data_JA9
#

_chem_comp.id                                   JA9
_chem_comp.name                                 "6-[2,3-bis(chloranyl)phenoxy]-5-chloranyl-2-methylsulfanyl-1H-benzimidazole"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H9 Cl3 N2 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Triclabendazole
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-07
_chem_comp.pdbx_modified_date                   2021-11-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       359.658
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JA9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7ERI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JA9  CAA  C1   C   0  1  Y  N  N  -21.760  -1.374   -8.044   1.465  -0.869   1.088  CAA  JA9   1  
JA9  CAB  C2   C   0  1  Y  N  N  -22.036  -0.049   -8.357   1.948  -0.252  -0.057  CAB  JA9   2  
JA9  CAC  C3   C   0  1  Y  N  N  -21.331  -2.245   -9.036   2.341  -1.487   1.960  CAC  JA9   3  
JA9  CAD  C4   C   0  1  Y  N  N  -21.900   0.436   -9.665   3.309  -0.261  -0.327  CAD  JA9   4  
JA9  CAE  C5   C   0  1  Y  N  N  -21.190  -1.779  -10.339   3.697  -1.496   1.690  CAE  JA9   5  
JA9  CAF  C6   C   0  1  Y  N  N  -21.465  -0.449  -10.657   4.181  -0.886   0.547  CAF  JA9   6  
JA9  CAH  C7   C   0  1  Y  N  N  -21.926   0.689   -6.137  -0.221   0.441  -0.556  CAH  JA9   7  
JA9  CAI  C8   C   0  1  Y  N  N  -20.654   1.184   -5.946  -0.659   1.497   0.238  CAI  JA9   8  
JA9  CAJ  C9   C   0  1  Y  N  N  -22.585   0.144   -5.042  -1.113  -0.526  -0.987  CAJ  JA9   9  
JA9  CAK  C10  C   0  1  Y  N  N  -20.074   1.097   -4.693  -1.984   1.592   0.603  CAK  JA9  10  
JA9  CAL  C11  C   0  1  Y  N  N  -21.981   0.079   -3.850  -2.449  -0.441  -0.626  CAL  JA9  11  
JA9  CAM  C12  C   0  1  Y  N  N  -20.741   0.548   -3.686  -2.895   0.623   0.175  CAM  JA9  12  
JA9  CAO  C13  C   0  1  Y  N  N  -21.393  -0.224   -1.804  -4.626  -0.633  -0.257  CAO  JA9  13  
JA9  CAT  C14  C   0  1  N  N  N  -20.425  -2.179   -0.089  -7.091   0.019   0.736  CAT  JA9  14  
JA9  NAN  N1   N   0  1  Y  N  N  -20.380   0.357   -2.422  -4.230   0.450   0.365  NAN  JA9  15  
JA9  NAP  N2   N   0  1  Y  N  N  -22.389  -0.403   -2.671  -3.564  -1.222  -0.886  NAP  JA9  16  
JA9  OAG  O1   O   0  1  N  N  N  -22.464   0.825   -7.396   1.088   0.361  -0.914  OAG  JA9  17  
JA9  SAS  S1   S   0  1  N  N  N  -21.387  -0.680   -0.058  -6.280  -1.242  -0.278  SAS  JA9  18  
JA9  CLQ  CL1  CL  0  0  N  N  N  -19.828   1.854   -7.188   0.471   2.702   0.771  CLQ  JA9  19  
JA9  CLR  CL2  CL  0  0  N  N  N  -21.254   0.033  -12.317   5.885  -0.899   0.211  CLR  JA9  20  
JA9  CLU  CL3  CL  0  0  N  N  N  -22.270   2.183  -10.070   3.917   0.510  -1.759  CLU  JA9  21  
JA9  H1   H1   H   0  1  N  N  N  -21.879  -1.726   -7.030   0.407  -0.863   1.300  H1   JA9  22  
JA9  H2   H2   H   0  1  N  N  N  -21.109  -3.275   -8.798   1.966  -1.963   2.853  H2   JA9  23  
