data_CK9
#

_chem_comp.id                                   CK9
_chem_comp.name                                 "2-{[(2-{[(1R)-1-(HYDROXYMETHYL)PROPYL]AMINO}-9-ISOPROPYL-9H-PURIN-6-YL)AMINO]METHYL}PHENOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H26 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "OLOMOUCINE II"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-09-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       370.449
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CK9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2A0C
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CK9  O27   O27   O  0  1  N  N  N   3.474   9.847  27.989   3.762  -0.545  -2.057  O27   CK9   1  
CK9  C24   C24   C  0  1  Y  N  N   4.132   9.728  29.194   4.424  -0.610  -0.872  C24   CK9   2  
CK9  C23   C23   C  0  1  Y  N  N   4.259  10.823  30.099   5.719  -1.107  -0.825  C23   CK9   3  
CK9  C22   C22   C  0  1  Y  N  N   4.942  10.645  31.343   6.389  -1.173   0.381  C22   CK9   4  
CK9  C21   C21   C  0  1  Y  N  N   5.497   9.375  31.679   5.773  -0.738   1.540  C21   CK9   5  
CK9  C20   C20   C  0  1  Y  N  N   5.371   8.283  30.774   4.485  -0.237   1.495  C20   CK9   6  
CK9  C19   C19   C  0  1  Y  N  N   4.706   8.476  29.538   3.811  -0.170   0.292  C19   CK9   7  
CK9  C18   C18   C  0  1  N  N  N   4.523   7.348  28.579   2.407   0.376   0.244  C18   CK9   8  
CK9  N17   N17   N  0  1  N  N  N   3.528   6.487  28.697   1.452  -0.735   0.198  N17   CK9   9  
CK9  C4    C4    C  0  1  Y  N  N   2.424   6.465  28.168   0.094  -0.478   0.149  C4    CK9  10  
CK9  C5    C5    C  0  1  Y  N  N   1.515   5.407  28.298  -0.835  -1.532   0.105  C5    CK9  11  
CK9  N9    N9    N  0  1  Y  N  N   1.498   4.212  28.917  -0.740  -2.884   0.095  N9    CK9  12  
CK9  C8    C8    C  0  1  Y  N  N   0.369   3.607  28.634  -1.932  -3.402   0.046  C8    CK9  13  
CK9  C6    C6    C  0  1  Y  N  N   0.265   5.538  27.584  -2.202  -1.213   0.056  C6    CK9  14  
CK9  N7    N7    N  0  1  Y  N  N  -0.445   4.386  27.811  -2.870  -2.411   0.020  N7    CK9  15  
CK9  C10   C10   C  0  1  N  N  N  -1.809   4.059  27.248  -4.322  -2.593  -0.035  C10   CK9  16  
CK9  C12   C12   C  0  1  N  N  N  -1.637   3.709  25.781  -4.692  -3.360  -1.307  C12   CK9  17  
CK9  C11   C11   C  0  1  N  N  N  -2.932   5.114  27.375  -4.784  -3.384   1.190  C11   CK9  18  
CK9  N3    N3    N  0  1  Y  N  N  -0.034   6.631  26.807  -2.570   0.065   0.059  N3    CK9  19  
CK9  C2    C2    C  0  1  Y  N  N   0.855   7.655  26.710  -1.662   1.026   0.097  C2    CK9  20  
CK9  N1    N1    N  0  1  Y  N  N   2.032   7.556  27.393  -0.361   0.771   0.143  N1    CK9  21  
CK9  N13   N13   N  0  1  N  N  N   0.623   8.697  25.982  -2.085   2.346   0.093  N13   CK9  22  
CK9  C14   C14   C  0  1  N  N  R  -0.539   8.898  25.047  -1.101   3.430   0.139  C14   CK9  23  
CK9  C25   C25   C  0  1  N  N  N  -1.667   9.626  25.874  -1.748   4.681   0.736  C25   CK9  24  
CK9  C26   C26   C  0  1  N  N  N  -1.594  11.153  26.144  -2.125   4.414   2.195  C26   CK9  25  
