data_CY9
#

_chem_comp.id                                   CY9
_chem_comp.name                                 "(3S,3aR,4S,6S,6aR,7E,10S,12R,13E,15R,15aR)-3-benzyl-6,12-dihydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2,3,3a,4,5,6,6a,9,10,11,12,15-dodecahydro-1H-cycloundeca[d]isoindol-15-yl acetate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C30 H37 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Cytochalasin D"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-09-25
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       507.618
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CY9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3EKS
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CY9  C1    C1    C  0  1  N  N  N  159.753  -16.491  31.326  159.753  -16.491  31.326  C1    CY9   1  
CY9  C5    C5    C  0  1  N  N  S  157.034  -14.931  29.815  157.034  -14.931  29.815  C5    CY9   2  
CY9  C4    C4    C  0  1  N  N  R  157.572  -16.273  30.319  157.572  -16.273  30.319  C4    CY9   3  
CY9  C3    C3    C  0  1  N  N  S  158.616  -16.842  29.353  158.616  -16.842  29.353  C3    CY9   4  
CY9  O1    O1    O  0  1  N  N  N  160.691  -16.375  32.115  160.691  -16.375  32.115  O1    CY9   5  
CY9  C6    C6    C  0  1  N  N  N  158.175  -13.918  29.891  158.175  -13.918  29.891  C6    CY9   6  
CY9  C25   C25   C  0  1  Y  N  N  157.191  -18.037  26.650  157.191  -18.037  26.650  C25   CY9   7  
CY9  C26   C26   C  0  1  Y  N  N  156.120  -18.190  25.778  156.120  -18.190  25.778  C26   CY9   8  
CY9  C27   C27   C  0  1  Y  N  N  154.914  -18.700  26.246  154.914  -18.700  26.246  C27   CY9   9  
CY9  C28   C28   C  0  1  Y  N  N  154.778  -19.055  27.583  154.778  -19.055  27.583  C28   CY9  10  
CY9  C29   C29   C  0  1  Y  N  N  155.849  -18.902  28.456  155.849  -18.902  28.456  C29   CY9  11  
CY9  C24   C24   C  0  1  Y  N  N  157.057  -18.395  27.988  157.057  -18.395  27.988  C24   CY9  12  
CY9  C10   C10   C  0  1  N  N  N  158.255  -18.267  28.929  158.255  -18.267  28.929  C10   CY9  13  
CY9  N2    N2    N  0  1  N  N  N  159.906  -16.864  30.059  159.906  -16.864  30.059  N2    CY9  14  
CY9  C9    C9    C  0  1  N  N  R  158.300  -16.149  31.663  158.300  -16.149  31.663  C9    CY9  15  
CY9  C11   C11   C  0  1  N  N  N  156.508  -15.041  28.382  156.508  -15.041  28.382  C11   CY9  16  
CY9  C12   C12   C  0  1  N  N  N  158.653  -13.253  28.768  158.653  -13.253  28.768  C12   CY9  17  
CY9  C7    C7    C  0  1  N  N  S  158.818  -13.703  31.260  158.818  -13.703  31.260  C7    CY9  18  
CY9  O7    O7    O  0  1  N  N  N  158.505  -12.381  31.706  158.505  -12.381  31.706  O7    CY9  19  
CY9  C8    C8    C  0  1  N  N  R  158.228  -14.727  32.233  158.228  -14.727  32.233  C8    CY9  20  
CY9  C13   C13   C  0  1  N  N  N  158.994  -14.587  33.552  158.994  -14.587  33.552  C13   CY9  21  
CY9  C14   C14   C  0  1  N  N  N  158.396  -13.960  34.639  158.396  -13.960  34.639  C14   CY9  22  
CY9  C15   C15   C  0  1  N  N  N  159.079  -13.806  35.842  159.079  -13.806  35.842  C15   CY9  23  
CY9  C16   C16   C  0  1  N  N  S  158.853  -14.953  36.828  158.853  -14.953  36.828  C16   CY9  24  