JA9  H3   H3   H   0  1  N  N  N  -20.863  -2.456  -11.115   4.379  -1.979   2.374  H3   JA9  24  
JA9  H4   H4   H   0  1  N  N  N  -23.592  -0.230   -5.154  -0.770  -1.344  -1.603  H4   JA9  25  
JA9  H5   H5   H   0  1  N  N  N  -19.076   1.477   -4.534  -2.318   2.414   1.220  H5   JA9  26  
JA9  H6   H6   H   0  1  N  N  N  -20.336  -2.579    0.932  -6.972   0.995   0.266  H6   JA9  27  
JA9  H7   H7   H   0  1  N  N  N  -20.922  -2.920   -0.732  -8.152  -0.214   0.825  H7   JA9  28  
JA9  H8   H8   H   0  1  N  N  N  -19.422  -1.963   -0.487  -6.638   0.035   1.727  H8   JA9  29  
JA9  H10  H10  H   0  1  N  N  N  -23.277  -0.820   -2.476  -3.587  -2.034  -1.414  H10  JA9  30  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JA9  CLR  CAF  SING  N  N   1  
JA9  CAF  CAE  DOUB  Y  N   2  
JA9  CAF  CAD  SING  Y  N   3  
JA9  CAE  CAC  SING  Y  N   4  
JA9  CLU  CAD  SING  N  N   5  
JA9  CAD  CAB  DOUB  Y  N   6  
JA9  CAC  CAA  DOUB  Y  N   7  
JA9  CAB  CAA  SING  Y  N   8  
JA9  CAB  OAG  SING  N  N   9  
JA9  OAG  CAH  SING  N  N  10  
JA9  CLQ  CAI  SING  N  N  11  
JA9  CAH  CAI  SING  Y  N  12  
JA9  CAH  CAJ  DOUB  Y  N  13  
JA9  CAI  CAK  DOUB  Y  N  14  
JA9  CAJ  CAL  SING  Y  N  15  
JA9  CAK  CAM  SING  Y  N  16  
JA9  CAL  CAM  DOUB  Y  N  17  
JA9  CAL  NAP  SING  Y  N  18  
JA9  CAM  NAN  SING  Y  N  19  
JA9  NAP  CAO  SING  Y  N  20  
JA9  NAN  CAO  DOUB  Y  N  21  
JA9  CAO  SAS  SING  N  N  22  
JA9  CAT  SAS  SING  N  N  23  
JA9  CAA  H1   SING  N  N  24  
JA9  CAC  H2   SING  N  N  25  
JA9  CAE  H3   SING  N  N  26  
JA9  CAJ  H4   SING  N  N  27  
JA9  CAK  H5   SING  N  N  28  
JA9  CAT  H6   SING  N  N  29  
JA9  CAT  H7   SING  N  N  30  
JA9  CAT  H8   SING  N  N  31  
JA9  NAP  H10  SING  N  N  32  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JA9  InChI             InChI                 1.03   "InChI=1S/C14H9Cl3N2OS/c1-21-14-18-9-5-8(16)12(6-10(9)19-14)20-11-4-2-3-7(15)13(11)17/h2-6H,1H3,(H,18,19)"  
JA9  InChIKey          InChI                 1.03   NQPDXQQQCQDHHW-UHFFFAOYSA-N  
JA9  SMILES_CANONICAL  CACTVS                3.385  "CSc1[nH]c2cc(Oc3cccc(Cl)c3Cl)c(Cl)cc2n1"  
JA9  SMILES            CACTVS                3.385  "CSc1[nH]c2cc(Oc3cccc(Cl)c3Cl)c(Cl)cc2n1"  
JA9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CSc1[nH]c2cc(c(cc2n1)Cl)Oc3cccc(c3Cl)Cl"  
JA9  SMILES            "OpenEye OEToolkits"  2.0.7  "CSc1[nH]c2cc(c(cc2n1)Cl)Oc3cccc(c3Cl)Cl"  
#
_pdbx_chem_comp_identifier.comp_id          JA9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "6-[2,3-bis(chloranyl)phenoxy]-5-chloranyl-2-methylsulfanyl-1~{H}-benzimidazole"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     JA9
_pdbx_chem_comp_synonyms.name        Triclabendazole
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JA9  "Create component"  2021-05-07  PDBJ  
JA9  "Initial release"   2021-11-24  RCSB  
##
