data_GY9
#

_chem_comp.id                                   GY9
_chem_comp.name                                 "2-{(2S)-1-[(2-chlorophenoxy)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H25 Cl N4 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        SRI-29835
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-22
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       512.942
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GY9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5W73
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GY9  C1   C1   C   0  1  N  N  N  128.255  102.979  287.309   0.665   3.154   0.327  C1   GY9   1  
GY9  C10  C2   C   0  1  N  N  N  127.716  101.293  284.624   3.113   1.321   0.107  C10  GY9   2  
GY9  C11  C3   C   0  1  N  N  N  127.161  102.660  284.307   4.007   0.293  -0.536  C11  GY9   3  
GY9  C12  C4   C   0  1  N  N  N  132.934  103.059  284.523  -2.666  -1.928   0.499  C12  GY9   4  
GY9  C13  C5   C   0  1  N  N  N  132.463  103.130  283.093  -4.176  -2.169   0.560  C13  GY9   5  
GY9  C14  C6   C   0  1  Y  N  N  123.880  106.140  286.198   6.121  -4.123  -1.207  C14  GY9   6  
GY9  C15  C7   C   0  1  Y  N  N  125.127  106.257  285.657   5.419  -4.239  -0.022  C15  GY9   7  
GY9  C16  C8   C   0  1  Y  N  N  125.780  105.151  285.129   4.723  -3.154   0.478  C16  GY9   8  
GY9  C17  C9   C   0  1  Y  N  N  125.166  103.884  285.135   4.732  -1.948  -0.210  C17  GY9   9  
GY9  C18  C10  C   0  1  Y  N  N  123.895  103.803  285.697   5.438  -1.836  -1.399  C18  GY9  10  
GY9  C19  C11  C   0  1  Y  N  N  123.261  104.917  286.221   6.130  -2.923  -1.895  C19  GY9  11  
GY9  C2   C12  C   0  1  N  N  N  130.212  104.134  286.905  -0.857   1.415   0.491  C2   GY9  12  
GY9  C20  C13  C   0  1  Y  N  N  129.254  102.108  279.428  -8.901  -1.838  -0.845  C20  GY9  13  
GY9  C21  C14  C   0  1  Y  N  N  129.208  101.024  280.272  -8.169  -1.442  -1.950  C21  GY9  14  
GY9  C22  C15  C   0  1  Y  N  N  129.972  100.995  281.427  -6.790  -1.393  -1.885  C22  GY9  15  
GY9  C23  C16  C   0  1  Y  N  N  130.792  102.071  281.729  -6.140  -1.741  -0.710  C23  GY9  16  
GY9  C24  C17  C   0  1  Y  N  N  130.837  103.169  280.883  -6.877  -2.137   0.397  C24  GY9  17  
GY9  C25  C18  C   0  1  Y  N  N  130.066  103.174  279.732  -8.255  -2.184   0.327  C25  GY9  18  
GY9  C3   C19  C   0  1  N  N  N  129.822  105.168  287.703  -1.854   2.290   0.891  C3   GY9  19  
GY9  C4   C20  C   0  1  N  N  N  128.587  105.115  288.348  -1.511   3.714   0.998  C4   GY9  20  
GY9  C5   C21  C   0  1  N  N  N  131.540  104.162  286.198  -1.141  -0.032   0.365  C5   GY9  21  
GY9  C6   C22  C   0  1  N  N  N  128.778   99.945  287.822   3.276   4.366  -1.941  C6   GY9  22  
GY9  C7   C23  C   0  1  N  N  N  127.502  100.688  288.184   2.042   4.704  -1.064  C7   GY9  23  
GY9  C8   C24  C   0  1  N  N  S  127.418  101.740  287.065   2.070   3.599   0.014  C8   GY9  24  
GY9  C9   C25  C   0  1  N  N  N  128.592   99.729  286.339   3.269   2.817  -1.903  C9   GY9  25  
GY9  N1   N1   N   0  1  N  N  N  129.442  103.054  286.708   0.373   1.891   0.223  N1   GY9  26  
GY9  N2   N2   N   0  1  N  N  N  127.821  103.993  288.118  -0.243   4.083   0.711  N2   GY9  27  
GY9  N3   N3   N   0  1  N  N  N  131.789  103.108  285.417  -2.401  -0.487   0.513  N3   GY9  28  
GY9  N4   N4   N   0  1  N  N  N  127.893  100.950  285.912   2.841   2.474  -0.535  N4   GY9  29  
