data_AI9
# 
_chem_comp.id                                    AI9 
_chem_comp.name                                  "[(2R,3S,4S,5E)-5-[[5-azanyl-2,4-bis(oxidanylidene)-1H-pyrimidin-6-yl]imino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H15 N4 O9 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-10-05 
_chem_comp.pdbx_modified_date                    2013-02-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        354.211 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     AI9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4G3M 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
AI9 O4    O4    O 0 1 N N N 53.665 50.740 49.575 -6.873 -1.204 1.084  O4    AI9 1  
AI9 N3    N3    N 0 1 N N N 54.197 48.453 49.534 -6.231 0.837  0.474  N3    AI9 2  
AI9 N5    N5    N 0 1 N N N 51.264 50.179 48.195 -4.438 -2.366 0.553  N5    AI9 3  
AI9 O2    O2    O 0 1 N N N 54.738 46.184 49.502 -5.517 2.832  -0.161 O2    AI9 4  
AI9 N1    N1    N 0 1 N N N 52.742 46.882 48.520 -4.043 1.189  -0.293 N1    AI9 5  
AI9 C6    C6    C 0 1 N N N 51.853 47.867 48.181 -3.739 -0.149 -0.116 C6    AI9 6  
AI9 C5    C5    C 0 1 N N N 52.147 49.224 48.534 -4.713 -1.003 0.361  C5    AI9 7  
AI9 C4    C4    C 0 1 N N N 53.349 49.500 49.224 -5.993 -0.476 0.660  C4    AI9 8  
AI9 P     P     P 0 1 N N N 53.320 43.971 41.303 5.986  0.186  0.449  P     AI9 9  
AI9 O1P   O1P   O 0 1 N N N 52.689 44.818 40.056 5.934  -0.258 1.860  O1P   AI9 10 
AI9 O2P   O2P   O 0 1 N N N 53.281 42.372 40.871 6.195  1.781  0.395  O2P   AI9 11 
AI9 O3P   O3P   O 0 1 N N N 54.904 44.397 41.520 7.212  -0.542 -0.298 O3P   AI9 12 
AI9 "C5'" "C5'" C 0 1 N N N 51.780 45.282 42.965 3.325  0.205  0.203  "C5'" AI9 13 
AI9 "O5'" "O5'" O 0 1 N N N 52.549 44.118 42.734 4.606  -0.199 -0.285 "O5'" AI9 14 
AI9 "C4'" "C4'" C 0 1 N N R 51.082 45.168 44.359 2.233  -0.327 -0.727 "C4'" AI9 15 
AI9 "O4'" "O4'" O 0 1 N N N 52.172 45.058 45.310 2.222  -1.755 -0.680 "O4'" AI9 16 
AI9 "C3'" "C3'" C 0 1 N N S 50.186 46.401 44.633 0.873  0.209  -0.276 "C3'" AI9 17 
AI9 "O3'" "O3'" O 0 1 N N N 49.169 46.365 43.608 0.884  1.637  -0.323 "O3'" AI9 18 
AI9 "C2'" "C2'" C 0 1 N N S 49.410 46.395 45.961 -0.219 -0.324 -1.206 "C2'" AI9 19 
AI9 "O2'" "O2'" O 0 1 N N N 48.565 45.263 46.088 -0.230 -1.752 -1.159 "O2'" AI9 20 
AI9 "C1'" "C1'" C 0 1 N N N 50.281 46.487 47.176 -1.559 0.204  -0.762 "C1'" AI9 21 
AI9 "N1'" "N1'" N 0 1 N N N 50.712 47.629 47.534 -2.497 -0.619 -0.415 "N1'" AI9 22 
AI9 C2    C2    C 0 1 N N N 53.899 47.165 49.187 -5.271 1.652  0.002  C2    AI9 23 
AI9 H1    H1    H 0 1 N N N 55.048 48.642 50.023 -7.108 1.199  0.678  H1    AI9 24 
AI9 H2    H2    H 0 1 N N N 51.600 51.069 48.504 -3.582 -2.731 0.281  H2    AI9 25 
AI9 H3    H3    H 0 1 N N N 51.152 50.191 47.201 -5.105 -2.943 0.957  H3    AI9 26 
AI9 H6    H6    H 0 1 N N N 52.906 42.287 40.002 6.238  2.143  -0.501 H6    AI9 27 
AI9 H7    H7    H 0 1 N N N 55.147 45.054 40.878 8.077  -0.354 0.092  H7    AI9 28 
AI9 H8    H8    H 0 1 N N N 52.436 46.165 42.953 3.175  -0.196 1.206  H8    AI9 29 
AI9 H9    H9    H 0 1 N N N 51.017 45.381 42.179 3.276  1.294  0.236  H9    AI9 30 
AI9 H10   H10   H 0 1 N N N 50.462 44.260 44.376 2.433  0.001  -1.747 H10   AI9 31 
AI9 H11   H11   H 0 1 N N N 51.820 44.984 46.189 2.049  -2.118 0.199  H11   AI9 32 
AI9 H12   H12   H 0 1 N N N 50.789 47.318 44.560 0.673  -0.120 0.744  H12   AI9 33 
AI9 H13   H13   H 0 1 N N N 48.580 47.102 43.720 1.056  2.000  -1.202 H13   AI9 34 