CK9  C15   C15   C  0  1  N  N  N  -1.070   7.631  24.272  -0.612   3.736  -1.278  C15   CK9  26  
CK9  O16   O16   O  0  1  N  N  N  -0.206   7.036  23.299  -1.697   4.243  -2.057  O16   CK9  27  
CK9  H27   H27   H  0  1  N  N  N   2.537   9.874  28.141   3.294  -1.385  -2.162  H27   CK9  28  
CK9  H23   H23   H  0  1  N  N  N   3.840  11.785  29.845   6.200  -1.447  -1.730  H23   CK9  29  
CK9  H22   H22   H  0  1  N  N  N   5.038  11.474  32.029   7.395  -1.563   0.418  H22   CK9  30  
CK9  H21   H21   H  0  1  N  N  N   6.012   9.242  32.619   6.299  -0.789   2.482  H21   CK9  31  
CK9  H20   H20   H  0  1  N  N  N   5.779   7.316  31.028   4.006   0.102   2.402  H20   CK9  32  
CK9  H181  1H18  H  0  0  N  N  N   5.407   6.722  28.772   2.287   0.994  -0.646  H181  CK9  33  
CK9  H182  2H18  H  0  0  N  N  N   4.391   7.818  27.593   2.220   0.978   1.133  H182  CK9  34  
CK9  H17   H17   H  0  1  N  N  N   3.706   5.727  29.322   1.773  -1.650   0.201  H17   CK9  35  
CK9  H8    H8    H  0  1  N  N  N   0.102   2.625  28.994  -2.148  -4.460   0.027  H8    CK9  36  
CK9  H10   H10   H  0  1  N  N  N  -2.167   3.233  27.881  -4.810  -1.619  -0.044  H10   CK9  37  
CK9  H121  1H12  H  0  0  N  N  N  -2.488   3.097  25.448  -5.773  -3.496  -1.348  H121  CK9  38  
CK9  H122  2H12  H  0  0  N  N  N  -0.703   3.144  25.646  -4.363  -2.797  -2.180  H122  CK9  39  
CK9  H123  3H12  H  0  0  N  N  N  -1.595   4.633  25.186  -4.204  -4.335  -1.298  H123  CK9  40  
CK9  H111  1H11  H  0  0  N  N  N  -3.866   4.707  26.959  -4.521  -2.837   2.096  H111  CK9  41  
CK9  H112  2H11  H  0  0  N  N  N  -2.647   6.021  26.821  -5.865  -3.519   1.149  H112  CK9  42  
CK9  H113  3H11  H  0  0  N  N  N  -3.082   5.365  28.436  -4.296  -4.358   1.199  H113  CK9  43  
CK9  H13   H13   H  0  1  N  N  N   1.283   9.446  26.046  -3.032   2.551   0.059  H13   CK9  44  
CK9  H14   H14   H  0  1  N  N  N  -0.179   9.509  24.206  -0.256   3.128   0.758  H14   CK9  45  
CK9  H251  1H25  H  0  0  N  N  N  -1.565   9.188  26.878  -2.645   4.932   0.169  H251  CK9  46  
CK9  H252  2H25  H  0  0  N  N  N  -2.601   9.464  25.316  -1.045   5.512   0.689  H252  CK9  47  
CK9  H261  1H26  H  0  0  N  N  N  -2.474  11.645  25.705  -2.586   5.305   2.620  H261  CK9  48  
CK9  H262  2H26  H  0  0  N  N  N  -0.680  11.562  25.690  -2.829   3.582   2.242  H262  CK9  49  
CK9  H263  3H26  H  0  0  N  N  N  -1.577  11.334  27.229  -1.228   4.163   2.761  H263  CK9  50  
CK9  H151  1H15  H  0  0  N  N  N  -1.936   7.993  23.698   0.184   4.480  -1.235  H151  CK9  51  
CK9  H152  2H15  H  0  0  N  N  N  -1.277   6.859  25.028  -0.231   2.823  -1.736  H152  CK9  52  
CK9  H16   H16   H  0  1  N  N  N  -0.684   6.904  22.489  -1.346   4.422  -2.941  H16   CK9  53  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CK9  O27  C24   SING  N  N   1  
CK9  O27  H27   SING  N  N   2  
CK9  C24  C23   DOUB  Y  N   3  
CK9  C24  C19   SING  Y  N   4  
CK9  C23  C22   SING  Y  N   5  
CK9  C23  H23   SING  N  N   6  
CK9  C22  C21   DOUB  Y  N   7  
CK9  C22  H22   SING  N  N   8  
