data_A99
# 
_chem_comp.id                                    A99 
_chem_comp.name                                  "5'-O-[(S)-hydroxy{[(R)-hydroxy({(S)-hydroxy[(1S)-1-(2-nitrophenyl)ethoxy]phosphoryl}oxy)phosphoryl]oxy}phosphoryl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H23 N6 O15 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-05-19 
_chem_comp.pdbx_modified_date                    2012-05-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        656.328 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A99 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YJ5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A99 "C'"   "C'"   C 0  1 N N S 30.927 -11.196 -31.002 6.447   -1.304 -0.952 "C'"   A99 1  
A99 N1     N1     N 0  1 Y N N 29.215 -7.104  -39.940 -9.776  -2.483 -1.581 N1     A99 2  
A99 C2     C2     C 0  1 Y N N 28.221 -6.438  -39.324 -9.465  -1.390 -2.253 C2     A99 3  
A99 N3     N3     N 0  1 Y N N 28.413 -5.631  -38.259 -8.406  -0.662 -1.966 N3     A99 4  
A99 C4     C4     C 0  1 Y N N 29.649 -5.425  -37.742 -7.595  -1.008 -0.971 C4     A99 5  
A99 C5     C5     C 0  1 Y N N 30.790 -6.127  -38.360 -7.883  -2.164 -0.226 C5     A99 6  
A99 C6     C6     C 0  1 Y N N 30.508 -7.006  -39.538 -9.025  -2.908 -0.570 C6     A99 7  
A99 N6     N6     N 0  1 N N N 31.480 -7.690  -40.205 -9.359  -4.055 0.128  N6     A99 8  
A99 N7     N7     N 0  1 Y N N 31.871 -5.746  -37.649 -6.914  -2.286 0.712  N7     A99 9  
A99 C8     C8     C 0  1 Y N N 31.461 -4.893  -36.665 -6.070  -1.302 0.593  C8     A99 10 
A99 N9     N9     N 0  1 Y N N 30.130 -4.707  -36.716 -6.447  -0.486 -0.431 N9     A99 11 
A99 PA     PA     P 0  1 N N N 33.518 -4.735  -33.021 -0.539  1.633  1.560  PA     A99 12 
A99 PB     PB     P 0  1 N N N 33.058 -6.717  -31.120 1.814   -0.153 1.801  PB     A99 13 
A99 PG     PG     P 0  1 N N N 31.067 -8.544  -30.450 4.396   -1.166 0.756  PG     A99 14 
A99 "O'L"  "O'L"  O -1 1 N N N 32.105 -12.492 -27.741 10.474  -0.769 -0.476 "O'L"  A99 15 
A99 "O'M"  "O'M"  O 0  1 N N N 32.072 -14.133 -29.058 8.769   -2.006 -0.359 "O'M"  A99 16 
A99 "C1'"  "C1'"  C 0  1 Y N N 29.123 -13.341 -28.288 9.099   1.229  -1.848 "C1'"  A99 17 
A99 O1A    O1A    O 0  1 N N N 34.070 -3.954  -31.849 -1.012  1.254  2.910  O1A    A99 18 
A99 C1B    C1B    C 0  1 N N R 29.308 -3.833  -35.823 -5.752  0.725  -0.876 C1B    A99 19 
A99 O1B    O1B    O 0  1 N N N 34.555 -6.954  -31.099 2.480   0.790  2.727  O1B    A99 20 
A99 O1G    O1G    O 0  1 N N N 29.991 -7.479  -30.570 4.427   -2.707 1.219  O1G    A99 21 
