data_H39
# 
_chem_comp.id                                    H39 
_chem_comp.name                                  "5-[(2S)-4-methyl-2-{[(1H-pyrrol-3-ylacetyl)amino]methyl}pentyl]-1,3-benzodioxole-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H26 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-12-23 
_chem_comp.pdbx_modified_date                    2014-01-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.442 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H39 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4CJK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H39 C1   C1   C 0 1 Y N N 32.529 -31.727 1.005  -1.978 1.124  1.802  C1   H39 1  
H39 C2   C2   C 0 1 Y N N 32.075 -32.507 2.045  -2.579 2.318  1.439  C2   H39 2  
H39 C3   C3   C 0 1 Y N N 36.688 -32.576 -5.631 6.150  0.690  0.176  C3   H39 3  
H39 C4   C4   C 0 1 Y N N 37.383 -32.280 -6.782 6.910  1.802  0.242  C4   H39 4  
H39 C5   C5   C 0 1 Y N N 38.877 -32.842 -5.224 5.156  2.272  -1.028 C5   H39 5  
H39 C6   C6   C 0 1 Y N N 32.509 -33.597 -0.504 -3.211 -0.024 0.088  C6   H39 6  
H39 C7   C7   C 0 1 Y N N 32.756 -32.247 -0.263 -2.286 -0.042 1.137  C7   H39 7  
H39 C8   C8   C 0 1 Y N N 37.633 -32.932 -4.638 5.036  0.988  -0.634 C8   H39 8  
H39 C9   C9   C 0 1 Y N N 31.842 -33.832 1.788  -3.501 2.352  0.406  C9   H39 9  
H39 C10  C10  C 0 1 Y N N 32.059 -34.358 0.551  -3.827 1.180  -0.273 C10  H39 10 
H39 C11  C11  C 0 1 N N N 32.708 -34.272 -1.813 -3.544 -1.269 -0.627 C11  H39 11 
H39 C12  C12  C 0 1 N N N 37.112 -32.121 -2.390 2.822  0.149  0.033  C12  H39 12 
H39 C13  C13  C 0 1 N N N 31.091 -35.823 1.776  -5.286 2.758  -0.872 C13  H39 13 
H39 C14  C14  C 0 1 N N N 33.021 -27.696 -1.183 1.914  -4.636 0.303  C14  H39 14 
H39 C15  C15  C 0 1 N N N 34.013 -27.460 -3.440 0.690  -3.348 -1.453 C15  H39 15 
H39 C16  C16  C 0 1 N N N 37.344 -33.328 -3.251 3.918  0.044  -0.995 C16  H39 16 
H39 C17  C17  C 0 1 N N N 33.225 -31.297 -1.331 -1.626 -1.336 1.538  C17  H39 17 
H39 C18  C18  C 0 1 N N N 34.666 -29.399 -2.059 0.182  -2.961 0.962  C18  H39 18 
H39 C19  C19  C 0 1 N N N 35.618 -31.207 -0.671 0.647  -0.507 0.915  C19  H39 19 
H39 C20  C20  C 0 1 N N N 33.523 -28.448 -2.399 1.286  -3.285 -0.045 C20  H39 20 
H39 C21  C21  C 0 1 N N S 34.370 -30.384 -0.940 -0.407 -1.584 0.649  C21  H39 21 
H39 N22  N22  N 0 1 Y N N 38.714 -32.445 -6.521 6.307  2.775  -0.498 N22  H39 22 
H39 N23  N23  N 0 1 N N N 35.901 -32.153 -1.726 1.713  -0.608 -0.085 N23  H39 23 
H39 O24  O24  O 0 1 N N N 31.761 -34.976 -2.266 -2.899 -1.584 -1.768 O24  H39 24 
H39 O25  O25  O 0 1 N N N 33.837 -34.120 -2.361 -4.399 -2.012 -0.188 O25  H39 25 
H39 O26  O26  O 0 1 N N N 37.944 -31.230 -2.313 2.937  0.914  0.967  O26  H39 26 
H39 O27  O27  O 0 1 N N N 31.379 -34.749 2.683  -4.219 3.381  -0.132 O27  H39 27 
