data_JP9
# 
_chem_comp.id                                    JP9 
_chem_comp.name                                  "(3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-oxidanylidene-6-phosphonooxy-hexane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H13 O11 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-08 
_chem_comp.pdbx_modified_date                    2024-09-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        324.200 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JP9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8Q59 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JP9 C1  C1  C 0 1 N N N N N N -5.382 -50.092 20.029 1.458  -1.215 -0.085 C1  JP9 1  
JP9 C2  C2  C 0 1 N N N N N N -6.244 -51.285 19.616 2.393  -0.082 -0.419 C2  JP9 2  
JP9 C3  C3  C 0 1 N N S N N N -4.660 -49.418 18.917 0.047  -1.211 -0.615 C3  JP9 3  
JP9 C4  C4  C 0 1 N N S N N N -3.289 -50.185 18.913 -0.791 -0.204 0.174  C4  JP9 4  
JP9 C5  C5  C 0 1 N N S N N N -2.081 -49.780 17.936 -2.250 -0.288 -0.279 C5  JP9 5  
JP9 C6  C6  C 0 1 N N N N N N -0.483 -49.745 18.234 -3.088 0.719  0.510  C6  JP9 6  
JP9 S1  S1  S 0 1 N N N N N N 0.469  -48.493 17.276 -4.839 0.518  0.079  S1  JP9 7  
JP9 O2  O1  O 0 1 N N N N N N -5.552 -52.561 19.610 3.664  -0.316 0.190  O2  JP9 8  
JP9 O3  O2  O 0 1 N N N N N N -7.252 -54.459 19.540 6.127  0.185  0.960  O3  JP9 9  
JP9 O4  O3  O 0 1 N N N N N N -4.964 -54.891 18.858 5.378  0.746  -1.497 O4  JP9 10 
JP9 O5  O4  O 0 1 N N N N N N -6.327 -53.426 17.463 4.496  2.049  0.477  O5  JP9 11 
JP9 O6  O5  O 0 1 N N N N N N -4.989 -48.119 19.364 -0.518 -2.516 -0.475 O6  JP9 12 
JP9 O7  O6  O 0 1 N N N N N N -2.836 -50.310 20.258 -0.708 -0.503 1.569  O7  JP9 13 
JP9 O8  O7  O 0 1 N N N N N N -2.169 -50.731 16.907 -2.333 0.012  -1.674 O8  JP9 14 
JP9 O9  O8  O 0 1 N N N N N N -0.382 -48.294 16.123 -5.332 -0.723 0.565  O9  JP9 15 
JP9 O10 O9  O 0 1 N N N N N N 0.588  -47.259 18.041 -5.559 1.563  0.919  O10 JP9 16 
JP9 O11 O10 O 0 1 N N N N N N 1.798  -48.977 16.912 -5.073 0.924  -1.262 O11 JP9 17 
JP9 O1  O11 O 0 1 N N N N N N -5.253 -49.578 21.170 1.841  -2.130 0.605  O1  JP9 18 
JP9 P1  P1  P 0 1 N N N N N N -6.044 -53.868 18.827 4.907  0.696  0.042  P1  JP9 19 
JP9 H1  H1  H 0 1 N N N N N N -6.625 -51.097 18.601 2.514  -0.018 -1.501 H1  JP9 20 
JP9 H2  H2  H 0 1 N N N N N N -7.088 -51.357 20.317 1.977  0.854  -0.045 H2  JP9 21 
JP9 H3  H3  H 0 1 N N N N N N -5.175 -49.635 17.969 0.056  -0.930 -1.668 H3  JP9 22 
JP9 H4  H4  H 0 1 N N N N N N -3.553 -51.204 18.594 -0.413 0.803  -0.004 H4  JP9 23 
JP9 H5  H5  H 0 1 N N N N N N -2.335 -48.792 17.525 -2.628 -1.294 -0.101 H5  JP9 24 
JP9 H6  H6  H 0 1 N N N N N N -0.072 -50.738 17.999 -2.954 0.546  1.578  H6  JP9 25 
JP9 H7  H7  H 0 1 N N N N N N -0.341 -49.534 19.304 -2.768 1.732  0.263  H7  JP9 26 
JP9 H8  H8  H 0 1 N N N N N N -8.004 -54.439 18.960 6.912  0.748  0.920  H8  JP9 27 