A99 "C2'"  "C2'"  C 0  1 Y N N 30.200 -12.795 -28.984 8.484   0.092  -1.358 "C2'"  A99 22 
A99 "N2'"  "N2'"  N 1  1 N N N 31.508 -13.159 -28.579 9.290   -0.956 -0.692 "N2'"  A99 23 
A99 "O2'"  "O2'"  O 0  1 N N N 27.354 -3.984  -34.498 -7.484  2.462  -0.969 "O2'"  A99 24 
A99 O2A    O2A    O 0  1 N N N 34.434 -5.290  -34.096 0.088   3.115  1.607  O2A    A99 25 
A99 C2B    C2B    C 0  1 N N R 28.576 -4.670  -34.800 -6.371  1.982  -0.213 C2B    A99 26 
A99 O2B    O2B    O 0  1 N N N 32.353 -5.986  -29.993 1.261   -1.418 2.628  O2B    A99 27 
A99 O2G    O2G    O 0  1 N N N 30.505 -9.846  -31.224 5.067   -1.029 -0.701 O2G    A99 28 
A99 "C3'"  "C3'"  C 0  1 Y N N 29.904 -11.859 -30.127 7.117   -0.065 -1.487 "C3'"  A99 29 
A99 "O3'"  "O3'"  O 0  1 N N N 28.930 -5.053  -32.406 -5.330  3.860  -1.386 "O3'"  A99 30 
A99 O3A    O3A    O 0  1 N N N 32.660 -5.975  -32.486 0.586   0.590  1.072  O3A    A99 31 
A99 C3B    C3B    C 0  1 N N S 29.550 -4.692  -33.641 -5.194  2.987  -0.263 C3B    A99 32 
A99 O3B    O3B    O 0  1 N N N 32.305 -8.111  -31.385 2.871   -0.654 0.695  O3B    A99 33 
A99 O3G    O3G    O 0  1 N N N 31.624 -8.921  -29.093 5.153   -0.344 1.727  O3G    A99 34 
A99 "C4'"  "C4'"  C 0  1 Y N N 28.571 -11.585 -30.429 6.364   0.914  -2.109 "C4'"  A99 35 
A99 "O4'"  "O4'"  O 0  1 N N N 30.126 -2.924  -35.063 -4.388  0.731  -0.403 "O4'"  A99 36 
A99 C4B    C4B    C 0  1 N N R 30.068 -3.266  -33.665 -3.945  2.099  -0.419 C4B    A99 37 
A99 "C5'"  "C5'"  C 0  1 Y N N 27.539 -12.157 -29.690 6.979   2.050  -2.601 "C5'"  A99 38 
A99 "O5'"  "O5'"  O 0  1 N N N 32.358 -3.875  -33.745 -1.778  1.607  0.531  "O5'"  A99 39 
A99 C5B    C5B    C 0  1 N N N 31.426 -3.104  -32.996 -2.982  2.347  0.744  C5B    A99 40 
A99 "C6'"  "C6'"  C 0  1 Y N N 27.810 -13.025 -28.635 8.346   2.208  -2.470 "C6'"  A99 41 
A99 "CM'"  "CM'"  C 0  1 N N N 32.379 -11.251 -30.520 6.563   -2.432 -1.979 "CM'"  A99 42 
A99 "H'"   "H'"   H 0  1 N N N 30.962 -11.779 -31.934 6.931   -1.607 -0.023 "H'"   A99 43 
A99 H2     H2     H 0  1 N N N 27.216 -6.555  -39.702 -10.102 -1.081 -3.068 H2     A99 44 
A99 HN6    HN6    H 0  1 N N N 31.069 -8.208  -40.955 -10.150 -4.559 -0.119 HN6    A99 45 
A99 HN6A   HN6A   H 0  0 N N N 32.149 -7.044  -40.573 -8.803  -4.354 0.864  HN6A   A99 46 
A99 H8     H8     H 0  1 N N N 32.117 -4.430  -35.943 -5.199  -1.154 1.215  H8     A99 47 
A99 "H1'"  "H1'"  H 0  1 N N N 29.308 -14.019 -27.468 10.166  1.354  -1.742 "H1'"  A99 48 
A99 H1B    H1B    H 0  1 N N N 28.621 -3.283  -36.483 -5.785  0.808  -1.962 H1B    A99 49 
A99 "HO2'" "HO2'" H 0  0 N N N 26.862 -4.481  -33.855 -7.905  3.248  -0.595 "HO2'" A99 50 
