data_J79
#

_chem_comp.id                                   J79
_chem_comp.name                                 "(2R)-2-[(2R,3R,4R,5S,6R)-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H20 N O11 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-04-19
_chem_comp.pdbx_modified_date                   2022-04-15
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       373.250
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    J79
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EN7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
J79  C02  C1   C  0  1  N  N  S   2.522  -12.121  -10.934   0.132  -1.034  -0.338  C02  J79   1  
J79  C03  C2   C  0  1  N  N  R   3.944  -12.114  -10.495  -1.206  -0.539   0.220  C03  J79   2  
J79  C05  C3   C  0  1  N  N  R   5.569  -10.673  -11.539  -3.357  -1.566   0.467  C05  J79   3  
J79  C06  C4   C  0  1  N  N  N   5.066   -9.635  -12.580  -3.097  -2.925   1.118  C06  J79   4  
J79  C07  C5   C  0  1  N  N  N   7.014  -11.076  -11.760  -4.642  -1.623  -0.318  C07  J79   5  
J79  C10  C6   C  0  1  N  N  R   4.343  -13.421   -9.900  -1.341   0.960  -0.064  C10  J79   6  
J79  C12  C7   C  0  1  N  N  N   6.752  -14.241   -9.885  -3.239   2.488  -0.046  C12  J79   7  
J79  C13  C8   C  0  1  N  N  N   8.175  -14.104   -9.293  -4.517   3.003   0.564  C13  J79   8  
J79  C15  C9   C  0  1  N  N  R   3.450  -13.799   -8.743  -0.147   1.698   0.548  C15  J79   9  
J79  C18  C10  C  0  1  N  N  R   1.653  -12.538   -9.761   1.269  -0.220   0.286  C18  J79  10  
J79  C19  C11  C  0  1  N  N  N   0.216  -12.678  -10.184   2.605  -0.668  -0.311  C19  J79  11  
J79  N11  N1   N  0  1  N  N  N   5.729  -13.345   -9.378  -2.583   1.461   0.530  N11  J79  12  
J79  O01  O1   O  0  1  N  N  N   2.138  -10.796  -11.344   0.302  -2.416  -0.014  O01  J79  13  
J79  O04  O2   O  0  1  N  N  N   4.788  -11.846  -11.663  -2.277  -1.243  -0.411  O04  J79  14  
J79  O08  O3   O  0  1  N  N  N   7.300  -11.897  -12.671  -4.622  -1.499  -1.520  O08  J79  15  
J79  O09  O4   O  0  1  N  N  N   7.910  -10.598  -11.041  -5.810  -1.811   0.318  O09  J79  16  
J79  O14  O5   O  0  1  N  N  N   6.500  -15.037  -10.719  -2.801   2.997  -1.056  O14  J79  17  
J79  O16  O6   O  0  1  N  N  N   3.716  -15.066   -8.288  -0.237   3.090   0.239  O16  J79  18  
J79  O17  O7   O  0  1  N  N  N   2.074  -13.847   -9.262   1.066   1.168   0.010  O17  J79  19  
J79  O20  O8   O  0  1  N  N  N   0.158  -13.637  -11.219   3.674   0.009   0.353  O20  J79  20  
J79  O22  O9   O  0  1  N  N  N  -1.549  -12.540  -12.782   5.497   0.297  -1.519  O22  J79  21  
J79  O23  O10  O  0  1  N  N  N  -2.339  -14.027  -10.943   6.151   0.598   1.010  O23  J79  22  
J79  O24  O11  O  0  1  N  N  N  -1.098  -15.026  -12.890   5.543  -1.664   0.069  O24  J79  23  
J79  P21  P1   P  0  1  N  N  N  -1.294  -13.818  -11.998   5.223  -0.222  -0.020  P21  J79  24  
J79  H1   H1   H  0  1  N  N  N   2.389  -12.835  -11.760   0.145  -0.908  -1.420  H1   J79  25  
J79  H2   H2   H  0  1  N  N  N   4.088  -11.319   -9.748  -1.238  -0.710   1.296  H2   J79  26  
J79  H3   H3   H  0  1  N  N  N   5.464  -10.242  -10.532  -3.437  -0.802   1.240  H3   J79  27  
J79  H4   H4   H  0  1  N  N  N   4.016   -9.383  -12.369  -2.932  -3.674   0.344  H4   J79  28  
J79  H5   H5   H  0  1  N  N  N   5.681   -8.725  -12.517  -2.214  -2.860   1.754  H5   J79  29  
J79  H6   H6   H  0  1  N  N  N   5.144  -10.062  -13.591  -3.959  -3.210   1.722  H6   J79  30  
J79  H7   H7   H  0  1  N  N  N   4.285  -14.204  -10.670  -1.359   1.127  -1.141  H7   J79  31  
J79  H8   H8   H  0  1  N  N  N   8.843  -14.837   -9.769  -4.750   2.426   1.459  H8   J79  32  