AI9 H14   H14   H 0 1 N N N 48.774 47.292 45.954 -0.019 0.005  -2.226 H14   AI9 35 
AI9 H15   H15   H 0 1 N N N 48.107 45.301 46.920 -0.403 -2.115 -0.280 H15   AI9 36 
AI9 H16   H16   H 0 1 N N N 50.538 45.601 47.737 -1.737 1.269  -0.733 H16   AI9 37 
AI9 H4    H4    H 0 1 N N N 52.539 45.934 48.273 -3.367 1.796  -0.632 H4    AI9 38 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
AI9 O1P   P     DOUB N N 1  
AI9 O2P   P     SING N N 2  
AI9 P     O3P   SING N N 3  
AI9 P     "O5'" SING N N 4  
AI9 "O5'" "C5'" SING N N 5  
AI9 "C5'" "C4'" SING N N 6  
AI9 "O3'" "C3'" SING N N 7  
AI9 "C4'" "C3'" SING N N 8  
AI9 "C4'" "O4'" SING N N 9  
AI9 "C3'" "C2'" SING N N 10 
AI9 "C2'" "O2'" SING N N 11 
AI9 "C2'" "C1'" SING N N 12 
AI9 "C1'" "N1'" DOUB N N 13 
AI9 "N1'" C6    SING N N 14 
AI9 C6    N1    SING N N 15 
AI9 C6    C5    DOUB N N 16 
AI9 N5    C5    SING N N 17 
AI9 N1    C2    SING N N 18 
AI9 C5    C4    SING N N 19 
AI9 C2    O2    DOUB N N 20 
AI9 C2    N3    SING N N 21 
AI9 C4    N3    SING N N 22 
AI9 C4    O4    DOUB N N 23 
AI9 N3    H1    SING N N 24 
AI9 N5    H2    SING N N 25 
AI9 N5    H3    SING N N 26 
AI9 O2P   H6    SING N N 27 
AI9 O3P   H7    SING N N 28 
AI9 "C5'" H8    SING N N 29 
AI9 "C5'" H9    SING N N 30 
AI9 "C4'" H10   SING N N 31 
AI9 "O4'" H11   SING N N 32 
AI9 "C3'" H12   SING N N 33 
AI9 "O3'" H13   SING N N 34 
AI9 "C2'" H14   SING N N 35 
AI9 "O2'" H15   SING N N 36 
AI9 "C1'" H16   SING N N 37 
AI9 N1    H4    SING N N 38 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
AI9 SMILES           ACDLabs              12.01 "O=C1NC(/N=C/C(O)C(O)C(O)COP(=O)(O)O)=C(C(=O)N1)N"                                                                                                               
AI9 InChI            InChI                1.03  "InChI=1S/C9H15N4O9P/c10-5-7(12-9(18)13-8(5)17)11-1-3(14)6(16)4(15)2-22-23(19,20)21/h1,3-4,6,14-16H,2,10H2,(H2,19,20,21)(H2,12,13,17,18)/b11-1+/t3-,4+,6-/m0/s1" 
AI9 InChIKey         InChI                1.03  XKTZRTIKRCUGRX-ODDLNGBBSA-N                                                                                                                                      
AI9 SMILES_CANONICAL CACTVS               3.370 "NC1=C(NC(=O)NC1=O)N=C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O"                                                                                                     
AI9 SMILES           CACTVS               3.370 "NC1=C(NC(=O)NC1=O)N=C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O"                                                                                                        
AI9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C([C@H]([C@H]([C@H](/C=N/C1=C(C(=O)NC(=O)N1)N)O)O)O)OP(=O)(O)O"                                                                                                 
AI9 SMILES           "OpenEye OEToolkits" 1.7.6 "C(C(C(C(C=NC1=C(C(=O)NC(=O)N1)N)O)O)O)OP(=O)(O)O"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
AI9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3S,4S,5E)-5-[(5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)imino]-2,3,4-trihydroxypentyl dihydrogen phosphate (non-preferred name)" 
AI9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4S,5E)-5-[[5-azanyl-2,4-bis(oxidanylidene)-1H-pyrimidin-6-yl]imino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate"                 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
AI9 "Create component" 2012-10-05 PDBJ 
AI9 "Initial release"  2013-02-15 RCSB 
# 