A99 H2B    H2B    H 0  1 N N N 28.300 -5.692  -35.100 -6.663  1.776  0.817  H2B    A99 51 
A99 "HO3'" "HO3'" H 0  0 N N N 29.580 -5.052  -31.713 -6.131  4.402  -1.369 "HO3'" A99 52 
A99 H3B    H3B    H 0  1 N N N 30.344 -5.448  -33.731 -5.143  3.562  0.661  H3B    A99 53 
A99 "H4'"  "H4'"  H 0  1 N N N 28.336 -10.920 -31.247 5.296   0.790  -2.211 "H4'"  A99 54 
A99 H4B    H4B    H 0  1 N N N 29.408 -2.600  -33.089 -3.451  2.317  -1.366 H4B    A99 55 
A99 "H5'"  "H5'"  H 0  1 N N N 26.514 -11.924 -29.938 6.391   2.815  -3.087 "H5'"  A99 56 
A99 H5B    H5B    H 0  1 N N N 31.724 -2.045  -32.992 -2.749  3.410  0.802  H5B    A99 57 
A99 H5BA   H5BA   H 0  0 N N N 31.384 -3.462  -31.957 -3.446  2.025  1.676  H5BA   A99 58 
A99 "H6'"  "H6'"  H 0  1 N N N 26.992 -13.459 -28.078 8.826   3.096  -2.853 "H6'"  A99 59 
A99 "HM'"  "HM'"  H 0  1 N N N 32.673 -12.299 -30.359 6.079   -2.129 -2.907 "HM'"  A99 60 
A99 "HM'A" "HM'A" H 0  0 N N N 33.034 -10.799 -31.279 7.616   -2.642 -2.170 "HM'A" A99 61 
A99 "HM'B" "HM'B" H 0  0 N N N 32.473 -10.695 -29.576 6.079   -3.328 -1.591 "HM'B" A99 62 
A99 H2A    H2A    H 0  1 N N N 35.334 -5.064  -33.893 0.419   3.430  0.755  H2A    A99 63 
A99 HBB    HBB    H 0  1 N N N 32.988 -5.732  -29.334 0.812   -2.079 2.083  HBB    A99 64 
A99 H1G    H1G    H 0  1 N N N 29.776 -7.147  -29.706 3.949   -3.305 0.627  H1G    A99 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A99 "C'"  O2G    SING N N 1  
A99 "C'"  "C3'"  SING N N 2  
A99 "C'"  "CM'"  SING N N 3  
A99 N1    C2     DOUB Y N 4  
A99 N1    C6     SING Y N 5  
A99 C2    N3     SING Y N 6  
A99 N3    C4     DOUB Y N 7  
A99 C4    C5     SING Y N 8  
A99 C4    N9     SING Y N 9  
A99 C5    C6     DOUB Y N 10 
A99 C5    N7     SING Y N 11 
A99 C6    N6     SING N N 12 
A99 N7    C8     DOUB Y N 13 
A99 C8    N9     SING Y N 14 
A99 N9    C1B    SING N N 15 
A99 PA    O1A    DOUB N N 16 
A99 PA    O2A    SING N N 17 
A99 PA    O3A    SING N N 18 
A99 PA    "O5'"  SING N N 19 
A99 PB    O1B    DOUB N N 20 
A99 PB    O2B    SING N N 21 
A99 PB    O3A    SING N N 22 
A99 PB    O3B    SING N N 23 
A99 PG    O1G    SING N N 24 
A99 PG    O2G    SING N N 25 
A99 PG    O3B    SING N N 26 
A99 PG    O3G    DOUB N N 27 
A99 "O'L" "N2'"  SING N N 28 
A99 "O'M" "N2'"  DOUB N N 29 
A99 "C1'" "C2'"  DOUB Y N 30 
A99 "C1'" "C6'"  SING Y N 31 
A99 C1B   C2B    SING N N 32 
A99 C1B   "O4'"  SING N N 33 
A99 "C2'" "N2'"  SING N N 34 
A99 "C2'" "C3'"  SING Y N 35 
A99 "O2'" C2B    SING N N 36 
A99 C2B   C3B    SING N N 37 
A99 "C3'" "C4'"  DOUB Y N 38 
A99 "O3'" C3B    SING N N 39 
