data_DG9
# 
_chem_comp.id                                    DG9 
_chem_comp.name                                  "5'-({[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-{[oxido(oxo)phosphonio]oxy}butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentyl]sulfonyl}amino)-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H48 N9 O12 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        785.827 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DG9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4DG9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DG9 C     C     C 0 1 N N R N N N -1.958  -35.577 -2.977  -1.975  -0.221 1.678  C     DG9 1  
DG9 N     N     N 0 1 N N N N N N -1.008  -32.723 -1.170  -5.008  1.340  -0.588 N     DG9 2  
DG9 S     S     S 0 1 N N N N N N -0.077  -33.729 -1.983  -3.420  1.234  -0.133 S     DG9 3  
DG9 C1    C1    C 0 1 N N N N N N -0.802  -35.223 -2.027  -3.405  -0.029 1.169  C1    DG9 4  
DG9 N1    N1    N 0 1 Y N N N N N -8.728  -30.949 2.282   -13.775 -1.349 -1.771 N1    DG9 5  
DG9 O1    O1    O 0 1 N N N N N N -0.950  -32.021 3.300   -8.652  4.134  0.163  O1    DG9 6  
DG9 C2    C2    C 0 1 Y N N N N N -7.874  -29.940 2.527   -13.528 -0.055 -1.858 C2    DG9 7  
DG9 N2    N2    N 0 1 N N N N N N -2.493  -37.683 -1.826  -2.527  -2.537 2.252  N2    DG9 8  
DG9 O2    O2    O 0 1 N N N N N N -2.142  -29.598 2.848   -10.759 2.641  0.481  O2    DG9 9  
DG9 C3    C3    C 0 1 N N N N N N -1.234  -33.029 0.229   -6.011  1.826  0.363  C3    DG9 10 
DG9 N3    N3    N 0 1 Y N N N N N -6.575  -30.003 2.203   -12.344 0.458  -1.599 N3    DG9 11 
DG9 O3    O3    O 0 1 N N N N N N -3.804  -27.392 -14.058 15.370  2.573  -0.800 O3    DG9 12 
DG9 C4    C4    C 0 1 Y N N N N N -6.077  -31.109 1.593   -11.333 -0.323 -1.233 C4    DG9 13 
DG9 C5    C5    C 0 1 Y N N N N N -6.929  -32.167 1.325   -11.544 -1.708 -1.125 C5    DG9 14 
DG9 C6    C6    C 0 1 Y N N N N N -8.279  -32.070 1.681   -12.826 -2.208 -1.412 C6    DG9 15 
DG9 N6    N6    N 0 1 N N N N N N -9.153  -33.079 1.440   -13.094 -3.562 -1.322 N6    DG9 16 
DG9 N7    N7    N 0 1 Y N N N N N -6.177  -33.123 0.737   -10.369 -2.262 -0.742 N7    DG9 17 
DG9 C8    C8    C 0 1 Y N N N N N -4.902  -32.677 0.641   -9.472  -1.329 -0.611 C8    DG9 18 
DG9 N9    N9    N 0 1 Y N N N N N -4.848  -31.446 1.158   -10.017 -0.114 -0.903 N9    DG9 19 
DG9 CA    CA    C 0 1 N N R N N N -2.992  -36.298 -2.094  -1.963  -1.286 2.776  CA    DG9 20 
DG9 CB    CB    C 0 1 N N N N N N -4.444  -36.364 -2.571  -2.803  -0.805 3.961  CB    DG9 21 
DG9 "C1'" "C1'" C 0 1 N N R N N N -3.627  -30.605 1.248   -9.326  1.177  -0.871 "C1'" DG9 22 
DG9 S1P   S1P   S 0 1 N N N N N N -2.615  -34.255 -3.961  -0.913  -0.754 0.308  S1P   DG9 23 
DG9 "C2'" "C2'" C 0 1 N N R N N N -2.951  -30.766 2.605   -9.549  1.882  0.492  "C2'" DG9 24 
DG9 P2A   P2A   P 0 1 N N N N N N -4.163  -27.721 -15.487 14.881  1.172  -0.176 P2A   DG9 25 
DG9 C2P   C2P   C 0 1 N N N N N N -3.159  -35.067 -5.437  0.753   -0.643 1.017  C2P   DG9 26 
DG9 O2P   O2P   O 0 1 N N N N N N 0.277   -33.189 -3.259  -2.753  0.759  -1.295 O2P   DG9 27 
DG9 "C3'" "C3'" C 0 1 N N S N N N -2.072  -31.984 2.404   -8.314  2.811  0.582  "C3'" DG9 28 
