data_9U9
#

_chem_comp.id                                   9U9
_chem_comp.name                                 "N6-({[(1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-yl]methoxy}carbonyl)-L-lysine"
_chem_comp.type                                 "peptide linking"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C17 H26 N2 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-01
_chem_comp.pdbx_modified_date                   2019-04-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       322.399
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9U9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6AAQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9U9  C15   C1   C  0  1  N  N  N  265.253  47.764  139.667  265.253  47.764  139.667  C15   9U9   1  
9U9  C17   C2   C  0  1  N  N  N  265.460  50.105  140.893  265.460  50.105  140.893  C17   9U9   2  
9U9  C20   C3   C  0  1  N  N  N  265.836  51.634  138.358  265.836  51.634  138.358  C20   9U9   3  
9U9  C21   C4   C  0  1  N  N  N  266.688  49.609  138.181  266.688  49.609  138.181  C21   9U9   4  
9U9  C22   C5   C  0  1  N  N  R  265.430  48.836  138.561  265.430  48.836  138.561  C22   9U9   5  
9U9  C     C6   C  0  1  N  N  N  258.813  50.148  145.791  258.813  50.148  145.791  C     9U9   6  
9U9  CA    C7   C  0  1  N  N  S  260.128  49.348  145.785  260.128  49.348  145.785  CA    9U9   7  
9U9  CB    C8   C  0  1  N  N  N  259.962  47.841  145.479  259.962  47.841  145.479  CB    9U9   8  
9U9  CG    C9   C  0  1  N  N  N  259.973  47.500  143.973  259.973  47.500  143.973  CG    9U9   9  
9U9  CD    C10  C  0  1  N  N  N  261.285  46.842  143.567  261.285  46.842  143.567  CD    9U9  10  
9U9  CE    C11  C  0  1  N  N  N  261.882  47.464  142.302  261.882  47.464  142.302  CE    9U9  11  
9U9  C11   C12  C  0  1  N  N  N  264.222  46.602  142.338  264.222  46.602  142.338  C11   9U9  12  
9U9  C14   C13  C  0  1  N  N  N  266.096  47.354  140.874  266.096  47.354  140.874  C14   9U9  13  
9U9  C16   C14  C  0  1  N  N  S  264.714  49.202  139.872  264.714  49.202  139.872  C16   9U9  14  
9U9  C18   C15  C  0  1  N  N  N  265.129  51.601  140.751  265.129  51.601  140.751  C18   9U9  15  
9U9  C19   C16  C  0  1  N  N  N  265.472  51.875  139.455  265.472  51.875  139.455  C19   9U9  16  
9U9  C23   C17  C  0  1  N  N  N  266.317  50.858  137.349  266.317  50.858  137.349  C23   9U9  17  
9U9  N     N1   N  0  1  N  N  N  260.756  49.573  147.064  260.756  49.573  147.064  N     9U9  18  
9U9  NZ    N2   N  0  1  N  N  N  263.306  47.702  142.409  263.306  47.702  142.409  NZ    9U9  19  
9U9  OXT   O1   O  0  1  N  Y  N  258.767  51.330  146.482  258.767  51.330  146.482  OXT   9U9  20  
9U9  O     O2   O  0  1  N  N  N  257.713  49.708  145.106  257.713  49.708  145.106  O     9U9  21  
9U9  O12   O3   O  0  1  N  N  N  263.708  45.519  142.528  263.708  45.519  142.528  O12   9U9  22  
9U9  O13   O4   O  0  1  N  N  N  265.630  46.718  142.075  265.630  46.718  142.075  O13   9U9  23  
9U9  H15   H1   H  0  1  N  N  N  264.457  47.042  139.434  264.457  47.042  139.434  H15   9U9  24  
9U9  H171  H2   H  0  0  N  N  N  265.184  49.783  141.908  265.185  49.783  141.908  H171  9U9  25  
9U9  H172  H3   H  0  0  N  N  N  266.542  49.973  140.748  266.542  49.973  140.748  H172  9U9  26  
9U9  H211  H4   H  0  0  N  N  N  267.348  48.960  137.587  267.348  48.960  137.587  H211  9U9  27  
9U9  H212  H5   H  0  0  N  N  N  267.211  49.924  139.096  267.211  49.924  139.096  H212  9U9  28  
9U9  H22   H6   H  0  1  N  N  N  264.737  48.696  137.718  264.737  48.696  137.718  H22   9U9  29  
9U9  HA    H7   H  0  1  N  N  N  260.769  49.774  144.999  260.769  49.774  144.999  HA    9U9  30  
9U9  HB2   H8   H  0  1  N  N  N  259.004  47.506  145.902  259.004  47.506  145.902  HB2   9U9  31  
9U9  HB3   H9   H  0  1  N  N  N  260.787  47.297  145.963  260.787  47.297  145.963  HB3   9U9  32  
9U9  HG2   H10  H  0  1  N  N  N  259.842  48.426  143.394  259.842  48.426  143.394  HG2   9U9  33  
9U9  HG3   H11  H  0  1  N  N  N  259.144  46.811  143.755  259.144  46.811  143.755  HG3   9U9  34  
9U9  HD2   H12  H  0  1  N  N  N  261.102  45.773  143.383  261.102  45.773  143.383  HD2   9U9  35  
9U9  HD3   H13  H  0  1  N  N  N  262.006  46.954  144.390  262.006  46.954  144.390  HD3   9U9  36  