GY9  O1   O1   O   0  1  N  N  N  130.566  106.261  287.924  -3.104   1.847   1.174  O1   GY9  30  
GY9  O2   O2   O   0  1  N  N  N  128.157  106.006  289.095  -2.341   4.537   1.345  O2   GY9  31  
GY9  O3   O3   O   0  1  N  N  N  132.319  105.106  286.321  -0.238  -0.810   0.127  O3   GY9  32  
GY9  O4   O4   O   0  1  N  N  N  125.777  102.766  284.620   4.049  -0.880   0.279  O4   GY9  33  
GY9  O5   O5   O   0  1  N  N  N  128.024  100.514  283.728   2.637   1.110   1.203  O5   GY9  34  
GY9  O6   O6   O   0  1  N  N  N  131.547  102.054  282.871  -4.783  -1.693  -0.643  O6   GY9  35  
GY9  CL1  CL1  CL  0  0  N  N  N  127.358  105.450  284.466   3.841  -3.299   1.966  CL1  GY9  36  
GY9  H1   H1   H   0  1  N  N  N  127.297  102.857  283.233   3.617   0.037  -1.521  H1   GY9  37  
GY9  H2   H2   H   0  1  N  N  N  127.714  103.411  284.891   5.013   0.700  -0.638  H2   GY9  38  
GY9  H3   H3   H   0  1  N  N  N  133.482  102.119  284.682  -2.189  -2.393   1.361  H3   GY9  39  
GY9  H4   H4   H   0  1  N  N  N  133.598  103.910  284.732  -2.266  -2.362  -0.417  H4   GY9  40  
GY9  H5   H5   H   0  1  N  N  N  133.322  103.034  282.413  -4.369  -3.236   0.667  H5   GY9  41  
GY9  H6   H6   H   0  1  N  N  N  131.959  104.091  282.914  -4.595  -1.636   1.414  H6   GY9  42  
GY9  H7   H7   H   0  1  N  N  N  123.383  107.007  286.606   6.667  -4.971  -1.595  H7   GY9  43  
GY9  H8   H8   H   0  1  N  N  N  125.612  107.222  285.639   5.413  -5.177   0.513  H8   GY9  44  
GY9  H9   H9   H   0  1  N  N  N  123.391  102.848  285.725   5.445  -0.900  -1.936  H9   GY9  45  
GY9  H10  H10  H   0  1  N  N  N  122.274  104.822  286.650   6.684  -2.835  -2.818  H10  GY9  46  
GY9  H11  H11  H   0  1  N  N  N  128.654  102.122  278.530  -9.979  -1.871  -0.897  H11  GY9  47  
GY9  H12  H12  H   0  1  N  N  N  128.570  100.186  280.032  -8.676  -1.172  -2.864  H12  GY9  48  
GY9  H13  H13  H   0  1  N  N  N  129.929  100.141  282.087  -6.219  -1.085  -2.748  H13  GY9  49  
GY9  H14  H14  H   0  1  N  N  N  131.468  104.013  281.119  -6.372  -2.408   1.313  H14  GY9  50  
GY9  H15  H15  H   0  1  N  N  N  130.104  104.024  279.067  -8.829  -2.492   1.188  H15  GY9  51  
GY9  H16  H16  H   0  1  N  N  N  128.853   98.989  288.361   3.145   4.733  -2.958  H16  GY9  52  
GY9  H17  H17  H   0  1  N  N  N  129.670  100.554  288.030   4.190   4.763  -1.499  H17  GY9  53  
GY9  H18  H18  H   0  1  N  N  N  127.582  101.162  289.173   2.151   5.689  -0.609  H18  GY9  54  
GY9  H19  H19  H   0  1  N  N  N  126.630  100.017  288.168   1.125   4.651  -1.651  H19  GY9  55  
GY9  H20  H20  H   0  1  N  N  N  126.367  102.029  286.917   2.550   3.975   0.918  H20  GY9  56  
GY9  H21  H21  H   0  1  N  N  N  127.982   98.835  286.143   2.560   2.424  -2.632  H21  GY9  57  
GY9  H22  H22  H   0  1  N  N  N  129.562   99.630  285.829   4.268   2.428  -2.099  H22  GY9  58  
GY9  H23  H23  H   0  1  N  N  N  126.924  103.918  288.554   0.018   5.015   0.779  H23  GY9  59  
GY9  H24  H24  H   0  1  N  N  N  131.167  102.326  285.448  -3.133   0.140   0.628  H24  GY9  60  
GY9  H25  H25  H   0  1  N  N  N  131.383  106.191  287.444  -3.717   2.545   1.443  H25  GY9  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GY9  C20  C25  DOUB  Y  N   1  
GY9  C20  C21  SING  Y  N   2  
GY9  C25  C24  SING  Y  N   3  
GY9  C21  C22  DOUB  Y  N   4  
GY9  C24  C23  DOUB  Y  N   5  
GY9  C22  C23  SING  Y  N   6  
GY9  C23  O6   SING  N  N   7  
GY9  O6   C13  SING  N  N   8  