DG9 C3P   C3P   C 0 1 N N N N N N -2.139  -35.057 -6.574  1.790   -0.942 -0.068 C3P   DG9 29 
DG9 O3P   O3P   O 0 1 N N N N N N 1.100   -33.919 -1.190  -3.124  2.513  0.410  O3P   DG9 30 
DG9 "C4'" "C4'" C 0 1 N N R N N N -1.622  -31.764 0.968   -7.296  2.181  -0.389 "C4'" DG9 31 
DG9 "O4'" "O4'" O 0 1 N N N N N N -2.692  -31.088 0.287   -7.896  0.989  -0.923 "O4'" DG9 32 
DG9 O4A   O4A   O 0 1 N N N N N N -3.132  -27.712 -16.582 14.913  1.253  1.302  O4A   DG9 33 
DG9 N4P   N4P   N 0 1 N N N N N N -2.369  -33.940 -7.468  3.136   -0.853 0.504  N4P   DG9 34 
DG9 C5P   C5P   C 0 1 N N N N N N -2.736  -34.074 -8.739  4.214   -1.079 -0.271 C5P   DG9 35 
DG9 O5P   O5P   O 0 1 N N N N N N -2.976  -35.144 -9.273  4.071   -1.356 -1.444 O5P   DG9 36 
DG9 O6A   O6A   O 0 1 N N N N N N -4.969  -29.119 -15.588 13.378  0.862  -0.664 O6A   DG9 37 
DG9 C6P   C6P   C 0 1 N N N N N N -2.851  -32.793 -9.526  5.598   -0.987 0.317  C6P   DG9 38 
DG9 C7P   C7P   C 0 1 N N N N N N -4.305  -32.595 -9.930  6.635   -1.286 -0.767 C7P   DG9 39 
DG9 N8P   N8P   N 0 1 N N N N N N -4.466  -31.551 -10.921 7.981   -1.197 -0.195 N8P   DG9 40 
DG9 C9P   C9P   C 0 1 N N N N N N -4.347  -31.803 -12.222 9.059   -1.423 -0.971 C9P   DG9 41 
DG9 O9P   O9P   O 0 1 N N N N N N -4.114  -32.916 -12.657 8.923   -1.602 -2.162 O9P   DG9 42 
DG9 CAP   CAP   C 0 1 N N R N N N -4.513  -30.642 -13.165 10.436  -1.453 -0.357 CAP   DG9 43 
DG9 OAP   OAP   O 0 1 N N N N N N -4.581  -29.421 -12.432 10.324  -1.393 1.066  OAP   DG9 44 
DG9 CBP   CBP   C 0 1 N N N N N N -5.761  -30.771 -14.039 11.244  -0.254 -0.857 CBP   DG9 45 
DG9 CCP   CCP   C 0 1 N N N N N N -6.052  -29.428 -14.707 12.624  -0.258 -0.197 CCP   DG9 46 
DG9 CDP   CDP   C 0 1 N N N N N N -5.447  -31.837 -15.075 11.405  -0.346 -2.376 CDP   DG9 47 
DG9 CEP   CEP   C 0 1 N N N N N N -6.980  -31.198 -13.232 10.510  1.040  -0.499 CEP   DG9 48 
DG9 CG1   CG1   C 0 1 N N N N N N -4.727  -37.534 -3.506  -2.774  -1.861 5.069  CG1   DG9 49 
DG9 CG2   CG2   C 0 1 N N N N N N -5.359  -36.457 -1.354  -2.229  0.509  4.494  CG2   DG9 50 
DG9 H     H     H 0 1 N N N N N N -1.576  -36.310 -3.702  -1.603  0.721  2.081  H     DG9 51 
DG9 HN    HN    H 0 1 N N N N N N -0.588  -31.817 -1.218  -5.275  1.081  -1.484 HN    DG9 52 
DG9 H1    H1    H 0 1 N N N N N N -1.182  -35.403 -1.011  -3.777  -0.971 0.766  H1    DG9 53 
DG9 H1A   H1A   H 0 1 N N N N N N 0.001   -35.941 -2.250  -4.044  0.291  1.993  H1A   DG9 54 
DG9 HO1   HO1   H 0 1 N N N N N N -0.435  -32.801 3.131   -9.333  4.557  0.706  HO1   DG9 55 
DG9 H2    H2    H 0 1 N N N N N N -8.249  -29.046 3.002   -14.328 0.608  -2.154 H2    DG9 56 
DG9 HN2   HN2   H 0 1 N N N N N N -3.152  -38.170 -1.252  -2.471  -3.274 2.938  HN2   DG9 57 
DG9 HN2A  HN2A  H 0 0 N N N N N N -2.381  -38.170 -2.692  -3.478  -2.403 1.941  HN2A  DG9 58 
DG9 HO2   HO2   H 0 1 N N N N N N -1.712  -29.680 3.691   -10.942 3.101  1.312  HO2   DG9 59 
DG9 H3    H3    H 0 1 N N N N N N -2.045  -33.768 0.316   -6.223  1.049  1.097  H3    DG9 60 
DG9 H3A   H3A   H 0 1 N N N N N N -0.313  -33.442 0.667   -5.631  2.712  0.871  H3A   DG9 61 
DG9 HN6   HN6   H 0 1 N N N N N N -10.061 -32.819 1.768   -13.982 -3.895 -1.523 HN6   DG9 62 