9U9  HE2   H14  H  0  1  N  N  N  261.379  48.424  142.112  261.379  48.424  142.112  HE2   9U9  37  
9U9  HE3   H15  H  0  1  N  N  N  261.703  46.782  141.457  261.703  46.782  141.458  HE3   9U9  38  
9U9  H141  H16  H  0  0  N  N  N  266.859  46.673  140.469  266.859  46.673  140.469  H141  9U9  39  
9U9  H142  H17  H  0  0  N  N  N  266.577  48.283  141.213  266.577  48.283  141.213  H142  9U9  40  
9U9  H16   H18  H  0  1  N  N  N  263.622  49.327  139.818  263.622  49.327  139.818  H16   9U9  41  
9U9  H181  H19  H  0  0  N  N  N  265.723  52.205  141.453  265.723  52.205  141.452  H181  9U9  42  
9U9  H182  H20  H  0  0  N  N  N  264.059  51.786  140.923  264.059  51.786  140.923  H182  9U9  43  
9U9  H231  H21  H  0  0  N  N  N  267.195  51.308  136.862  267.195  51.308  136.862  H231  9U9  44  
9U9  H232  H22  H  0  0  N  N  N  265.550  50.639  136.592  265.550  50.639  136.592  H232  9U9  45  
9U9  H     H23  H  0  1  N  N  N  260.845  50.556  147.224  260.845  50.556  147.224  H     9U9  46  
9U9  H2    H24  H  0  1  N  Y  N  260.196  49.167  147.786  260.196  49.167  147.786  H2    9U9  47  
9U9  HZ    H26  H  0  1  N  N  N  263.650  48.633  142.532  263.650  48.633  142.532  HZ    9U9  48  
9U9  HXT   H27  H  0  1  N  Y  N  257.906  51.720  146.386  257.906  51.720  146.386  HXT   9U9  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9U9  C23  C21   SING  N  N   1  
9U9  C23  C20   SING  N  N   2  
9U9  C21  C22   SING  N  N   3  
9U9  C20  C19   TRIP  N  N   4  
9U9  C22  C15   SING  N  N   5  
9U9  C22  C16   SING  N  N   6  
9U9  C19  C18   SING  N  N   7  
9U9  C15  C16   SING  N  N   8  
9U9  C15  C14   SING  N  N   9  
9U9  C16  C17   SING  N  N  10  
9U9  C18  C17   SING  N  N  11  
9U9  C14  O13   SING  N  N  12  
9U9  O13  C11   SING  N  N  13  
9U9  CE   NZ    SING  N  N  14  
9U9  CE   CD    SING  N  N  15  
9U9  C11  NZ    SING  N  N  16  
9U9  C11  O12   DOUB  N  N  17  
9U9  CD   CG    SING  N  N  18  
9U9  CG   CB    SING  N  N  19  
9U9  O    C     DOUB  N  N  20  
9U9  CB   CA    SING  N  N  21  
9U9  CA   C     SING  N  N  22  
9U9  CA   N     SING  N  N  23  
9U9  C    OXT   SING  N  N  24  
9U9  C15  H15   SING  N  N  25  
9U9  C17  H171  SING  N  N  26  
9U9  C17  H172  SING  N  N  27  
9U9  C21  H211  SING  N  N  28  
9U9  C21  H212  SING  N  N  29  
9U9  C22  H22   SING  N  N  30  
9U9  CA   HA    SING  N  N  31  
9U9  CB   HB2   SING  N  N  32  
9U9  CB   HB3   SING  N  N  33  
9U9  CG   HG2   SING  N  N  34  
9U9  CG   HG3   SING  N  N  35  
9U9  CD   HD2   SING  N  N  36  
9U9  CD   HD3   SING  N  N  37  
9U9  CE   HE2   SING  N  N  38  
9U9  CE   HE3   SING  N  N  39  
9U9  C14  H141  SING  N  N  40  
9U9  C14  H142  SING  N  N  41  
9U9  C16  H16   SING  N  N  42  
9U9  C18  H181  SING  N  N  43  
9U9  C18  H182  SING  N  N  44  
9U9  C23  H231  SING  N  N  45  
9U9  C23  H232  SING  N  N  46  
9U9  N    H     SING  N  N  47  
9U9  N    H2    SING  N  N  48  
9U9  NZ   HZ    SING  N  N  49  
9U9  OXT  HXT   SING  N  N  50  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9U9  SMILES            ACDLabs               12.01  "C1(C2CCC#CCCC12)COC(NCCCCC(C(O)=O)N)=O"  
9U9  InChI             InChI                 1.03   "InChI=1S/C17H26N2O4/c18-15(16(20)21)9-5-6-10-19-17(22)23-11-14-12-7-3-1-2-4-8-13(12)14/h12-15H,3-11,18H2,(H,19,22)(H,20,21)/t12-,13+,14-,15-/m0/s1"  
9U9  InChIKey          InChI                 1.03   QLDVOCPEKYLEOT-XGUBFFRZSA-N  
9U9  SMILES_CANONICAL  CACTVS                3.385  "N[C@@H](CCCCNC(=O)OCC1[C@H]2CCC#CCC[C@@H]12)C(O)=O"  
9U9  SMILES            CACTVS                3.385  "N[CH](CCCCNC(=O)OCC1[CH]2CCC#CCC[CH]12)C(O)=O"  
9U9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C1C[C@@H]2[C@@H](C2COC(=O)NCCCC[C@@H](C(=O)O)N)CCC#C1"  
9U9  SMILES            "OpenEye OEToolkits"  2.0.6  "C1CC2C(C2COC(=O)NCCCCC(C(=O)O)N)CCC#C1"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9U9  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~6~-({[(1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-yl]methoxy}carbonyl)-L-lysine"  
9U9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "(2~{S})-2-azanyl-6-[[(1~{S},8~{R})-9-bicyclo[6.1.0]non-4-ynyl]methoxycarbonylamino]hexanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9U9  "Create component"  2018-08-01  PDBJ  
9U9  "Initial release"   2019-04-17  RCSB  
##
