data_BF9
# 
_chem_comp.id                                    BF9 
_chem_comp.name                                  "[(4Z)-2-[(1R,2S)-1-amino-2-hydroxypropyl]-4-{[4-(benzenecarbonyl)phenyl]methylidene}-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C22 H21 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               "THR, PHE, GLY" 
_chem_comp.pdbx_synonyms                         "PEPTIDE DERIVED CHROMOPHORE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-12-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        407.419 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BF9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5YR2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BF9 C01  C01 C 0 1 Y N N N N N 5.097  -14.094 68.081 -5.883 0.937  0.625  C01 BF9 1  
BF9 C02  C02 C 0 1 Y N N N N N 3.747  -14.157 68.404 -7.086 1.605  0.707  C02 BF9 2  
BF9 C03  C03 C 0 1 Y N N N N N 3.122  -13.090 69.041 -8.262 0.967  0.353  C03 BF9 3  
BF9 C04  C04 C 0 1 Y N N N N N 3.842  -11.946 69.376 -8.239 -0.346 -0.084 C04 BF9 4  
BF9 C05  C05 C 0 1 Y N N N N N 5.190  -11.895 69.052 -7.043 -1.027 -0.171 C05 BF9 5  
BF9 C06  C06 C 0 1 Y N N N N N 5.824  -12.969 68.423 -5.852 -0.388 0.184  C06 BF9 6  
BF9 C07  C07 C 0 1 N N N N N N 7.285  -12.876 68.053 -4.567 -1.112 0.094  C07 BF9 7  
BF9 CZ   CZ  C 0 1 Y N N N N N 8.213  -12.022 68.865 -3.309 -0.361 -0.097 C09 BF9 8  
BF9 CE2  CE2 C 0 1 Y N N N N N 8.088  -11.931 70.247 -2.085 -0.960 0.213  C10 BF9 9  
BF9 CD2  CD2 C 0 1 Y N N N N N 8.947  -11.112 70.954 -0.921 -0.268 0.038  C11 BF9 10 
BF9 CG2  CG2 C 0 1 Y N N N N N 9.982  -10.448 70.299 -0.954 1.044  -0.455 C12 BF9 11 
BF9 CD1  CD1 C 0 1 Y N N N N N 10.069 -10.487 68.911 -2.183 1.643  -0.767 C13 BF9 12 
BF9 CE1  CE1 C 0 1 Y N N N N N 9.199  -11.302 68.203 -3.344 0.946  -0.594 C14 BF9 13 
BF9 CB2  CB2 C 0 1 N N N N N N 10.816 -9.478  71.006 0.295  1.789  -0.644 C15 BF9 14 
BF9 CA2  CA2 C 0 1 N N N Y N N 10.802 -9.176  72.440 1.497  1.168  -0.457 C16 BF9 15 
BF9 C1   C1  C 0 1 N N N Y N N 10.475 -9.291  74.598 2.980  -0.337 0.049  C18 BF9 16 
BF9 C2   C2  C 0 1 N N N Y N N 11.519 -8.127  73.132 2.841  1.728  -0.709 C20 BF9 17 
BF9 CA3  CA3 C 0 1 N N N Y N N 11.831 -7.282  75.414 5.164  0.818  -0.454 C22 BF9 18 
BF9 C3   C3  C 0 1 N N N Y N Y 13.159 -7.505  76.067 5.710  1.335  0.851  C23 BF9 19 
BF9 CA1  CA1 C 0 1 N N R Y N N 9.967  -9.726  75.934 3.587  -1.636 0.512  C24 BF9 20 
BF9 CB1  CB1 C 0 1 N N S N N N 9.611  -11.218 75.997 3.628  -2.625 -0.655 C27 BF9 21 
BF9 CG1  CG1 C 0 1 N N N N N N 8.476  -11.594 75.077 4.245  -3.944 -0.184 C28 BF9 22 
BF9 N2   N2  N 0 1 N N N Y N N 10.175 -9.886  73.394 1.706  -0.100 0.008  N17 BF9 23 
BF9 N3   N3  N 0 1 N N N Y N N 11.301 -8.225  74.429 3.703  0.742  -0.376 N19 BF9 24 
BF9 N1   N1  N 0 1 N N N Y Y N 8.810  -8.875  76.281 2.774  -2.196 1.600  N25 BF9 25 
BF9 O08  O08 O 0 1 N N N N N N 7.678  -13.425 67.038 -4.545 -2.324 0.176  O08 BF9 26 
BF9 O2   O2  O 0 1 N N N Y N N 12.286 -7.192  72.550 3.112  2.838  -1.127 O21 BF9 27 