J79  H9   H9   H  0  1  N  N  N   8.554  -13.088   -9.480  -4.395   4.053   0.831  H9   J79  33  
J79  H10  H10  H  0  1  N  N  N   8.140  -14.289   -8.209  -5.330   2.903  -0.155  H10  J79  34  
J79  H11  H11  H  0  1  N  N  N   3.534  -13.048   -7.944  -0.154   1.564   1.630  H11  J79  35  
J79  H12  H12  H  0  1  N  N  N   1.731  -11.785   -8.963   1.281  -0.378   1.364  H12  J79  36  
J79  H13  H13  H  0  1  N  N  N  -0.162  -11.711  -10.549   2.718  -1.744  -0.179  H13  J79  37  
J79  H14  H14  H  0  1  N  N  N  -0.394  -13.012   -9.331   2.627  -0.428  -1.374  H14  J79  38  
J79  H15  H15  H  0  1  N  N  N   5.960  -12.674   -8.674  -2.933   1.054   1.337  H15  J79  39  
J79  H16  H16  H  0  1  N  N  N   1.230  -10.801  -11.624   1.130  -2.796  -0.338  H16  J79  40  
J79  H17  H17  H  0  1  N  N  N   8.751  -10.951  -11.306  -6.607  -1.840  -0.228  H17  J79  41  
J79  H18  H18  H  0  1  N  N  N   3.138  -15.270   -7.562   0.488   3.620   0.597  H18  J79  42  
J79  H19  H19  H  0  1  N  N  N  -1.540  -12.732  -13.712   5.309   1.236  -1.651  H19  J79  43  
J79  H20  H20  H  0  1  N  N  N  -2.701  -14.902  -11.024   7.099   0.504   0.845  H20  J79  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
J79  O24  P21  DOUB  N  N   1  
J79  O22  P21  SING  N  N   2  
J79  O08  C07  DOUB  N  N   3  
J79  C06  C05  SING  N  N   4  
J79  P21  O20  SING  N  N   5  
J79  P21  O23  SING  N  N   6  
J79  C07  C05  SING  N  N   7  
J79  C07  O09  SING  N  N   8  
J79  O04  C05  SING  N  N   9  
J79  O04  C03  SING  N  N  10  
J79  O01  C02  SING  N  N  11  
J79  O20  C19  SING  N  N  12  
J79  C02  C03  SING  N  N  13  
J79  C02  C18  SING  N  N  14  
J79  O14  C12  DOUB  N  N  15  
J79  C03  C10  SING  N  N  16  
J79  C19  C18  SING  N  N  17  
J79  C10  N11  SING  N  N  18  
J79  C10  C15  SING  N  N  19  
J79  C12  N11  SING  N  N  20  
J79  C12  C13  SING  N  N  21  
J79  C18  O17  SING  N  N  22  
J79  O17  C15  SING  N  N  23  
J79  C15  O16  SING  N  N  24  
J79  C02  H1   SING  N  N  25  
J79  C03  H2   SING  N  N  26  
J79  C05  H3   SING  N  N  27  
J79  C06  H4   SING  N  N  28  
J79  C06  H5   SING  N  N  29  
J79  C06  H6   SING  N  N  30  
J79  C10  H7   SING  N  N  31  
J79  C13  H8   SING  N  N  32  
J79  C13  H9   SING  N  N  33  
J79  C13  H10  SING  N  N  34  
J79  C15  H11  SING  N  N  35  
J79  C18  H12  SING  N  N  36  
J79  C19  H13  SING  N  N  37  
J79  C19  H14  SING  N  N  38  
J79  N11  H15  SING  N  N  39  
J79  O01  H16  SING  N  N  40  
J79  O09  H17  SING  N  N  41  
J79  O16  H18  SING  N  N  42  
J79  O22  H19  SING  N  N  43  
J79  O23  H20  SING  N  N  44  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
J79  InChI             InChI                 1.03   "InChI=1S/C11H20NO11P/c1-4(10(15)16)22-9-7(12-5(2)13)11(17)23-6(8(9)14)3-21-24(18,19)20/h4,6-9,11,14,17H,3H2,1-2H3,(H,12,13)(H,15,16)(H2,18,19,20)/t4-,6-,7-,8-,9-,11-/m1/s1"  
J79  InChIKey          InChI                 1.03   NMEMTQKUEVNSPV-YVNCZSHWSA-N  
J79  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](O[C@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@@H](O)[C@@H]1NC(C)=O)C(O)=O"  
J79  SMILES            CACTVS                3.385  "C[CH](O[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH](O)[CH]1NC(C)=O)C(O)=O"  
J79  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@@H](O[C@@H]([C@H]1O)COP(=O)(O)O)O)NC(=O)C"  
J79  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C(=O)O)OC1C(C(OC(C1O)COP(=O)(O)O)O)NC(=O)C"  
#
_pdbx_chem_comp_identifier.comp_id          J79
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-2-[(2~{R},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
J79  "Create component"  2021-04-19  PDBJ  
J79  "Initial release"   2022-04-20  RCSB  
##