CY9  C22   C22   C  0  1  N  N  N  159.298  -14.554  38.237  159.298  -14.554  38.237  C22   CY9  25  
CY9  C17   C17   C  0  1  N  N  N  159.625  -16.201  36.392  159.625  -16.201  36.392  C17   CY9  26  
CY9  O17   O17   O  0  1  N  N  N  160.852  -16.180  36.305  160.852  -16.180  36.305  O17   CY9  27  
CY9  C18   C18   C  0  1  N  N  R  158.854  -17.485  36.085  158.854  -17.485  36.085  C18   CY9  28  
CY9  O18   O18   O  0  1  N  N  N  159.787  -18.520  35.761  159.787  -18.520  35.761  O18   CY9  29  
CY9  C23   C23   C  0  1  N  N  N  158.024  -17.874  37.310  158.024  -17.874  37.310  C23   CY9  30  
CY9  C19   C19   C  0  1  N  N  N  158.021  -17.236  35.000  158.021  -17.236  35.000  C19   CY9  31  
CY9  C20   C20   C  0  1  N  N  N  158.493  -17.435  33.708  158.493  -17.435  33.708  C20   CY9  32  
CY9  C21   C21   C  0  1  N  N  R  157.679  -17.182  32.609  157.679  -17.182  32.609  C21   CY9  33  
CY9  O21   O21   O  0  1  N  N  N  156.395  -16.712  33.043  156.395  -16.712  33.043  O21   CY9  34  
CY9  C30   C30   C  0  1  N  N  N  155.426  -17.638  32.813  155.426  -17.638  32.813  C30   CY9  35  
CY9  C31   C31   C  0  1  N  N  N  154.103  -17.338  33.118  154.103  -17.338  33.118  C31   CY9  36  
CY9  O30   O30   O  0  1  N  N  N  155.708  -18.726  32.313  155.708  -18.726  32.313  O30   CY9  37  
CY9  H5    H5    H  0  1  N  N  N  156.188  -14.611  30.440  156.188  -14.611  30.440  H5    CY9  38  
CY9  H4    H4    H  0  1  N  N  N  156.686  -16.918  30.411  156.686  -16.918  30.411  H4    CY9  39  
CY9  H3    H3    H  0  1  N  N  N  158.660  -16.218  28.448  158.660  -16.218  28.448  H3    CY9  40  
CY9  H25   H25   H  0  1  N  N  N  158.128  -17.640  26.289  158.128  -17.640  26.289  H25   CY9  41  
CY9  H26   H26   H  0  1  N  N  N  156.224  -17.913  24.739  156.224  -17.913  24.739  H26   CY9  42  
CY9  H27   H27   H  0  1  N  N  N  154.081  -18.821  25.569  154.081  -18.821  25.569  H27   CY9  43  
CY9  H28   H28   H  0  1  N  N  N  153.840  -19.450  27.944  153.840  -19.450  27.944  H28   CY9  44  
CY9  H29   H29   H  0  1  N  N  N  155.743  -19.176  29.495  155.743  -19.176  29.495  H29   CY9  45  
CY9  H10   H10   H  0  1  N  N  N  159.129  -18.688  28.410  159.129  -18.688  28.410  H10   CY9  46  
CY9  H10A  H10A  H  0  0  N  N  N  157.974  -18.796  29.852  157.974  -18.796  29.851  H10A  CY9  47  
CY9  HN2   HN2   H  0  1  N  N  N  160.778  -17.124  29.644  160.778  -17.124  29.643  HN2   CY9  48  
CY9  H11   H11   H  0  1  N  N  N  155.408  -15.067  28.395  155.408  -15.067  28.396  H11   CY9  49  
CY9  H11A  H11A  H  0  0  N  N  N  156.847  -14.171  27.800  156.847  -14.172  27.799  H11A  CY9  50  
CY9  H11B  H11B  H  0  0  N  N  N  156.891  -15.963  27.921  156.891  -15.963  27.921  H11B  CY9  51  
CY9  H12   H12   H  0  1  N  N  N  159.452  -12.599  29.086  159.452  -12.599  29.086  H12   CY9  52  
CY9  H12A  H12A  H  0  0  N  N  N  158.290  -13.369  27.757  158.290  -13.369  27.757  H12A  CY9  53  
CY9  H7    H7    H  0  1  N  N  N  159.910  -13.825  31.205  159.910  -13.825  31.205  H7    CY9  54  
CY9  HO7   HO7   H  0  1  N  N  N  158.436  -12.374  32.653  158.436  -12.374  32.653  HO7   CY9  55  