DG9 HN6A  HN6A  H 0 0 N N N N N N -9.192  -33.258 0.457   -12.392 -4.179 -1.059 HN6A  DG9 63 
DG9 H8    H8    H 0 1 N N N N N N -4.071  -33.223 0.219   -8.446  -1.492 -0.315 H8    DG9 64 
DG9 HA    HA    H 0 1 N N N N N N -3.002  -35.768 -1.130  -0.938  -1.458 3.104  HA    DG9 65 
DG9 HB    HB    H 0 1 N N N N N N -4.674  -35.431 -3.106  -3.832  -0.647 3.637  HB    DG9 66 
DG9 "H1'" "H1'" H 0 1 N N N N N N -3.873  -29.547 1.074   -9.663  1.812  -1.691 "H1'" DG9 67 
DG9 "H2'" "H2'" H 0 1 N N N N N N -3.692  -30.936 3.400   -9.553  1.158  1.307  "H2'" DG9 68 
DG9 H2P   H2P   H 0 1 N N N N N N -3.388  -36.114 -5.189  0.916   0.361  1.408  H2P   DG9 69 
DG9 H2PA  H2PA  H 0 0 N N N N N N -4.072  -34.565 -5.789  0.853   -1.369 1.824  H2PA  DG9 70 
DG9 "H3'" "H3'" H 0 1 N N N N N N -2.673  -32.902 2.476   -7.919  2.822  1.598  "H3'" DG9 71 
DG9 H3P   H3P   H 0 1 N N N N N N -1.128  -34.975 -6.149  1.627   -1.946 -0.460 H3P   DG9 72 
DG9 H3PA  H3PA  H 0 0 N N N N N N -2.224  -35.995 -7.142  1.690   -0.217 -0.876 H3PA  DG9 73 
DG9 "H4'" "H4'" H 0 1 N N N N N N -0.742  -31.104 0.990   -7.073  2.880  -1.195 "H4'" DG9 74 
DG9 HN4P  HN4P  H 0 0 N N N N N N -2.245  -33.015 -7.108  3.250   -0.632 1.442  HN4P  DG9 75 
DG9 H6P   H6P   H 0 1 N N N N N N -2.521  -31.947 -8.905  5.761   0.017  0.709  H6P   DG9 76 
DG9 H6PA  H6PA  H 0 0 N N N N N N -2.222  -32.854 -10.426 5.698   -1.712 1.125  H6PA  DG9 77 
DG9 H7P   H7P   H 0 1 N N N N N N -4.688  -33.539 -10.346 6.472   -2.290 -1.159 H7P   DG9 78 
DG9 H7PA  H7PA  H 0 0 N N N N N N -4.886  -32.326 -9.036  6.535   -0.561 -1.575 H7PA  DG9 79 
DG9 HN8P  HN8P  H 0 0 N N N N N N -4.671  -30.620 -10.621 8.095   -0.975 0.743  HN8P  DG9 80 
DG9 HAP   HAP   H 0 1 N N N N N N -3.638  -30.615 -13.831 10.940  -2.376 -0.643 HAP   DG9 81 
DG9 HOAP  HOAP  H 0 0 N N N N N N -4.686  -28.694 -13.035 9.884   -0.596 1.393  HOAP  DG9 82 
DG9 HCP   HCP   H 0 1 N N N N N N -6.143  -28.644 -13.941 13.146  -1.180 -0.451 HCP   DG9 83 
DG9 HCPA  HCPA  H 0 0 N N N N N N -6.989  -29.493 -15.279 12.509  -0.193 0.886  HCPA  DG9 84 
DG9 HDP   HDP   H 0 1 N N N N N N -6.315  -31.973 -15.736 10.435  -0.208 -2.853 HDP   DG9 85 
DG9 HDPA  HDPA  H 0 0 N N N N N N -4.578  -31.524 -15.672 12.091  0.431  -2.716 HDPA  DG9 86 
DG9 HDPB  HDPB  H 0 0 N N N N N N -5.220  -32.786 -14.567 11.805  -1.325 -2.641 HDPB  DG9 87 
DG9 HEP   HEP   H 0 1 N N N N N N -7.852  -31.278 -13.898 10.395  1.105  0.583  HEP   DG9 88 
DG9 HEPA  HEPA  H 0 0 N N N N N N -6.786  -32.174 -12.764 11.086  1.894  -0.856 HEPA  DG9 89 
DG9 HEPB  HEPB  H 0 0 N N N N N N -7.183  -30.450 -12.451 9.527   1.043  -0.970 HEPB  DG9 90 
DG9 HG1   HG1   H 0 1 N N N N N N -5.785  -37.517 -3.806  -1.745  -2.019 5.393  HG1   DG9 91 
DG9 HG1A  HG1A  H 0 0 N N N N N N -4.091  -37.451 -4.400  -3.372  -1.519 5.913  HG1A  DG9 92 
DG9 HG1B  HG1B  H 0 0 N N N N N N -4.509  -38.479 -2.987  -3.183  -2.797 4.689  HG1B  DG9 93 
DG9 HG2   HG2   H 0 1 N N N N N N -6.407  -36.505 -1.685  -1.207  0.347  4.836  HG2   DG9 94 
DG9 HG2A  HG2A  H 0 0 N N N N N N -5.114  -37.363 -0.780  -2.233  1.255  3.700  HG2A  DG9 95 
DG9 HG2B  HG2B  H 0 0 N N N N N N -5.216  -35.570 -0.719  -2.839  0.861  5.326  HG2B  DG9 96 