A99 C3B   C4B    SING N N 40 
A99 "C4'" "C5'"  SING Y N 41 
A99 "O4'" C4B    SING N N 42 
A99 C4B   C5B    SING N N 43 
A99 "C5'" "C6'"  DOUB Y N 44 
A99 "O5'" C5B    SING N N 45 
A99 "C'"  "H'"   SING N N 46 
A99 C2    H2     SING N N 47 
A99 N6    HN6    SING N N 48 
A99 N6    HN6A   SING N N 49 
A99 C8    H8     SING N N 50 
A99 "C1'" "H1'"  SING N N 51 
A99 C1B   H1B    SING N N 52 
A99 "O2'" "HO2'" SING N N 53 
A99 C2B   H2B    SING N N 54 
A99 "O3'" "HO3'" SING N N 55 
A99 C3B   H3B    SING N N 56 
A99 "C4'" "H4'"  SING N N 57 
A99 C4B   H4B    SING N N 58 
A99 "C5'" "H5'"  SING N N 59 
A99 C5B   H5B    SING N N 60 
A99 C5B   H5BA   SING N N 61 
A99 "C6'" "H6'"  SING N N 62 
A99 "CM'" "HM'"  SING N N 63 
A99 "CM'" "HM'A" SING N N 64 
A99 "CM'" "HM'B" SING N N 65 
A99 O2A   H2A    SING N N 66 
A99 O2B   HBB    SING N N 67 
A99 O1G   H1G    SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A99 SMILES           ACDLabs              12.01 "[O-][N+](=O)c1ccccc1C(OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC4OC(n3cnc2c(ncnc23)N)C(O)C4O)C" 
A99 SMILES_CANONICAL CACTVS               3.370 "C[C@H](O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)c4ccccc4[N+]([O-])=O" 
A99 SMILES           CACTVS               3.370 "C[CH](O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)c4ccccc4[N+]([O-])=O" 
A99 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@@H](c1ccccc1[N+](=O)[O-])OP(=O)(O)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 
A99 SMILES           "OpenEye OEToolkits" 1.7.2 "CC(c1ccccc1[N+](=O)[O-])OP(=O)(O)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" 
A99 InChI            InChI                1.03  
;InChI=1S/C18H23N6O15P3/c1-9(10-4-2-3-5-11(10)24(27)28)37-41(31,32)39-42(33,34)38-40(29,30)35-6-12-14(25)15(26)18(36-12)23-8-22-13-16(19)20-7-21-17(13)23/h2-5,7-9,12,14-15,18,25-26H,6H2,1H3,(H,29,30)(H,31,32)(H,33,34)(H2,19,20,21)/t9-,12+,14+,15+,18+/m0/s1
;
A99 InChIKey         InChI                1.03  UOLVQBSMMHANLG-YBGGAFRISA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A99 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-O-[(S)-hydroxy{[(R)-hydroxy({(S)-hydroxy[(1S)-1-(2-nitrophenyl)ethoxy]phosphoryl}oxy)phosphoryl]oxy}phosphoryl]adenosine"                                             
A99 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(1S)-1-(2-nitrophenyl)ethoxy]-oxidanyl-phosphoryl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A99 "Create component"     2011-05-19 EBI  
A99 "Modify aromatic_flag" 2011-06-04 RCSB 
A99 "Modify descriptor"    2011-06-04 RCSB 
# 