CY9  H8    H8    H  0  1  N  N  N  157.158  -14.536  32.401  157.158  -14.535  32.401  H8    CY9  56  
CY9  H13   H13   H  0  1  N  N  N  159.998  -14.975  33.637  159.998  -14.975  33.637  H13   CY9  57  
CY9  H14   H14   H  0  1  N  N  N  157.387  -13.587  34.549  157.387  -13.587  34.549  H14   CY9  58  
CY9  H15   H15   H  0  1  N  N  N  160.155  -13.754  35.620  160.155  -13.754  35.620  H15   CY9  59  
CY9  H15A  H15A  H  0  0  N  N  N  158.696  -12.890  36.317  158.697  -12.891  36.317  H15A  CY9  60  
CY9  H16   H16   H  0  1  N  N  N  157.776  -15.176  36.838  157.776  -15.176  36.838  H16   CY9  61  
CY9  H22   H22   H  0  1  N  N  N  160.394  -14.458  38.263  160.393  -14.458  38.263  H22   CY9  62  
CY9  H22A  H22A  H  0  0  N  N  N  158.840  -13.591  38.507  158.839  -13.591  38.507  H22A  CY9  63  
CY9  H22B  H22B  H  0  0  N  N  N  158.981  -15.326  38.954  158.981  -15.326  38.954  H22B  CY9  64  
CY9  HO18  HO18  H  0  0  N  N  N  159.994  -18.482  34.835  159.994  -18.482  34.835  HO18  CY9  65  
CY9  H23   H23   H  0  1  N  N  N  158.683  -17.967  38.186  158.683  -17.967  38.186  H23   CY9  66  
CY9  H23A  H23A  H  0  0  N  N  N  157.268  -17.098  37.502  157.268  -17.098  37.502  H23A  CY9  67  
CY9  H23B  H23B  H  0  0  N  N  N  157.524  -18.836  37.123  157.524  -18.836  37.124  H23B  CY9  68  
CY9  H19   H19   H  0  1  N  N  N  157.011  -16.889  35.161  157.011  -16.889  35.161  H19   CY9  69  
CY9  H20   H20   H  0  1  N  N  N  159.502  -17.790  33.556  159.502  -17.790  33.556  H20   CY9  70  
CY9  H21   H21   H  0  1  N  N  N  157.569  -18.129  32.060  157.569  -18.129  32.060  H21   CY9  71  
CY9  H31   H31   H  0  1  N  N  N  153.987  -17.259  34.209  153.987  -17.259  34.209  H31   CY9  72  
CY9  H31A  H31A  H  0  0  N  N  N  153.827  -16.382  32.650  153.827  -16.382  32.650  H31A  CY9  73  
CY9  H31B  H31B  H  0  0  N  N  N  153.449  -18.136  32.737  153.449  -18.136  32.737  H31B  CY9  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CY9  C1   O1    DOUB  N  N   1  
CY9  C1   N2    SING  N  N   2  
CY9  C1   C9    SING  N  N   3  
CY9  C5   C4    SING  N  N   4  
CY9  C5   C6    SING  N  N   5  
CY9  C5   C11   SING  N  N   6  
CY9  C4   C3    SING  N  N   7  
CY9  C4   C9    SING  N  N   8  
CY9  C3   C10   SING  N  N   9  
CY9  C3   N2    SING  N  N  10  
CY9  C6   C12   DOUB  N  N  11  
CY9  C6   C7    SING  N  N  12  
CY9  C25  C26   DOUB  Y  N  13  
CY9  C25  C24   SING  Y  N  14  
CY9  C26  C27   SING  Y  N  15  
CY9  C27  C28   DOUB  Y  N  16  
CY9  C28  C29   SING  Y  N  17  
CY9  C29  C24   DOUB  Y  N  18  
CY9  C24  C10   SING  N  N  19  
CY9  C9   C8    SING  N  N  20  
CY9  C9   C21   SING  N  N  21  
CY9  C7   O7    SING  N  N  22  
CY9  C7   C8    SING  N  N  23  
CY9  C8   C13   SING  N  N  24  
CY9  C13  C14   DOUB  N  N  25  
CY9  C14  C15   SING  N  N  26  
CY9  C15  C16   SING  N  N  27  
CY9  C16  C22   SING  N  N  28  
CY9  C16  C17   SING  N  N  29  
CY9  C17  O17   DOUB  N  N  30  
CY9  C17  C18   SING  N  N  31  
CY9  C18  O18   SING  N  N  32  
CY9  C18  C23   SING  N  N  33  
CY9  C18  C19   SING  N  N  34  
CY9  C19  C20   DOUB  N  N  35  
CY9  C20  C21   SING  N  N  36  