H39 O28  O28  O 0 1 N N N 31.754 -35.693 0.509  -4.745 1.474  -1.235 O28  H39 28 
H39 H1   H1   H 0 1 N N N 32.714 -30.678 1.181  -1.260 1.108  2.609  H1   H39 29 
H39 H2   H2   H 0 1 N N N 31.909 -32.089 3.027  -2.328 3.227  1.964  H2   H39 30 
H39 H3   H3   H 0 1 N N N 35.616 -32.543 -5.508 6.359  -0.256 0.653  H3   H39 31 
H39 H4   H4   H 0 1 N N N 36.953 -31.972 -7.724 7.837  1.904  0.786  H4   H39 32 
H39 H5   H5   H 0 1 N N N 39.820 -33.050 -4.740 4.463  2.807  -1.660 H5   H39 33 
H39 H13  H13  H 0 1 N N N 30.005 -35.849 1.600  -6.169 2.640  -0.244 H13  H39 34 
H39 H13A H13A H 0 0 N N N 31.410 -36.767 2.241  -5.526 3.340  -1.762 H13A H39 35 
H39 H14  H14  H 0 1 N N N 32.666 -28.413 -0.428 2.640  -4.908 -0.463 H14  H39 36 
H39 H14A H14A H 0 0 N N N 33.839 -27.095 -0.760 2.415  -4.566 1.269  H14A H39 37 
H39 H14B H14B H 0 0 N N N 32.193 -27.034 -1.477 1.135  -5.397 0.353  H14B H39 38 
H39 H15  H15  H 0 1 N N N 34.377 -28.007 -4.322 1.460  -3.658 -2.160 H15  H39 39 
H39 H15A H15A H 0 0 N N N 33.186 -26.798 -3.735 -0.129 -4.068 -1.469 H15A H39 40 
H39 H15B H15B H 0 0 N N N 34.832 -26.859 -3.018 0.315  -2.364 -1.733 H15B H39 41 
H39 H16  H16  H 0 1 N N N 36.444 -33.960 -3.236 3.523  0.308  -1.976 H16  H39 42 
H39 H16A H16A H 0 0 N N N 38.197 -33.896 -2.853 4.298  -0.977 -1.019 H16A H39 43 
H39 H17  H17  H 0 1 N N N 33.549 -31.894 -2.196 -1.310 -1.275 2.580  H17  H39 44 
H39 H17A H17A H 0 0 N N N 32.372 -30.665 -1.620 -2.335 -2.156 1.421  H17A H39 45 
H39 H18  H18  H 0 1 N N N 34.912 -29.974 -2.964 -0.603 -3.715 0.896  H18  H39 46 
H39 H18A H18A H 0 0 N N N 35.535 -28.795 -1.761 0.598  -2.957 1.969  H18A H39 47 
H39 H19  H19  H 0 1 N N N 35.479 -31.760 0.270  0.183  0.478  0.853  H19  H39 48 
H39 H19A H19A H 0 0 N N N 36.475 -30.524 -0.571 1.067  -0.649 1.911  H19A H39 49 
H39 H20  H20  H 0 1 N N N 32.693 -29.031 -2.825 2.050  -2.509 -0.009 H20  H39 50 
H39 H21  H21  H 0 1 N N N 34.098 -29.829 -0.030 -0.707 -1.547 -0.398 H21  H39 51 
H39 HN23 HN23 H 0 0 N N N 35.215 -32.836 -1.977 1.620  -1.220 -0.832 HN23 H39 52 
H39 HO24 HO24 H 0 0 N N N 32.027 -35.376 -3.085 -3.203 -2.371 -2.241 HO24 H39 53 
H39 HN22 HN22 H 0 0 N N N 39.454 -32.298 -7.177 6.639  3.678  -0.624 HN22 H39 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H39 C7  C1   DOUB Y N 1  
H39 C1  C2   SING Y N 2  
H39 C1  H1   SING N N 3  
H39 C9  C2   DOUB Y N 4  
H39 C2  H2   SING N N 5  
H39 C4  C3   DOUB Y N 6  
H39 C3  C8   SING Y N 7  
H39 C3  H3   SING N N 8  
H39 C4  N22  SING Y N 9  
H39 C4  H4   SING N N 10 
H39 N22 C5   SING Y N 11 
H39 C5  C8   DOUB Y N 12 
H39 C5  H5   SING N N 13 
H39 C11 C6   SING N N 14 
H39 C6  C7   SING Y N 15 
H39 C6  C10  DOUB Y N 16 
H39 C17 C7   SING N N 17 
H39 C8  C16  SING N N 18 
H39 C10 C9   SING Y N 19 
H39 C9  O27  SING N N 20 
H39 O28 C10  SING N N 21 
H39 O25 C11  DOUB N N 22 
H39 O24 C11  SING N N 23 