CK9  C21  C20   SING  Y  N   9  
CK9  C21  H21   SING  N  N  10  
CK9  C20  C19   DOUB  Y  N  11  
CK9  C20  H20   SING  N  N  12  
CK9  C19  C18   SING  N  N  13  
CK9  C18  N17   SING  N  N  14  
CK9  C18  H181  SING  N  N  15  
CK9  C18  H182  SING  N  N  16  
CK9  N17  C4    SING  N  N  17  
CK9  N17  H17   SING  N  N  18  
CK9  C4   C5    SING  Y  N  19  
CK9  C4   N1    DOUB  Y  N  20  
CK9  C5   N9    SING  Y  N  21  
CK9  C5   C6    DOUB  Y  N  22  
CK9  N9   C8    DOUB  Y  N  23  
CK9  C8   N7    SING  Y  N  24  
CK9  C8   H8    SING  N  N  25  
CK9  C6   N7    SING  Y  N  26  
CK9  C6   N3    SING  Y  N  27  
CK9  N7   C10   SING  N  N  28  
CK9  C10  C12   SING  N  N  29  
CK9  C10  C11   SING  N  N  30  
CK9  C10  H10   SING  N  N  31  
CK9  C12  H121  SING  N  N  32  
CK9  C12  H122  SING  N  N  33  
CK9  C12  H123  SING  N  N  34  
CK9  C11  H111  SING  N  N  35  
CK9  C11  H112  SING  N  N  36  
CK9  C11  H113  SING  N  N  37  
CK9  N3   C2    DOUB  Y  N  38  
CK9  C2   N1    SING  Y  N  39  
CK9  C2   N13   SING  N  N  40  
CK9  N13  C14   SING  N  N  41  
CK9  N13  H13   SING  N  N  42  
CK9  C14  C25   SING  N  N  43  
CK9  C14  C15   SING  N  N  44  
CK9  C14  H14   SING  N  N  45  
CK9  C25  C26   SING  N  N  46  
CK9  C25  H251  SING  N  N  47  
CK9  C25  H252  SING  N  N  48  
CK9  C26  H261  SING  N  N  49  
CK9  C26  H262  SING  N  N  50  
CK9  C26  H263  SING  N  N  51  
CK9  C15  O16   SING  N  N  52  
CK9  C15  H151  SING  N  N  53  
CK9  C15  H152  SING  N  N  54  
CK9  O16  H16   SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CK9  SMILES            ACDLabs               10.04  "n1c(c2ncn(c2nc1NC(CC)CO)C(C)C)NCc3ccccc3O"  
CK9  SMILES_CANONICAL  CACTVS                3.341  "CC[C@H](CO)Nc1nc(NCc2ccccc2O)c3ncn(C(C)C)c3n1"  
CK9  SMILES            CACTVS                3.341  "CC[CH](CO)Nc1nc(NCc2ccccc2O)c3ncn(C(C)C)c3n1"  
CK9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC[C@H](CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccccc3O"  
CK9  SMILES            "OpenEye OEToolkits"  1.5.0  "CCC(CO)Nc1nc(c2c(n1)n(cn2)C(C)C)NCc3ccccc3O"  
CK9  InChI             InChI                 1.03   "InChI=1S/C19H26N6O2/c1-4-14(10-26)22-19-23-17(20-9-13-7-5-6-8-15(13)27)16-18(24-19)25(11-21-16)12(2)3/h5-8,11-12,14,26-27H,4,9-10H2,1-3H3,(H2,20,22,23,24)/t14-/m1/s1"  
CK9  InChIKey          InChI                 1.03   NDUVSANREQEDRE-CQSZACIVSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
CK9  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-({[2-{[(1R)-1-(hydroxymethyl)propyl]amino}-9-(1-methylethyl)-9H-purin-6-yl]amino}methyl)phenol"  
CK9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[[[2-[[(2R)-1-hydroxybutan-2-yl]amino]-9-propan-2-yl-purin-6-yl]amino]methyl]phenol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CK9  "Create component"   2005-09-08  RCSB  
CK9  "Modify descriptor"  2011-06-04  RCSB  
CK9  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     CK9
_pdbx_chem_comp_synonyms.name        "OLOMOUCINE II"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