DG9 O4    O4    O 0 1 N Y N N N N ?       ?       ?       15.859  -0.007 -0.670 O4    DG9 97 
DG9 H4    H4    H 0 1 N N N N N N -2.876  -27.196 -14.001 16.269  2.823  -0.548 H4    DG9 98 
DG9 H5    H5    H 0 1 N Y N N N N ?       ?       ?       15.888  -0.118 -1.630 H5    DG9 99 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DG9 C     C1    SING N N 1   
DG9 C     CA    SING N N 2   
DG9 C     S1P   SING N N 3   
DG9 N     S     SING N N 4   
DG9 N     C3    SING N N 5   
DG9 S     C1    SING N N 6   
DG9 S     O2P   DOUB N N 7   
DG9 S     O3P   DOUB N N 8   
DG9 N1    C2    DOUB Y N 9   
DG9 N1    C6    SING Y N 10  
DG9 O1    "C3'" SING N N 11  
DG9 C2    N3    SING Y N 12  
DG9 N2    CA    SING N N 13  
DG9 O2    "C2'" SING N N 14  
DG9 C3    "C4'" SING N N 15  
DG9 N3    C4    DOUB Y N 16  
DG9 O3    P2A   SING N N 17  
DG9 C4    C5    SING Y N 18  
DG9 C4    N9    SING Y N 19  
DG9 C5    C6    DOUB Y N 20  
DG9 C5    N7    SING Y N 21  
DG9 C6    N6    SING N N 22  
DG9 N7    C8    DOUB Y N 23  
DG9 C8    N9    SING Y N 24  
DG9 N9    "C1'" SING N N 25  
DG9 CA    CB    SING N N 26  
DG9 CB    CG1   SING N N 27  
DG9 CB    CG2   SING N N 28  
DG9 "C1'" "C2'" SING N N 29  
DG9 "C1'" "O4'" SING N N 30  
DG9 S1P   C2P   SING N N 31  
DG9 "C2'" "C3'" SING N N 32  
DG9 P2A   O4A   DOUB N N 33  
DG9 P2A   O6A   SING N N 34  
DG9 C2P   C3P   SING N N 35  
DG9 "C3'" "C4'" SING N N 36  
DG9 C3P   N4P   SING N N 37  
DG9 "C4'" "O4'" SING N N 38  
DG9 N4P   C5P   SING N N 39  
DG9 C5P   O5P   DOUB N N 40  
DG9 C5P   C6P   SING N N 41  
DG9 O6A   CCP   SING N N 42  
DG9 C6P   C7P   SING N N 43  
DG9 C7P   N8P   SING N N 44  
DG9 N8P   C9P   SING N N 45  
DG9 C9P   O9P   DOUB N N 46  
DG9 C9P   CAP   SING N N 47  
DG9 CAP   OAP   SING N N 48  
DG9 CAP   CBP   SING N N 49  
DG9 CBP   CCP   SING N N 50  
DG9 CBP   CDP   SING N N 51  
DG9 CBP   CEP   SING N N 52  
DG9 C     H     SING N N 53  
DG9 N     HN    SING N N 54  
DG9 C1    H1    SING N N 55  
DG9 C1    H1A   SING N N 56  
DG9 O1    HO1   SING N N 57  
DG9 C2    H2    SING N N 58  
DG9 N2    HN2   SING N N 59  
DG9 N2    HN2A  SING N N 60  
DG9 O2    HO2   SING N N 61  
DG9 C3    H3    SING N N 62  
DG9 C3    H3A   SING N N 63  
DG9 N6    HN6   SING N N 64  
DG9 N6    HN6A  SING N N 65  
DG9 C8    H8    SING N N 66  
DG9 CA    HA    SING N N 67  
DG9 CB    HB    SING N N 68  
DG9 "C1'" "H1'" SING N N 69  
DG9 "C2'" "H2'" SING N N 70  
DG9 C2P   H2P   SING N N 71  
DG9 C2P   H2PA  SING N N 72  
DG9 "C3'" "H3'" SING N N 73  
DG9 C3P   H3P   SING N N 74  
DG9 C3P   H3PA  SING N N 75  
DG9 "C4'" "H4'" SING N N 76  
DG9 N4P   HN4P  SING N N 77  
DG9 C6P   H6P   SING N N 78  
DG9 C6P   H6PA  SING N N 79  
DG9 C7P   H7P   SING N N 80  
DG9 C7P   H7PA  SING N N 81  
DG9 N8P   HN8P  SING N N 82  
DG9 CAP   HAP   SING N N 83  
DG9 OAP   HOAP  SING N N 84  
DG9 CCP   HCP   SING N N 85  
DG9 CCP   HCPA  SING N N 86  
DG9 CDP   HDP   SING N N 87  
DG9 CDP   HDPA  SING N N 88  
DG9 CDP   HDPB  SING N N 89  
DG9 CEP   HEP   SING N N 90  
DG9 CEP   HEPA  SING N N 91  
DG9 CEP   HEPB  SING N N 92  
DG9 CG1   HG1   SING N N 93  
DG9 CG1   HG1A  SING N N 94  
