data_DU9
#

_chem_comp.id                                   DU9
_chem_comp.name                                 "6-[(2S,6R)-2,6-dimethylmorpholin-4-yl]-4-fluoranyl-1-methyl-1'-(8-methyl-4-oxidanylidene-3,5,6,7-tetrahydropyrido[2,3-d]pyrimidin-2-yl)spiro[indole-3,4'-piperidine]-2-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H35 F N6 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-08-28
_chem_comp.pdbx_modified_date                   2020-03-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       510.604
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DU9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6KRO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DU9  C10  C1   C  0  1  N  N  N   1.938  -11.474   -7.224   0.139  -0.929   0.169  C10  DU9   1  
DU9  C11  C2   C  0  1  Y  N  N   1.702  -12.043   -5.867   1.518  -0.319   0.185  C11  DU9   2  
DU9  C12  C3   C  0  1  Y  N  N   1.384  -13.326   -5.463   1.984   0.959  -0.039  C12  DU9   3  
DU9  C14  C4   C  0  1  Y  N  N   1.208  -13.739   -4.134   3.340   1.227   0.046  C14  DU9   4  
DU9  C15  C5   C  0  1  Y  N  N   1.351  -12.754   -3.133   4.226   0.204   0.358  C15  DU9   5  
DU9  C01  C6   C  0  1  N  N  N   3.279  -12.454  -15.760  -7.735   1.172  -1.117  C01  DU9   6  
DU9  C02  C7   C  0  1  N  N  N   2.983  -12.255  -14.307  -6.372   0.600  -0.842  C02  DU9   7  
DU9  C03  C8   C  0  1  N  N  N   1.595  -12.161  -13.862  -5.664  -0.021  -1.879  C03  DU9   8  
DU9  C06  C9   C  0  1  N  N  N   2.470  -11.836  -11.586  -3.911  -0.428  -0.371  C06  DU9   9  
DU9  C08  C10  C  0  1  N  N  N   0.877  -11.451   -9.609  -1.855  -1.489  -1.225  C08  DU9  10  
DU9  C09  C11  C  0  1  N  N  N   0.695  -11.645   -8.100  -0.487  -0.797  -1.217  C09  DU9  11  
DU9  C17  C12  C  0  1  N  N  N   1.036  -11.869   -0.702   6.358  -0.398  -0.465  C17  DU9  12  
DU9  C18  C13  C  0  1  N  N  R   1.821  -12.203    0.629   7.853  -0.115  -0.295  C18  DU9  13  
DU9  C19  C14  C  0  1  N  N  N   1.748  -11.061    1.662   8.649  -0.957  -1.295  C19  DU9  14  
DU9  C21  C15  C  0  1  N  N  S   1.510  -14.536    0.232   7.374   2.146   0.333  C21  DU9  15  
DU9  C22  C16  C  0  1  N  N  N   1.175  -15.908    0.852   7.683   3.600  -0.029  C22  DU9  16  
DU9  C23  C17  C  0  1  N  N  N   0.670  -14.245   -1.071   5.874   1.887   0.170  C23  DU9  17  
DU9  C24  C18  C  0  1  Y  N  N   1.684  -11.419   -3.519   3.757  -1.081   0.584  C24  DU9  18  
DU9  C25  C19  C  0  1  Y  N  N   1.848  -11.043   -4.868   2.394  -1.353   0.498  C25  DU9  19  
DU9  C27  C20  C  0  1  N  N  N   2.416   -8.433   -4.876   2.320  -3.823   1.018  C27  DU9  20  
DU9  C28  C21  C  0  1  N  N  N   2.199   -9.983   -6.914   0.366  -2.384   0.504  C28  DU9  21  
DU9  C30  C22  C  0  1  N  N  N   3.134  -12.106   -7.895  -0.748  -0.274   1.224  C30  DU9  22  
DU9  C31  C23  C  0  1  N  N  N   3.435  -11.521   -9.270  -2.117  -0.962   1.235  C31  DU9  23  