BF9 O3   O3  O 0 1 N N N Y N Y 13.652 -6.495  76.549 4.957  1.611  1.755  O26 BF9 28 
BF9 OG1  OG1 O 0 1 N N N N N N 9.199  -11.569 77.329 4.419  -2.080 -1.713 O29 BF9 29 
BF9 H1   H1  H 0 1 N N N N N N 5.574  -14.916 67.568 -4.965 1.438  0.897  H1  BF9 30 
BF9 H22  H2  H 0 1 N N N N N N 3.178  -15.042 68.158 -7.111 2.630  1.048  H2  BF9 31 
BF9 H3   H3  H 0 1 N N N N N N 2.070  -13.149 69.278 -9.201 1.495  0.420  H3  BF9 32 
BF9 H4   H4  H 0 1 N N N N N N 3.362  -11.118 69.876 -9.161 -0.838 -0.358 H4  BF9 33 
BF9 H5   H5  H 0 1 N N N N N N 5.759  -11.009 69.290 -7.027 -2.052 -0.512 H5  BF9 34 
BF9 H6   H6  H 0 1 N N N N N N 7.326  -12.496 70.763 -2.059 -1.971 0.593  H6  BF9 35 
BF9 H7   H7  H 0 1 N N N N N N 8.816  -10.986 72.019 0.025  -0.731 0.278  H7  BF9 36 
BF9 H8   H8  H 0 1 N N N N N N 10.804 -9.890  68.392 -2.210 2.653  -1.146 H8  BF9 37 
BF9 H9   H9  H 0 1 N N N N N N 9.289  -11.377 67.129 -4.291 1.405  -0.838 H9  BF9 38 
BF9 H10  H10 H 0 1 N N N N N N 11.521 -8.922  70.405 0.265  2.830  -0.932 H10 BF9 39 
BF9 HA31 H13 H 0 1 N N N Y N N 11.892 -6.306  74.910 5.450  1.493  -1.261 H13 BF9 40 
BF9 HA32 H14 H 0 1 N N N Y N N 11.090 -7.230  76.225 5.569  -0.175 -0.651 H14 BF9 41 
BF9 HA1  H17 H 0 1 N N N Y N N 10.760 -9.544  76.674 4.601  -1.456 0.872  H17 BF9 42 
BF9 H18  H18 H 0 1 N N N N N N 10.501 -11.800 75.718 2.615  -2.805 -1.014 H18 BF9 43 
BF9 H19  H19 H 0 1 N N N N N N 8.270  -12.671 75.168 3.641  -4.359 0.623  H19 BF9 44 
BF9 H20  H20 H 0 1 N N N N N N 7.576  -11.024 75.353 4.274  -4.648 -1.016 H20 BF9 45 
BF9 H21  H21 H 0 1 N N N N N N 8.753  -11.361 74.038 5.258  -3.764 0.175  H21 BF9 46 
BF9 H2   H22 H 0 1 N Y N Y Y N 8.451  -9.147  77.174 1.830  -2.372 1.292  H22 BF9 47 
BF9 H    H23 H 0 1 N N N Y Y N 9.099  -7.918  76.316 3.196  -3.034 1.972  H23 BF9 48 
BF9 H26  H26 H 0 1 N N N N N N 9.889  -11.347 77.943 5.335  -1.894 -1.464 H26 BF9 49 
BF9 OXT  OXT O 0 1 N Y N Y N Y 13.484 -8.747  76.157 7.034  1.488  1.011  O1  BF9 50 
BF9 HXT  HXT H 0 1 N Y N Y N Y 14.252 -8.835  76.709 7.338  1.822  1.866  H11 BF9 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BF9 O08 C07  DOUB N N 1  
BF9 C07 C06  SING N N 2  
BF9 C07 CZ   SING N N 3  
BF9 C01 C02  DOUB Y N 4  
BF9 C01 C06  SING Y N 5  
BF9 CE1 CZ   DOUB Y N 6  
BF9 CE1 CD1  SING Y N 7  
BF9 C02 C03  SING Y N 8  
BF9 C06 C05  DOUB Y N 9  
BF9 CZ  CE2  SING Y N 10 
BF9 CD1 CG2  DOUB Y N 11 
BF9 C03 C04  DOUB Y N 12 
BF9 C05 C04  SING Y N 13 
BF9 CE2 CD2  DOUB Y N 14 
BF9 CG2 CD2  SING Y N 15 
BF9 CG2 CB2  SING N N 16 
BF9 CB2 CA2  DOUB N Z 17 
BF9 CA2 C2   SING N N 18 
BF9 CA2 N2   SING N N 19 
BF9 O2  C2   DOUB N N 20 
BF9 C2  N3   SING N N 21 
BF9 N2  C1   DOUB N N 22 
BF9 N3  C1   SING N N 23 
BF9 N3  CA3  SING N N 24 
BF9 C1  CA1  SING N N 25 
BF9 CG1 CB1  SING N N 26 
BF9 CA3 C3   SING N N 27 
BF9 CA1 CB1  SING N N 28 
BF9 CA1 N1   SING N N 29 
BF9 CB1 OG1  SING N N 30 
BF9 C3  O3   DOUB N N 31 
BF9 C01 H1   SING N N 32 
BF9 C02 H22  SING N N 33 
BF9 C03 H3   SING N N 34 
BF9 C04 H4   SING N N 35 
