34 
JV9 C21 H8  SING N N 35 
JV9 C22 H9  SING N N 36 
JV9 C03 H10 SING N N 37 
JV9 C03 H11 SING N N 38 
JV9 C09 H12 SING N N 39 
JV9 C09 H13 SING N N 40 
JV9 C09 H14 SING N N 41 
JV9 N08 H16 SING N N 42 
JV9 N24 H17 SING N N 43 
JV9 C13 H18 SING N N 44 
JV9 C14 H19 SING N N 45 
JV9 C15 H20 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JV9 SMILES           ACDLabs              12.01 "CNc1nc2CCCc2c(n1)N1CC(=O)Nc2cc(ccc21)OC"                                                                                                   
JV9 InChI            InChI                1.03  "InChI=1S/C17H19N5O2/c1-18-17-20-12-5-3-4-11(12)16(21-17)22-9-15(23)19-13-8-10(24-2)6-7-14(13)22/h6-8H,3-5,9H2,1-2H3,(H,19,23)(H,18,20,21)" 
JV9 InChIKey         InChI                1.03  BRTSQLXTBUCXNF-UHFFFAOYSA-N                                                                                                                 
JV9 SMILES_CANONICAL CACTVS               3.385 "CNc1nc2CCCc2c(n1)N3CC(=O)Nc4cc(OC)ccc34"                                                                                                   
JV9 SMILES           CACTVS               3.385 "CNc1nc2CCCc2c(n1)N3CC(=O)Nc4cc(OC)ccc34"                                                                                                   
JV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2"                                                                                                 
JV9 SMILES           "OpenEye OEToolkits" 2.0.7 "CNc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JV9 "SYSTEMATIC NAME" ACDLabs              12.01 "7-methoxy-4-[2-(methylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-3,4-dihydroquinoxalin-2(1H)-one" 
JV9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-methoxy-4-[2-(methylamino)-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl]-1,3-dihydroquinoxalin-2-one"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JV9 "Create component" 2022-02-02 RCSB 
JV9 "Initial release"  2023-04-12 RCSB 
# 