DU9  C33  C24  C  0  1  N  N  N   4.010  -12.126  -13.379  -5.791   0.670   0.411  C33  DU9  24  
DU9  C35  C25  C  0  1  N  N  N   6.503  -12.091  -12.645  -5.983   1.071   2.842  C35  DU9  25  
DU9  C36  C26  C  0  1  N  N  N   5.744  -12.447  -15.197  -7.637   2.090   1.195  C36  DU9  26  
DU9  C37  C27  C  0  1  N  N  N   4.672  -11.826  -16.100  -8.516   1.338   0.187  C37  DU9  27  
DU9  F13  F1   F  0  1  N  N  N   1.222  -14.307   -6.424   1.118   1.951  -0.342  F13  DU9  28  
DU9  N05  N1   N  0  1  N  N  N   1.368  -11.936  -12.443  -4.441  -0.527  -1.620  N05  DU9  29  
DU9  N07  N2   N  0  1  N  N  N   2.260  -11.636  -10.213  -2.666  -0.944  -0.127  N07  DU9  30  
DU9  N16  N3   N  0  1  N  N  N   1.209  -12.997   -1.679   5.595   0.470   0.444  N16  DU9  31  
DU9  N26  N4   N  0  1  N  N  N   2.164   -9.775   -5.502   1.690  -2.545   0.679  N26  DU9  32  
DU9  N32  N5   N  0  1  N  N  N   3.715  -11.914  -12.009  -4.570   0.153   0.608  N32  DU9  33  
DU9  N34  N6   N  0  1  N  N  N   5.400  -12.207  -13.736  -6.454   1.264   1.468  N34  DU9  34  
DU9  O04  O1   O  0  1  N  N  N   0.583  -12.255  -14.578  -6.146  -0.104  -2.997  O04  DU9  35  
DU9  O20  O2   O  0  1  N  N  N   1.363  -13.444    1.129   8.101   1.273  -0.535  O20  DU9  36  
DU9  O29  O3   O  0  1  N  N  N   2.465   -9.108   -7.743  -0.484  -3.244   0.599  O29  DU9  37  
DU9  H1   H1   H  0  1  N  N  N   0.974  -14.764   -3.888   3.708   2.227  -0.130  H1   DU9  38  
DU9  H2   H2   H  0  1  N  N  N   2.500  -11.965  -16.363  -7.629   2.143  -1.600  H2   DU9  39  
DU9  H3   H3   H  0  1  N  N  N   3.297  -13.530  -15.986  -8.282   0.499  -1.778  H3   DU9  40  
DU9  H4   H4   H  0  1  N  N  N   0.557  -10.425   -9.843  -2.353  -1.302  -2.176  H4   DU9  41  
DU9  H5   H5   H  0  1  N  N  N   0.208  -12.167  -10.109  -1.722  -2.562  -1.086  H5   DU9  42  
DU9  H6   H6   H  0  1  N  N  N  -0.054  -10.915   -7.759  -0.612   0.258  -1.460  H6   DU9  43  
DU9  H7   H7   H  0  1  N  N  N   0.314  -12.664   -7.940   0.163  -1.266  -1.955  H7   DU9  44  
DU9  H8   H8   H  0  1  N  N  N   1.433  -10.941   -1.139   6.064  -0.194  -1.494  H8   DU9  45  
DU9  H9   H9   H  0  1  N  N  N  -0.033  -11.740   -0.475   6.156  -1.442  -0.228  H9   DU9  46  
DU9  H10  H10  H  0  1  N  N  N   2.879  -12.311    0.347   8.159  -0.369   0.720  H10  DU9  47  
DU9  H11  H11  H  0  1  N  N  N   2.309  -11.346    2.564   8.344  -0.700  -2.309  H11  DU9  48  
DU9  H12  H12  H  0  1  N  N  N   2.186  -10.149    1.231   9.713  -0.755  -1.174  H12  DU9  49  
DU9  H13  H13  H  0  1  N  N  N   0.697  -10.873    1.927   8.456  -2.014  -1.114  H13  DU9  50  
DU9  H14  H14  H  0  1  N  N  N   2.563  -14.581   -0.083   7.666   1.958   1.366  H14  DU9  51  
DU9  H15  H15  H  0  1  N  N  N   1.785  -16.062    1.754   7.390   3.788  -1.061  H15  DU9  52  