BF9 C05 H5   SING N N 36 
BF9 CE2 H6   SING N N 37 
BF9 CD2 H7   SING N N 38 
BF9 CD1 H8   SING N N 39 
BF9 CE1 H9   SING N N 40 
BF9 CB2 H10  SING N N 41 
BF9 CA3 HA31 SING N N 42 
BF9 CA3 HA32 SING N N 43 
BF9 CA1 HA1  SING N N 44 
BF9 CB1 H18  SING N N 45 
BF9 CG1 H19  SING N N 46 
BF9 CG1 H20  SING N N 47 
BF9 CG1 H21  SING N N 48 
BF9 N1  H2   SING N N 49 
BF9 N1  H    SING N N 50 
BF9 OG1 H26  SING N N 51 
BF9 C3  OXT  SING N N 52 
BF9 OXT HXT  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BF9 SMILES           ACDLabs              12.01 "c1ccccc1C(c3ccc(\C=C2\C(N(C(C(C(O)C)N)=N2)CC(=O)O)=O)cc3)=O"                                                                                                                 
BF9 InChI            InChI                1.03  "InChI=1S/C22H21N3O5/c1-13(26)19(23)21-24-17(22(30)25(21)12-18(27)28)11-14-7-9-16(10-8-14)20(29)15-5-3-2-4-6-15/h2-11,13,19,26H,12,23H2,1H3,(H,27,28)/b17-11-/t13-,19-/m0/s1" 
BF9 InChIKey         InChI                1.03  QQKMSEAMLFRSCX-GBQBQLPHSA-N                                                                                                                                                   
BF9 SMILES_CANONICAL CACTVS               3.385 "C[C@H](O)[C@H](N)C1=NC(=C/c2ccc(cc2)C(=O)c3ccccc3)\C(=O)N1CC(O)=O"                                                                                                           
BF9 SMILES           CACTVS               3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(cc2)C(=O)c3ccccc3)C(=O)N1CC(O)=O"                                                                                                               
BF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]([C@@H](C1=N/C(=C\c2ccc(cc2)C(=O)c3ccccc3)/C(=O)N1CC(=O)O)N)O"                                                                                                        
BF9 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C(C1=NC(=Cc2ccc(cc2)C(=O)c3ccccc3)C(=O)N1CC(=O)O)N)O"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BF9 "SYSTEMATIC NAME" ACDLabs              12.01 "[(4Z)-2-[(1R,2S)-1-amino-2-hydroxypropyl]-4-{[4-(benzenecarbonyl)phenyl]methylidene}-5-oxo-4,5-dihydro-1H-imidazol-1-yl]acetic acid"          
BF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(4~{Z})-2-[(1~{R},2~{S})-1-azanyl-2-oxidanyl-propyl]-5-oxidanylidene-4-[[4-(phenylcarbonyl)phenyl]methylidene]imidazol-1-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BF9 "Create component" 2018-12-19 PDBJ 
BF9 "Initial release"  2019-01-30 RCSB 
BF9 "Modify synonyms"  2021-03-01 PDBE 
BF9 "Modify backbone"  2023-11-03 PDBE 
BF9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      BF9 
_pdbx_chem_comp_synonyms.name         "PEPTIDE DERIVED CHROMOPHORE" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            BF9 
_pdbx_chem_comp_pcm.modified_residue_id                "THR, PHE, GLY" 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Chromophore/chromophore-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
