data_HJ9
# 
_chem_comp.id                                    HJ9 
_chem_comp.name                                  "[4-[5-[5-(dimethylcarbamoyl)pyridin-3-yl]-1H-pyrrolo[2,3-b]pyridin-3-yl]-2-methanoyl-5-methoxy-phenyl]boronic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H21 B N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        444.248 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HJ9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7DT2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HJ9 B33 B1  B 0 1 N N N N N N 123.163 19.771 7.406  5.974  1.924  0.231  B33 HJ9 1  
HJ9 C02 C1  C 0 1 N N N N N N 114.550 13.221 1.741  -6.405 1.295  -0.435 C02 HJ9 2  
HJ9 C04 C2  C 0 1 N N N N N N 115.175 10.714 1.449  -6.285 -0.720 0.929  C04 HJ9 3  
HJ9 C05 C3  C 0 1 N N N N N N 113.496 11.843 -0.127 -8.513 0.251  0.200  C05 HJ9 4  
HJ9 C06 C4  C 0 1 Y N N N N N 115.533 13.350 2.970  -4.932 1.391  -0.361 C06 HJ9 5  
HJ9 C07 C5  C 0 1 Y N N N N N 115.084 13.534 4.269  -4.304 2.638  -0.322 C07 HJ9 6  
HJ9 C09 C6  C 0 1 Y N N N N N 117.255 13.589 5.072  -2.217 1.665  -0.224 C09 HJ9 7  
HJ9 C10 C7  C 0 1 Y N N N N N 117.766 13.415 3.800  -2.761 0.382  -0.255 C10 HJ9 8  
HJ9 C11 C8  C 0 1 Y N N N N N 119.304 13.334 3.488  -1.878 -0.811 -0.220 C11 HJ9 9  
HJ9 C12 C9  C 0 1 Y N N N N N 119.765 12.295 2.679  -2.424 -2.096 -0.257 C12 HJ9 10 
HJ9 C14 C10 C 0 1 Y N N N N N 121.948 13.074 2.851  -0.337 -3.079 -0.160 C14 HJ9 11 
HJ9 C16 C11 C 0 1 Y N N N N N 123.777 14.205 3.330  1.884  -3.425 -0.058 C16 HJ9 12 
HJ9 C17 C12 C 0 1 Y N N N N N 122.737 14.885 3.974  1.732  -2.076 -0.052 C17 HJ9 13 
HJ9 C18 C13 C 0 1 Y N N N N N 122.861 16.190 4.868  2.810  -1.064 0.013  C18 HJ9 14 
HJ9 C19 C14 C 0 1 Y N N N N N 123.610 17.280 4.422  3.718  -0.946 -1.036 C19 HJ9 15 
HJ9 C20 C15 C 0 1 Y N N N N N 123.733 18.442 5.213  4.732  0.007  -0.973 C20 HJ9 16 
HJ9 C21 C16 C 0 1 N N N N N N 124.572 19.617 4.679  5.693  0.137  -2.079 C21 HJ9 17 
HJ9 C32 C17 C 0 1 Y N N N N N 123.088 18.504 6.463  4.833  0.849  0.154  C32 HJ9 18 
HJ9 C36 C18 C 0 1 Y N N N N N 122.331 17.412 6.907  3.923  0.724  1.197  C36 HJ9 19 
HJ9 C37 C19 C 0 1 Y N N N N N 122.214 16.254 6.123  2.913  -0.222 1.129  C37 HJ9 20 
HJ9 C39 C20 C 0 1 N N N N N N 121.037 15.266 7.954  2.186  0.554  3.254  C39 HJ9 21 
HJ9 C40 C21 C 0 1 Y N N N N N 121.563 14.140 3.659  0.285  -1.818 -0.124 C40 HJ9 22 
HJ9 C41 C22 C 0 1 Y N N N N N 120.202 14.279 3.987  -0.494 -0.664 -0.155 C41 HJ9 23 
HJ9 C42 C23 C 0 1 Y N N N N N 116.885 13.296 2.724  -4.146 0.235  -0.325 C42 HJ9 24 
HJ9 N03 N1  N 0 1 N N N N N N 114.404 11.932 1.014  -7.049 0.304  0.212  N03 HJ9 25 
HJ9 N08 N2  N 0 1 Y N N N N N 115.948 13.646 5.279  -2.992 2.731  -0.256 N08 HJ9 26 