DU9  H16  H16  H  0  1  N  N  N   0.109  -15.938    1.121   7.129   4.265   0.633  H16  DU9  53  
DU9  H17  H17  H  0  1  N  N  N   1.392  -16.703    0.123   8.752   3.783   0.084  H17  DU9  54  
DU9  H18  H18  H  0  1  N  N  N  -0.391  -14.110   -0.812   5.319   2.510   0.871  H18  DU9  55  
DU9  H19  H19  H  0  1  N  N  N   0.771  -15.082   -1.778   5.572   2.127  -0.849  H19  DU9  56  
DU9  H20  H20  H  0  1  N  N  N   1.815  -10.672   -2.750   4.450  -1.873   0.826  H20  DU9  57  
DU9  H21  H21  H  0  1  N  N  N   2.336   -8.517   -3.782   1.555  -4.594   1.102  H21  DU9  58  
DU9  H22  H22  H  0  1  N  N  N   3.425   -8.087   -5.144   3.029  -4.097   0.237  H22  DU9  59  
DU9  H23  H23  H  0  1  N  N  N   1.671   -7.712   -5.243   2.845  -3.727   1.969  H23  DU9  60  
DU9  H24  H24  H  0  1  N  N  N   2.941  -13.183   -8.009  -0.282  -0.376   2.204  H24  DU9  61  
DU9  H25  H25  H  0  1  N  N  N   4.014  -11.957   -7.252  -0.873   0.783   0.989  H25  DU9  62  
DU9  H26  H26  H  0  1  N  N  N   4.290  -12.060   -9.704  -2.006  -1.993   1.571  H26  DU9  63  
DU9  H27  H27  H  0  1  N  N  N   3.692  -10.458   -9.153  -2.788  -0.429   1.909  H27  DU9  64  
DU9  H28  H28  H  0  1  N  N  N   6.034  -11.919  -11.665  -6.466   0.194   3.272  H28  DU9  65  
DU9  H29  H29  H  0  1  N  N  N   7.087  -13.023  -12.613  -4.903   0.926   2.839  H29  DU9  66  
DU9  H30  H30  H  0  1  N  N  N   7.169  -11.249  -12.885  -6.230   1.950   3.437  H30  DU9  67  
DU9  H31  H31  H  0  1  N  N  N   5.796  -13.530  -15.385  -7.329   3.047   0.774  H31  DU9  68  
DU9  H32  H32  H  0  1  N  N  N   6.719  -11.989  -15.421  -8.192   2.256   2.119  H32  DU9  69  
DU9  H33  H33  H  0  1  N  N  N   4.918  -12.027  -17.153  -9.426   1.908  -0.001  H33  DU9  70  
DU9  H34  H34  H  0  1  N  N  N   4.636  -10.739  -15.933  -8.773   0.357   0.587  H34  DU9  71  
DU9  H35  H35  H  0  1  N  N  N   0.438  -11.854  -12.085  -3.938  -0.963  -2.326  H35  DU9  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DU9  C37  C01  SING  N  N   1  
DU9  C37  C36  SING  N  N   2  
DU9  C01  C02  SING  N  N   3  
DU9  C36  N34  SING  N  N   4  
DU9  O04  C03  DOUB  N  N   5  
DU9  C02  C03  SING  N  N   6  
DU9  C02  C33  DOUB  N  N   7  
DU9  C03  N05  SING  N  N   8  
DU9  N34  C33  SING  N  N   9  
DU9  N34  C35  SING  N  N  10  
DU9  C33  N32  SING  N  N  11  
DU9  N05  C06  SING  N  N  12  
DU9  N32  C06  DOUB  N  N  13  
DU9  C06  N07  SING  N  N  14  
DU9  N07  C08  SING  N  N  15  
DU9  N07  C31  SING  N  N  16  
DU9  C08  C09  SING  N  N  17  
DU9  C31  C30  SING  N  N  18  
DU9  C09  C10  SING  N  N  19  
DU9  C30  C10  SING  N  N  20  
DU9  O29  C28  DOUB  N  N  21  
DU9  C10  C28  SING  N  N  22  
DU9  C10  C11  SING  N  N  23  
DU9  C28  N26  SING  N  N  24  
DU9  F13  C12  SING  N  N  25  
DU9  C11  C12  DOUB  Y  N  26  
DU9  C11  C25  SING  Y  N  27  
DU9  N26  C27  SING  N  N  28  
DU9  N26  C25  SING  N  N  29  
DU9  C12  C14  SING  Y  N  30  
