data_A1D49
# 
_chem_comp.id                                    A1D49 
_chem_comp.name                                  "(5~{S})-1-(3~{H}-benzimidazol-5-yl)-5-(4-propoxyphenyl)imidazolidin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         PQ912 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-12-22 
_chem_comp.pdbx_modified_date                    2024-06-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.388 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1D49 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8XGB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1D49 C01  C1  C 0 1 N N N N N N -15.317 -4.188  41.616 7.486  1.964  -0.316 C01  A1D49 1  
A1D49 C02  C2  C 0 1 N N N N N N -14.200 -4.582  40.690 6.389  1.645  0.702  C02  A1D49 2  
A1D49 C03  C3  C 0 1 N N N N N N -14.571 -4.113  39.324 5.239  0.918  0.002  C03  A1D49 3  
A1D49 O04  O1  O 0 1 N N N N N N -13.410 -3.988  38.574 4.215  0.621  0.953  O04  A1D49 4  
A1D49 C05  C4  C 0 1 Y N N N N N -13.375 -4.638  37.366 3.114  -0.029 0.491  C05  A1D49 5  
A1D49 C06  C5  C 0 1 Y N N N N N -12.446 -5.589  37.174 2.081  -0.349 1.360  C06  A1D49 6  
A1D49 C07  C6  C 0 1 Y N N N N N -12.376 -6.285  36.019 0.963  -1.010 0.888  C07  A1D49 7  
A1D49 C08  C7  C 0 1 Y N N N N N -13.243 -6.016  35.016 0.874  -1.352 -0.449 C08  A1D49 8  
A1D49 C09  C8  C 0 1 Y N N N N N -14.219 -5.062  35.217 1.903  -1.035 -1.316 C09  A1D49 9  
A1D49 C10  C9  C 0 1 Y N N N N N -14.275 -4.364  36.397 3.020  -0.369 -0.851 C10  A1D49 10 
A1D49 C11  C10 C 0 1 N N S N N N -13.170 -6.849  33.726 -0.344 -2.079 -0.959 C11  A1D49 11 
A1D49 C12  C11 C 0 1 N N N N N N -13.965 -6.224  32.628 -0.296 -3.565 -0.555 C12  A1D49 12 
A1D49 N13  N1  N 0 1 N N N N N N -13.176 -6.266  31.453 -1.490 -3.740 0.286  N13  A1D49 13 
A1D49 C14  C12 C 0 1 N N N N N N -11.902 -6.836  31.849 -2.140 -2.572 0.375  C14  A1D49 14 
A1D49 O15  O2  O 0 1 N N N N N N -11.032 -6.986  31.111 -3.166 -2.432 1.012  O15  A1D49 15 
A1D49 N16  N2  N 0 1 N N N N N N -11.844 -7.162  33.258 -1.559 -1.571 -0.306 N16  A1D49 16 
A1D49 C17  C13 C 0 1 Y N N N N N -10.753 -7.865  33.931 -2.034 -0.256 -0.377 C17  A1D49 17 
A1D49 C18  C14 C 0 1 Y N N N N N -9.484  -7.412  34.204 -1.408 0.663  -1.217 C18  A1D49 18 
A1D49 C19  C15 C 0 1 Y N N N N N -8.565  -8.241  34.840 -1.858 1.950  -1.298 C19  A1D49 19 
A1D49 C20  C16 C 0 1 Y N N N N N -8.893  -9.571  35.236 -2.957 2.354  -0.536 C20  A1D49 20 
A1D49 N21  N3  N 0 1 Y N N N N N -8.215  -10.590 35.872 -3.621 3.533  -0.403 N21  A1D49 21 
A1D49 C22  C17 C 0 1 Y N N N N N -9.011  -11.618 35.973 -4.594 3.393  0.448  C22  A1D49 22 
A1D49 N23  N4  N 0 1 Y N N N N N -10.164 -11.315 35.443 -4.624 2.117  0.920  N23  A1D49 23 
A1D49 C24  C18 C 0 1 Y N N N N N -10.125 -10.036 34.978 -3.592 1.430  0.312  C24  A1D49 24 
A1D49 C25  C19 C 0 1 Y N N N N N -11.041 -9.166  34.316 -3.128 0.124  0.382  C25  A1D49 25 
A1D49 H011 H1  H 0 0 N N N N N N -15.080 -4.518  42.638 7.856  1.036  -0.754 H011 A1D49 26 
A1D49 H012 H2  H 0 0 N N N N N N -15.436 -3.095  41.602 7.079  2.599  -1.103 H012 A1D49 27 
A1D49 H013 H3  H 0 0 N N N N N N -16.252 -4.663  41.285 8.305  2.482  0.182  H013 A1D49 28 
A1D49 H022 H4  H 0 0 N N N N N N -14.077 -5.675  40.692 6.796  1.010  1.488  H022 A1D49 29 
A1D49 H021 H5  H 0 0 N N N N N N -13.261 -4.107  41.009 6.020  2.573  1.139  H021 A1D49 30 
A1D49 H032 H6  H 0 0 N N N N N N -15.077 -3.139  39.390 4.832  1.554  -0.784 H032 A1D49 31 
A1D49 H031 H7  H 0 0 N N N N N N -15.243 -4.844  38.850 5.609  -0.009 -0.436 H031 A1D49 32 
A1D49 H061 H8  H 0 0 N N N N N N -11.739 -5.802  37.962 2.150  -0.082 2.404  H061 A1D49 33 
A1D49 H071 H9  H 0 0 N N N N N N -11.629 -7.055  35.896 0.159  -1.260 1.564  H071 A1D49 34 
A1D49 H091 H10 H 0 0 N N N N N N -14.943 -4.863  34.441 1.831  -1.304 -2.360 H091 A1D49 35 
A1D49 H101 H11 H 0 0 N N N N N N -15.029 -3.606  36.549 3.823  -0.121 -1.529 H101 A1D49 36 