HJ9 N13 N3  N 0 1 Y N N N N N 121.057 12.192 2.385  -1.660 -3.165 -0.227 N13 HJ9 27 
HJ9 N15 N4  N 0 1 Y N N N N N 123.285 13.147 2.676  0.660  -4.026 -0.118 N15 HJ9 28 
HJ9 O01 O1  O 0 1 N N N N N N 113.951 14.155 1.392  -7.036 2.110  -1.079 O01 HJ9 29 
HJ9 O34 O2  O 0 1 N N N N N N 124.328 20.378 7.623  5.650  3.288  0.460  O34 HJ9 30 
HJ9 O35 O3  O 0 1 N N N N N N 122.223 19.880 8.378  7.331  1.533  0.078  O35 HJ9 31 
HJ9 O38 O4  O 0 1 N N N N N N 121.458 15.167 6.583  2.023  -0.336 2.148  O38 HJ9 32 
HJ9 H1  H1  H 0 1 N N N N N N 115.802 10.967 2.316  -5.985 -1.503 0.232  H1  HJ9 33 
HJ9 H2  H2  H 0 1 N N N N N N 114.472 9.915  1.726  -5.398 -0.268 1.372  H2  HJ9 34 
HJ9 H3  H3  H 0 1 N N N N N N 115.814 10.370 0.622  -6.904 -1.152 1.715  H3  HJ9 35 
HJ9 H4  H4  H 0 1 N N N N N N 113.024 12.822 -0.298 -8.905 0.812  1.048  H4  HJ9 36 
HJ9 H5  H5  H 0 1 N N N N N N 114.061 11.548 -1.023 -8.885 0.688  -0.727 H5  HJ9 37 
HJ9 H6  H6  H 0 1 N N N N N N 112.719 11.092 0.080  -8.840 -0.787 0.269  H6  HJ9 38 
HJ9 H7  H7  H 0 1 N N N N N N 114.023 13.587 4.465  -4.902 3.537  -0.345 H7  HJ9 39 
HJ9 H8  H8  H 0 1 N N N N N N 117.931 13.680 5.909  -1.145 1.788  -0.170 H8  HJ9 40 
HJ9 H9  H9  H 0 1 N N N N N N 119.067 11.569 2.289  -3.496 -2.214 -0.310 H9  HJ9 41 
HJ9 H10 H10 H 0 1 N N N N N N 124.818 14.491 3.357  2.830  -3.944 -0.015 H10 HJ9 42 
HJ9 H11 H11 H 0 1 N N N N N N 124.101 17.234 3.461  3.637  -1.592 -1.898 H11 HJ9 43 
HJ9 H12 H12 H 0 1 N N N N N N 124.271 20.121 3.772  5.570  -0.457 -2.973 H12 HJ9 44 
HJ9 H15 H15 H 0 1 N N N N N N 121.832 17.462 7.863  4.001  1.368  2.060  H15 HJ9 45 
HJ9 H16 H16 H 0 1 N N N N N N 120.454 14.374 8.224  3.167  0.400  3.703  H16 HJ9 46 
HJ9 H17 H17 H 0 1 N N N N N N 121.921 15.337 8.605  2.103  1.584  2.907  H17 HJ9 47 
HJ9 H18 H18 H 0 1 N N N N N N 120.414 16.164 8.082  1.411  0.357  3.995  H18 HJ9 48 
HJ9 H19 H19 H 0 1 N N N N N N 119.861 15.094 4.608  -0.039 0.316  -0.129 H19 HJ9 49 
HJ9 H20 H20 H 0 1 N N N N N N 117.257 13.164 1.719  -4.600 -0.744 -0.350 H20 HJ9 50 
HJ9 H21 H21 H 0 1 N N N N N N 123.828 12.504 2.136  0.515  -4.985 -0.129 H21 HJ9 51 
HJ9 H22 H22 H 0 1 N N N N N N 122.372 20.676 8.875  7.960  2.264  0.145  H22 HJ9 52 
HJ9 O1  O5  O 0 1 N N N N N N 125.621 20.002 5.299  6.623  0.909  -1.987 O1  HJ9 53 
HJ9 H13 H13 H 0 1 N N N N N N 124.873 20.304 6.849  4.700  3.469  0.475  H13 HJ9 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HJ9 C05 N03 SING N N 1  
HJ9 N03 C04 SING N N 2  
HJ9 N03 C02 SING N N 3  
HJ9 O01 C02 DOUB N N 4  
HJ9 C02 C06 SING N N 5  
HJ9 N13 C12 DOUB Y N 6  
HJ9 N13 C14 SING Y N 7  
HJ9 N15 C14 SING Y N 8  
HJ9 N15 C16 SING Y N 9  
HJ9 C12 C11 SING Y N 10 
HJ9 C42 C06 DOUB Y N 11 
HJ9 C42 C10 SING Y N 12 
HJ9 C14 C40 DOUB Y N 13 
HJ9 C06 C07 SING Y N 14 