GY9  C13  C12  SING  N  N   9  
GY9  O5   C10  DOUB  N  N  10  
GY9  C11  O4   SING  N  N  11  
GY9  C11  C10  SING  N  N  12  
GY9  CL1  C16  SING  N  N  13  
GY9  C12  N3   SING  N  N  14  
GY9  O4   C17  SING  N  N  15  
GY9  C10  N4   SING  N  N  16  
GY9  C16  C17  DOUB  Y  N  17  
GY9  C16  C15  SING  Y  N  18  
GY9  C17  C18  SING  Y  N  19  
GY9  N3   C5   SING  N  N  20  
GY9  C15  C14  DOUB  Y  N  21  
GY9  C18  C19  DOUB  Y  N  22  
GY9  N4   C9   SING  N  N  23  
GY9  N4   C8   SING  N  N  24  
GY9  C14  C19  SING  Y  N  25  
GY9  C5   O3   DOUB  N  N  26  
GY9  C5   C2   SING  N  N  27  
GY9  C9   C6   SING  N  N  28  
GY9  N1   C2   SING  N  N  29  
GY9  N1   C1   DOUB  N  N  30  
GY9  C2   C3   DOUB  N  N  31  
GY9  C8   C1   SING  N  N  32  
GY9  C8   C7   SING  N  N  33  
GY9  C1   N2   SING  N  N  34  
GY9  C3   O1   SING  N  N  35  
GY9  C3   C4   SING  N  N  36  
GY9  C6   C7   SING  N  N  37  
GY9  N2   C4   SING  N  N  38  
GY9  C4   O2   DOUB  N  N  39  
GY9  C11  H1   SING  N  N  40  
GY9  C11  H2   SING  N  N  41  
GY9  C12  H3   SING  N  N  42  
GY9  C12  H4   SING  N  N  43  
GY9  C13  H5   SING  N  N  44  
GY9  C13  H6   SING  N  N  45  
GY9  C14  H7   SING  N  N  46  
GY9  C15  H8   SING  N  N  47  
GY9  C18  H9   SING  N  N  48  
GY9  C19  H10  SING  N  N  49  
GY9  C20  H11  SING  N  N  50  
GY9  C21  H12  SING  N  N  51  
GY9  C22  H13  SING  N  N  52  
GY9  C24  H14  SING  N  N  53  
GY9  C25  H15  SING  N  N  54  
GY9  C6   H16  SING  N  N  55  
GY9  C6   H17  SING  N  N  56  
GY9  C7   H18  SING  N  N  57  
GY9  C7   H19  SING  N  N  58  
GY9  C8   H20  SING  N  N  59  
GY9  C9   H21  SING  N  N  60  
GY9  C9   H22  SING  N  N  61  
GY9  N2   H23  SING  N  N  62  
GY9  N3   H24  SING  N  N  63  
GY9  O1   H25  SING  N  N  64  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GY9  SMILES            ACDLabs               12.01  "C=2(NC(C(=C(C(=O)NCCOc1ccccc1)N=2)O)=O)C4CCCN4C(COc3c(cccc3)Cl)=O"  
GY9  InChI             InChI                 1.03   "InChI=1S/C25H25ClN4O6/c26-17-9-4-5-11-19(17)36-15-20(31)30-13-6-10-18(30)23-28-21(22(32)25(34)29-23)24(33)27-12-14-35-16-7-2-1-3-8-16/h1-5,7-9,11,18,32H,6,10,12-15H2,(H,27,33)(H,28,29,34)/t18-/m0/s1"  
GY9  InChIKey          InChI                 1.03   FJNCSYKYMWITQI-SFHVURJKSA-N  
GY9  SMILES_CANONICAL  CACTVS                3.385  "OC1=C(N=C(NC1=O)[C@@H]2CCCN2C(=O)COc3ccccc3Cl)C(=O)NCCOc4ccccc4"  
GY9  SMILES            CACTVS                3.385  "OC1=C(N=C(NC1=O)[CH]2CCCN2C(=O)COc3ccccc3Cl)C(=O)NCCOc4ccccc4"  
GY9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)OCCNC(=O)C2=C(C(=O)NC(=N2)[C@@H]3CCCN3C(=O)COc4ccccc4Cl)O"  
GY9  SMILES            "OpenEye OEToolkits"  2.0.6  "c1ccc(cc1)OCCNC(=O)C2=C(C(=O)NC(=N2)C3CCCN3C(=O)COc4ccccc4Cl)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GY9  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-{(2S)-1-[(2-chlorophenoxy)acetyl]pyrrolidin-2-yl}-5-hydroxy-6-oxo-N-(2-phenoxyethyl)-1,6-dihydropyrimidine-4-carboxamide"  
GY9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-[(2~{S})-1-[2-(2-chloranylphenoxy)ethanoyl]pyrrolidin-2-yl]-5-oxidanyl-6-oxidanylidene-~{N}-(2-phenoxyethyl)-1~{H}-pyrimidine-4-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GY9  "Create component"  2017-06-22  RCSB  
GY9  "Initial release"   2018-01-17  RCSB  
GY9  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GY9
_pdbx_chem_comp_synonyms.name        SRI-29835
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