CY9  C21  O21   SING  N  N  37  
CY9  O21  C30   SING  N  N  38  
CY9  C30  C31   SING  N  N  39  
CY9  C30  O30   DOUB  N  N  40  
CY9  C5   H5    SING  N  N  41  
CY9  C4   H4    SING  N  N  42  
CY9  C3   H3    SING  N  N  43  
CY9  C25  H25   SING  N  E  44  
CY9  C26  H26   SING  N  N  45  
CY9  C27  H27   SING  N  N  46  
CY9  C28  H28   SING  N  N  47  
CY9  C29  H29   SING  N  N  48  
CY9  C10  H10   SING  N  N  49  
CY9  C10  H10A  SING  N  N  50  
CY9  N2   HN2   SING  N  N  51  
CY9  C11  H11   SING  N  N  52  
CY9  C11  H11A  SING  N  N  53  
CY9  C11  H11B  SING  N  N  54  
CY9  C12  H12   SING  N  N  55  
CY9  C12  H12A  SING  N  N  56  
CY9  C7   H7    SING  N  N  57  
CY9  O7   HO7   SING  N  N  58  
CY9  C8   H8    SING  N  N  59  
CY9  C13  H13   SING  N  N  60  
CY9  C14  H14   SING  N  N  61  
CY9  C15  H15   SING  N  N  62  
CY9  C15  H15A  SING  N  N  63  
CY9  C16  H16   SING  N  N  64  
CY9  C22  H22   SING  N  N  65  
CY9  C22  H22A  SING  N  E  66  
CY9  C22  H22B  SING  N  N  67  
CY9  O18  HO18  SING  N  N  68  
CY9  C23  H23   SING  N  N  69  
CY9  C23  H23A  SING  N  N  70  
CY9  C23  H23B  SING  N  N  71  
CY9  C19  H19   SING  N  N  72  
CY9  C20  H20   SING  N  N  73  
CY9  C21  H21   SING  N  N  74  
CY9  C31  H31   SING  N  N  75  
CY9  C31  H31A  SING  N  N  76  
CY9  C31  H31B  SING  N  N  77  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CY9  SMILES            ACDLabs               10.04  "O=C1NC(C3C12C(C=CCC(C(=O)C(O)(C=CC2OC(=O)C)C)C)C(O)/C(=C)C3C)Cc4ccccc4"  
CY9  SMILES_CANONICAL  CACTVS                3.341  "C[C@H]1C/C=C/[C@H]2[C@H](O)C(=C)[C@@H](C)[C@H]3[C@H](Cc4ccccc4)NC(=O)[C@@]23[C@H](OC(C)=O)/C=C/[C@@](C)(O)C1=O"  
CY9  SMILES            CACTVS                3.341  "C[CH]1CC=C[CH]2[CH](O)C(=C)[CH](C)[CH]3[CH](Cc4ccccc4)NC(=O)[C]23[CH](OC(C)=O)C=C[C](C)(O)C1=O"  
CY9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@H]1C\C=C\[C@H]2[C@@H](C(=C)[C@H]([C@@H]3[C@@]2([C@@H](\C=C\[C@@](C1=O)(C)O)OC(=O)C)C(=O)N[C@H]3Cc4ccccc4)C)O"  
CY9  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1CC=CC2C(C(=C)C(C3C2(C(C=CC(C1=O)(C)O)OC(=O)C)C(=O)NC3Cc4ccccc4)C)O"  
CY9  InChI             InChI                 1.03   "InChI=1S/C30H37NO6/c1-17-10-9-13-22-26(33)19(3)18(2)25-23(16-21-11-7-6-8-12-21)31-28(35)30(22,25)24(37-20(4)32)14-15-29(5,36)27(17)34/h6-9,11-15,17-18,22-26,33,36H,3,10,16H2,1-2,4-5H3,(H,31,35)/b13-9+,15-14+/t17-,18+,22-,23-,24+,25-,26+,29+,30+/m0/s1"  
CY9  InChIKey          InChI                 1.03   SDZRWUKZFQQKKV-JHADDHBZSA-N  
#
_pdbx_chem_comp_identifier.comp_id          CY9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "(3S,3aR,4S,6S,6aR,7E,10S,12R,13E,15R,15aR)-3-benzyl-6,12-dihydroxy-4,10,12-trimethyl-5-methylidene-1,11-dioxo-2,3,3a,4,5,6,6a,9,10,11,12,15-dodecahydro-1H-cycloundeca[d]isoindol-15-yl acetate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CY9  "Create component"      2008-09-25  RCSB  
CY9  "Modify aromatic_flag"  2011-06-04  RCSB  
CY9  "Modify descriptor"     2011-06-04  RCSB  
CY9  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CY9
_pdbx_chem_comp_synonyms.name        "Cytochalasin D"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