JP9 H9  H9  H 0 1 N N N N N N -4.663 -55.061 17.973 5.662  -0.108 -1.850 H9  JP9 28 
JP9 H10 H10 H 0 1 N N N N N N -5.235 -48.152 20.281 -0.558 -2.831 0.439  H10 JP9 29 
JP9 H11 H11 H 0 1 N N N N N N -3.544 -50.093 20.853 -1.028 -1.386 1.801  H11 JP9 30 
JP9 H12 H12 H 0 1 N N N N N N -3.077 -50.835 16.648 -2.013 0.894  -1.906 H12 JP9 31 
JP9 H13 H13 H 0 1 N N N N N N 1.506  -47.034 18.139 -6.518 1.575  0.794  H13 JP9 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JP9 O9  S1  DOUB N N 1  
JP9 O8  C5  SING N N 2  
JP9 O11 S1  DOUB N N 3  
JP9 S1  O10 SING N N 4  
JP9 S1  C6  SING N N 5  
JP9 O5  P1  DOUB N N 6  
JP9 C5  C6  SING N N 7  
JP9 C5  C4  SING N N 8  
JP9 P1  O4  SING N N 9  
JP9 P1  O3  SING N N 10 
JP9 P1  O2  SING N N 11 
JP9 C4  C3  SING N N 12 
JP9 C4  O7  SING N N 13 
JP9 C3  O6  SING N N 14 
JP9 C3  C1  SING N N 15 
JP9 O2  C2  SING N N 16 
JP9 C2  C1  SING N N 17 
JP9 C1  O1  DOUB N N 18 
JP9 C2  H1  SING N N 19 
JP9 C2  H2  SING N N 20 
JP9 C3  H3  SING N N 21 
JP9 C4  H4  SING N N 22 
JP9 C5  H5  SING N N 23 
JP9 C6  H6  SING N N 24 
JP9 C6  H7  SING N N 25 
JP9 O3  H8  SING N N 26 
JP9 O4  H9  SING N N 27 
JP9 O6  H10 SING N N 28 
JP9 O7  H11 SING N N 29 
JP9 O8  H12 SING N N 30 
JP9 O10 H13 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JP9 SMILES           ACDLabs              14.52 "OC(C(O)CS(=O)(=O)O)C(O)C(=O)COP(=O)(O)O"                                                                                         
JP9 InChI            InChI                1.06  "InChI=1S/C6H13O11PS/c7-3(1-17-18(11,12)13)5(9)6(10)4(8)2-19(14,15)16/h4-6,8-10H,1-2H2,(H2,11,12,13)(H,14,15,16)/t4-,5-,6-/m1/s1" 
JP9 InChIKey         InChI                1.06  BXFAKMQEOMYBNM-HSUXUTPPSA-N                                                                                                       
JP9 SMILES_CANONICAL CACTVS               3.385 "O[C@H](C[S](O)(=O)=O)[C@@H](O)[C@H](O)C(=O)CO[P](O)(O)=O"                                                                        
JP9 SMILES           CACTVS               3.385 "O[CH](C[S](O)(=O)=O)[CH](O)[CH](O)C(=O)CO[P](O)(O)=O"                                                                            
JP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]([C@H]([C@@H](C(=O)COP(=O)(O)O)O)O)O)S(=O)(=O)O"                                                                          
JP9 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C(C(C(C(=O)COP(=O)(O)O)O)O)O)S(=O)(=O)O"                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JP9 "SYSTEMATIC NAME" ACDLabs              14.52 6-deoxy-1-O-phosphono-6-sulfo-D-fructose                                                         
JP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-oxidanylidene-6-phosphonooxy-hexane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JP9 "Create component" 2023-08-08 PDBE 
JP9 "Initial release"  2023-10-25 RCSB 
JP9 "Modify formula"   2024-09-16 RCSB 
# 