H39 C16 C12  SING N N 24 
H39 C12 O26  DOUB N N 25 
H39 C12 N23  SING N N 26 
H39 O28 C13  SING N N 27 
H39 C13 O27  SING N N 28 
H39 C13 H13  SING N N 29 
H39 C13 H13A SING N N 30 
H39 C20 C14  SING N N 31 
H39 C14 H14  SING N N 32 
H39 C14 H14A SING N N 33 
H39 C14 H14B SING N N 34 
H39 C15 C20  SING N N 35 
H39 C15 H15  SING N N 36 
H39 C15 H15A SING N N 37 
H39 C15 H15B SING N N 38 
H39 C16 H16  SING N N 39 
H39 C16 H16A SING N N 40 
H39 C17 C21  SING N N 41 
H39 C17 H17  SING N N 42 
H39 C17 H17A SING N N 43 
H39 C20 C18  SING N N 44 
H39 C18 C21  SING N N 45 
H39 C18 H18  SING N N 46 
H39 C18 H18A SING N N 47 
H39 N23 C19  SING N N 48 
H39 C21 C19  SING N N 49 
H39 C19 H19  SING N N 50 
H39 C19 H19A SING N N 51 
H39 C20 H20  SING N N 52 
H39 C21 H21  SING N N 53 
H39 N23 HN23 SING N N 54 
H39 O24 HO24 SING N N 55 
H39 N22 HN22 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H39 SMILES           ACDLabs              12.01 "O=C(O)c1c(ccc2OCOc12)CC(CC(C)C)CNC(=O)Cc3ccnc3"                                                                                                                             
H39 InChI            InChI                1.03  "InChI=1S/C21H26N2O5/c1-13(2)7-15(11-23-18(24)9-14-5-6-22-10-14)8-16-3-4-17-20(28-12-27-17)19(16)21(25)26/h3-6,10,13,15,22H,7-9,11-12H2,1-2H3,(H,23,24)(H,25,26)/t15-/m0/s1" 
H39 InChIKey         InChI                1.03  NTYRVXHMFKAXSQ-HNNXBMFYSA-N                                                                                                                                                  
H39 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](CNC(=O)Cc1c[nH]cc1)Cc2ccc3OCOc3c2C(O)=O"                                                                                                                        
H39 SMILES           CACTVS               3.385 "CC(C)C[CH](CNC(=O)Cc1c[nH]cc1)Cc2ccc3OCOc3c2C(O)=O"                                                                                                                         
H39 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](Cc1ccc2c(c1C(=O)O)OCO2)CNC(=O)Cc3cc[nH]c3"                                                                                                                     
H39 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)CC(Cc1ccc2c(c1C(=O)O)OCO2)CNC(=O)Cc3cc[nH]c3"                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
H39 "SYSTEMATIC NAME" ACDLabs              12.01 "5-[(2S)-4-methyl-2-{[(1H-pyrrol-3-ylacetyl)amino]methyl}pentyl]-1,3-benzodioxole-4-carboxylic acid"     
H39 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[(2S)-4-methyl-2-[[2-(1H-pyrrol-3-yl)ethanoylamino]methyl]pentyl]-1,3-benzodioxole-4-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H39 "Create component" 2013-12-23 EBI  
H39 "Initial release"  2014-01-08 RCSB 
# 