HJ9 C16 C17 DOUB Y N 15 
HJ9 C11 C10 SING N N 16 
HJ9 C11 C41 DOUB Y N 17 
HJ9 C40 C17 SING Y N 18 
HJ9 C40 C41 SING Y N 19 
HJ9 C10 C09 DOUB Y N 20 
HJ9 C17 C18 SING N N 21 
HJ9 C07 N08 DOUB Y N 22 
HJ9 C19 C18 DOUB Y N 23 
HJ9 C19 C20 SING Y N 24 
HJ9 C21 C20 SING N N 25 
HJ9 C18 C37 SING Y N 26 
HJ9 C09 N08 SING Y N 27 
HJ9 C20 C32 DOUB Y N 28 
HJ9 C37 O38 SING N N 29 
HJ9 C37 C36 DOUB Y N 30 
HJ9 C32 C36 SING Y N 31 
HJ9 C32 B33 SING N N 32 
HJ9 O38 C39 SING N N 33 
HJ9 B33 O34 SING N N 34 
HJ9 B33 O35 SING N N 35 
HJ9 C04 H1  SING N N 36 
HJ9 C04 H2  SING N N 37 
HJ9 C04 H3  SING N N 38 
HJ9 C05 H4  SING N N 39 
HJ9 C05 H5  SING N N 40 
HJ9 C05 H6  SING N N 41 
HJ9 C07 H7  SING N N 42 
HJ9 C09 H8  SING N N 43 
HJ9 C12 H9  SING N N 44 
HJ9 C16 H10 SING N N 45 
HJ9 C19 H11 SING N N 46 
HJ9 C21 H12 SING N N 47 
HJ9 C36 H15 SING N N 48 
HJ9 C39 H16 SING N N 49 
HJ9 C39 H17 SING N N 50 
HJ9 C39 H18 SING N N 51 
HJ9 C41 H19 SING N N 52 
HJ9 C42 H20 SING N N 53 
HJ9 N15 H21 SING N N 54 
HJ9 O35 H22 SING N N 55 
HJ9 C21 O1  DOUB N N 56 
HJ9 O34 H13 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HJ9 InChI            InChI                1.03  "InChI=1S/C23H21BN4O5/c1-28(2)23(30)15-4-13(8-25-9-15)14-5-18-19(11-27-22(18)26-10-14)17-6-16(12-29)20(24(31)32)7-21(17)33-3/h4-12,31-32H,1-3H3,(H,26,27)" 
HJ9 InChIKey         InChI                1.03  MFUWKLKLGDWHFU-UHFFFAOYSA-N                                                                                                                                
HJ9 SMILES_CANONICAL CACTVS               3.385 "COc1cc(B(O)O)c(C=O)cc1c2c[nH]c3ncc(cc23)c4cncc(c4)C(=O)N(C)C"                                                                                             
HJ9 SMILES           CACTVS               3.385 "COc1cc(B(O)O)c(C=O)cc1c2c[nH]c3ncc(cc23)c4cncc(c4)C(=O)N(C)C"                                                                                             
HJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B(c1cc(c(cc1C=O)c2c[nH]c3c2cc(cn3)c4cc(cnc4)C(=O)N(C)C)OC)(O)O"                                                                                           
HJ9 SMILES           "OpenEye OEToolkits" 2.0.7 "B(c1cc(c(cc1C=O)c2c[nH]c3c2cc(cn3)c4cc(cnc4)C(=O)N(C)C)OC)(O)O"                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           HJ9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[4-[5-[5-(dimethylcarbamoyl)pyridin-3-yl]-1~{H}-pyrrolo[2,3-b]pyridin-3-yl]-2-methanoyl-5-methoxy-phenyl]boronic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HJ9 "Create component" 2021-01-13 PDBJ 
HJ9 "Initial release"  2021-06-09 RCSB 
HJ9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            HJ9 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