A1D49 H111 H12 H 0 0 N N N N N N -13.662 -7.805  33.958 -0.421 -1.979 -2.042 H111 A1D49 37 
A1D49 H121 H13 H 0 0 N N N N N N -14.203 -5.181  32.884 -0.353 -4.203 -1.437 H121 A1D49 38 
A1D49 H122 H14 H 0 0 N N N N N N -14.898 -6.785  32.474 0.609  -3.778 0.013  H122 A1D49 39 
A1D49 H131 H15 H 0 0 N N N N N N -13.442 -5.964  30.538 -1.762 -4.569 0.710  H131 A1D49 40 
A1D49 H181 H16 H 0 0 N N N N N N -9.199  -6.409  33.924 -0.558 0.355  -1.808 H181 A1D49 41 
A1D49 H191 H17 H 0 0 N N N N N N -7.572  -7.865  35.040 -1.365 2.654  -1.951 H191 A1D49 42 
A1D49 H221 H19 H 0 0 N N N N N N -8.757  -12.567 36.423 -5.279 4.176  0.738  H221 A1D49 43 
A1D49 H231 H20 H 0 0 N N N N N N -10.953 -11.927 35.387 -5.252 1.757  1.565  H231 A1D49 44 
A1D49 H251 H21 H 0 0 N N N N N N -12.028 -9.547  34.099 -3.615 -0.591 1.029  H251 A1D49 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1D49 O15 C14  DOUB N N 1  
A1D49 N13 C14  SING N N 2  
A1D49 N13 C12  SING N N 3  
A1D49 C14 N16  SING N N 4  
A1D49 C12 C11  SING N N 5  
A1D49 N16 C11  SING N N 6  
A1D49 N16 C17  SING N N 7  
A1D49 C11 C08  SING N N 8  
A1D49 C17 C18  DOUB Y N 9  
A1D49 C17 C25  SING Y N 10 
A1D49 C18 C19  SING Y N 11 
A1D49 C25 C24  DOUB Y N 12 
A1D49 C19 C20  DOUB Y N 13 
A1D49 C24 C20  SING Y N 14 
A1D49 C24 N23  SING Y N 15 
A1D49 C08 C09  DOUB Y N 16 
A1D49 C08 C07  SING Y N 17 
A1D49 C09 C10  SING Y N 18 
A1D49 C20 N21  SING Y N 19 
A1D49 N23 C22  SING Y N 20 
A1D49 N21 C22  DOUB Y N 21 
A1D49 C07 C06  DOUB Y N 22 
A1D49 C10 C05  DOUB Y N 23 
A1D49 C06 C05  SING Y N 24 
A1D49 C05 O04  SING N N 25 
A1D49 O04 C03  SING N N 26 
A1D49 C03 C02  SING N N 27 
A1D49 C02 C01  SING N N 28 
A1D49 C01 H011 SING N N 29 
A1D49 C01 H012 SING N N 30 
A1D49 C01 H013 SING N N 31 
A1D49 C02 H022 SING N N 32 
A1D49 C02 H021 SING N N 33 
A1D49 C03 H032 SING N N 34 
A1D49 C03 H031 SING N N 35 
A1D49 C06 H061 SING N N 36 
A1D49 C07 H071 SING N N 37 
A1D49 C09 H091 SING N N 38 
A1D49 C10 H101 SING N N 39 
A1D49 C11 H111 SING N N 40 
A1D49 C12 H121 SING N N 41 
A1D49 C12 H122 SING N N 42 
A1D49 N13 H131 SING N N 43 
A1D49 C18 H181 SING N N 44 
A1D49 C19 H191 SING N N 45 
A1D49 C22 H221 SING N N 46 
A1D49 N23 H231 SING N N 47 
A1D49 C25 H251 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1D49 InChI            InChI                1.06  "InChI=1S/C19H20N4O2/c1-2-9-25-15-6-3-13(4-7-15)18-11-20-19(24)23(18)14-5-8-16-17(10-14)22-12-21-16/h3-8,10,12,18H,2,9,11H2,1H3,(H,20,24)(H,21,22)/t18-/m1/s1" 
A1D49 InChIKey         InChI                1.06  XHIKZWOEFZENIX-GOSISDBHSA-N                                                                                                                                    
A1D49 SMILES_CANONICAL CACTVS               3.385 "CCCOc1ccc(cc1)[C@H]2CNC(=O)N2c3ccc4nc[nH]c4c3"                                                                                                                
A1D49 SMILES           CACTVS               3.385 "CCCOc1ccc(cc1)[CH]2CNC(=O)N2c3ccc4nc[nH]c4c3"                                                                                                                 
A1D49 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCOc1ccc(cc1)[C@H]2CNC(=O)N2c3ccc4c(c3)[nH]cn4"                                                                                                              
A1D49 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCOc1ccc(cc1)C2CNC(=O)N2c3ccc4c(c3)[nH]cn4"                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           A1D49 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(5~{S})-1-(3~{H}-benzimidazol-5-yl)-5-(4-propoxyphenyl)imidazolidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1D49 "Create component" 2023-12-22 PDBC 
A1D49 "Initial release"  2024-06-12 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      A1D49 
_pdbx_chem_comp_synonyms.name         PQ912 
_pdbx_chem_comp_synonyms.provenance   PUBCHEM 
_pdbx_chem_comp_synonyms.type         ? 
# 