DU9  C25  C24  DOUB  Y  N  31  
DU9  C14  C15  DOUB  Y  N  32  
DU9  C24  C15  SING  Y  N  33  
DU9  C15  N16  SING  N  N  34  
DU9  N16  C23  SING  N  N  35  
DU9  N16  C17  SING  N  N  36  
DU9  C23  C21  SING  N  N  37  
DU9  C17  C18  SING  N  N  38  
DU9  C21  C22  SING  N  N  39  
DU9  C21  O20  SING  N  N  40  
DU9  C18  O20  SING  N  N  41  
DU9  C18  C19  SING  N  N  42  
DU9  C14  H1   SING  N  N  43  
DU9  C01  H2   SING  N  N  44  
DU9  C01  H3   SING  N  N  45  
DU9  C08  H4   SING  N  N  46  
DU9  C08  H5   SING  N  N  47  
DU9  C09  H6   SING  N  N  48  
DU9  C09  H7   SING  N  N  49  
DU9  C17  H8   SING  N  N  50  
DU9  C17  H9   SING  N  N  51  
DU9  C18  H10  SING  N  N  52  
DU9  C19  H11  SING  N  N  53  
DU9  C19  H12  SING  N  N  54  
DU9  C19  H13  SING  N  N  55  
DU9  C21  H14  SING  N  N  56  
DU9  C22  H15  SING  N  N  57  
DU9  C22  H16  SING  N  N  58  
DU9  C22  H17  SING  N  N  59  
DU9  C23  H18  SING  N  N  60  
DU9  C23  H19  SING  N  N  61  
DU9  C24  H20  SING  N  N  62  
DU9  C27  H21  SING  N  N  63  
DU9  C27  H22  SING  N  N  64  
DU9  C27  H23  SING  N  N  65  
DU9  C30  H24  SING  N  N  66  
DU9  C30  H25  SING  N  N  67  
DU9  C31  H26  SING  N  N  68  
DU9  C31  H27  SING  N  N  69  
DU9  C35  H28  SING  N  N  70  
DU9  C35  H29  SING  N  N  71  
DU9  C35  H30  SING  N  N  72  
DU9  C36  H31  SING  N  N  73  
DU9  C36  H32  SING  N  N  74  
DU9  C37  H33  SING  N  N  75  
DU9  C37  H34  SING  N  N  76  
DU9  N05  H35  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DU9  InChI             InChI                 1.03   "InChI=1S/C27H35FN6O3/c1-16-14-34(15-17(2)37-16)18-12-20(28)22-21(13-18)32(4)25(36)27(22)7-10-33(11-8-27)26-29-23-19(24(35)30-26)6-5-9-31(23)3/h12-13,16-17H,5-11,14-15H2,1-4H3,(H,29,30,35)/t16-,17+"  
DU9  InChIKey          InChI                 1.03   KZUPFZKALLNBBV-CALCHBBNSA-N  
DU9  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1CN(C[C@H](C)O1)c2cc(F)c3c(c2)N(C)C(=O)C34CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5"  
DU9  SMILES            CACTVS                3.385  "C[CH]1CN(C[CH](C)O1)c2cc(F)c3c(c2)N(C)C(=O)C34CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5"  
DU9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H]1CN(C[C@@H](O1)C)c2cc3c(c(c2)F)C4(CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5)C(=O)N3C"  
DU9  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1CN(CC(O1)C)c2cc3c(c(c2)F)C4(CCN(CC4)C5=NC6=C(CCCN6C)C(=O)N5)C(=O)N3C"  
#
_pdbx_chem_comp_identifier.comp_id          DU9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "6-[(2~{S},6~{R})-2,6-dimethylmorpholin-4-yl]-4-fluoranyl-1-methyl-1'-(8-methyl-4-oxidanylidene-3,5,6,7-tetrahydropyrido[2,3-d]pyrimidin-2-yl)spiro[indole-3,4'-piperidine]-2-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DU9  "Create component"  2019-08-28  PDBJ  
DU9  "Initial release"   2020-04-01  RCSB  
##