DG9 CG1   HG1B  SING N N 95  
DG9 CG2   HG2   SING N N 96  
DG9 CG2   HG2A  SING N N 97  
DG9 CG2   HG2B  SING N N 98  
DG9 P2A   O4    SING N N 99  
DG9 O3    H4    SING N N 100 
DG9 O4    H5    SING N N 101 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DG9 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC(C)(C)C(O)C(=O)NCCC(=O)NCCSC(CS(=O)(=O)NCC1OC(n2cnc3c(N)ncnc32)C(O)C1O)C(N)C(C)C"                                                                                                                                                                                                                   
DG9 InChI            InChI                1.06  "InChI=1S/C27H48N9O12PS2/c1-14(2)18(28)16(50-8-7-30-17(37)5-6-31-25(41)22(40)27(3,4)11-47-49(42,43)44)10-51(45,46)35-9-15-20(38)21(39)26(48-15)36-13-34-19-23(29)32-12-33-24(19)36/h12-16,18,20-22,26,35,38-40H,5-11,28H2,1-4H3,(H,30,37)(H,31,41)(H2,29,32,33)(H2,42,43,44)/t15-,16+,18-,20-,21-,22+,26-/m1/s1" 
DG9 InChIKey         InChI                1.06  LAWRAYXGFUHBCH-AWSFPXBRSA-N                                                                                                                                                                                                                                                                                      
DG9 SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@@H](N)[C@H](C[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                                                                                 
DG9 SMILES           CACTVS               3.385 "CC(C)[CH](N)[CH](C[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(O)=O"                                                                                                                                                                                          
DG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H]([C@H](CS(=O)(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O)N"                                                                                                                                                                                    
DG9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(CS(=O)(=O)NCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O)N"                                                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DG9 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-{[(2R,3R)-3-amino-2-{[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]sulfanyl}-4-methylpentane-1-sulfonyl]amino}-5'-deoxyadenosine"                                                                                                            
DG9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[2-[(2~{R},3~{R})-1-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfamoyl]-3-azanyl-4-methyl-pentan-2-yl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DG9 "Create component"         2012-01-30 RCSB 
DG9 "Modify leaving atom flag" 2022-06-22 RCSB 
DG9 "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DG9 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P2A 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
