data_9L9
# 
_chem_comp.id                                    9L9 
_chem_comp.name                                  "(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N7 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-08-01 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.375 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9L9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4B4W 
_chem_comp.pdbx_subcomponent_list                "9LO GLU" 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9L9 N2A  N2A  N 0 1 N N N 7.282  8.658  60.361 7.867  2.102  -2.120 N2A  9LO 1  
9L9 N1   N1   N 0 1 N N N 5.225  9.701  60.723 6.850  1.765  -0.064 N1   9LO 2  
9L9 C2   C2   C 0 1 N N N 5.983  8.583  60.664 7.007  1.397  -1.317 C2   9LO 3  
9L9 N3   N3   N 0 1 N N N 5.437  7.373  60.910 6.333  0.334  -1.835 N3   9LO 4  
9L9 C4   C4   C 0 1 N N N 4.131  7.265  61.217 5.482  -0.372 -1.062 C4   9LO 5  
9L9 O4A  O4A  O 0 1 N N N 3.607  6.030  61.470 4.874  -1.328 -1.519 O4A  9LO 6  
9L9 N5A  N5A  N 0 1 N N N 2.037  8.253  61.597 4.429  -0.699 1.119  N5A  9LO 7  
9L9 C5   C5   C 0 1 N N N 3.331  8.412  61.303 5.309  0.011  0.276  C5   9LO 8  
9L9 C6   C6   C 0 1 N N N 3.912  9.650  61.030 6.021  1.105  0.754  C6   9LO 9  
9L9 N7   N7   N 0 1 N N N 3.182  10.765 61.089 5.874  1.510  2.069  N7   9LO 10 
9L9 O8A  O8A  O 0 1 N N N 2.310  7.956  63.840 2.726  -0.374 -0.269 O8A  9LO 11 
9L9 N9   N9   N 0 1 N N N 0.247  7.839  62.898 2.266  -1.401 1.646  N9   9LO 12 
9L9 C1B  C1B  C 0 1 Y N N -0.484 7.433  63.945 0.901  -1.419 1.359  C1B  9LO 13 
9L9 C2B  C2B  C 0 1 Y N N -1.852 7.718  63.966 0.124  -2.504 1.753  C2B  9LO 14 
9L9 C3B  C3B  C 0 1 Y N N -2.652 7.243  65.004 -1.223 -2.525 1.472  C3B  9LO 15 
9L9 C4B  C4B  C 0 1 Y N N -2.109 6.463  66.020 -1.810 -1.455 0.789  C4B  9LO 16 
9L9 C5B  C5B  C 0 1 Y N N -0.754 6.137  65.978 -1.026 -0.368 0.395  C5B  9LO 17 
9L9 C6B  C6B  C 0 1 Y N N 0.050  6.610  64.943 0.319  -0.350 0.685  C6B  9LO 18 
9L9 C7B  C7B  C 0 1 N N N -2.984 5.900  67.157 -3.254 -1.475 0.486  C7B  9LO 19 
9L9 O7B  O7B  O 0 1 N N N -2.575 4.951  67.832 -3.935 -2.422 0.829  O7B  9LO 20 
9L9 CAW  CAW  C 0 1 N N N 1.581  7.993  62.840 3.125  -0.809 0.794  CAW  9LO 21 
9L9 N    N    N 0 1 N N N -4.222 6.394  67.268 -3.818 -0.443 -0.172 N    GLU 22 
9L9 CA   CA   C 0 1 N N S -5.191 5.849  68.252 -5.252 -0.462 -0.474 CA   GLU 23 
9L9 C    C    C 0 1 N N N -6.047 4.750  67.576 -5.485 -1.219 -1.756 C    GLU 24 
9L9 OXT  OXT  O 0 1 N N N -6.472 3.829  68.307 -4.550 -1.694 -2.356 O    GLU 25 
9L9 CB   CB   C 0 1 N N N -6.108 6.961  68.779 -5.760 0.973  -0.629 CB   GLU 26 
9L9 CG   CG   C 0 1 N N N -5.431 7.694  69.936 -5.638 1.704  0.709  CG   GLU 27 
9L9 CD   CD   C 0 1 N N N -6.377 8.648  70.672 -6.138 3.118  0.556  CD   GLU 28 
9L9 OE1  OE1  O 0 1 N N N -5.858 9.681  71.161 -6.550 3.500  -0.513 OE1  GLU 29 
9L9 OE2  OE2  O 0 1 N N N -7.591 8.330  70.741 -6.126 3.951  1.608  OE2  GLU 30 
9L9 O    O    O 0 1 N N N -6.290 4.849  66.353 -6.732 -1.366 -2.231 OXT  GLU 31 
9L9 H2A1 H2A1 H 0 0 N N N 7.702  9.547  60.175 8.352  2.862  -1.762 H2A1 9LO 32 
9L9 H2A2 H2A2 H 0 0 N N N 7.835  7.826  60.320 7.993  1.838  -3.045 H2A2 9LO 33 
9L9 H71N H71N H 0 0 N N N 3.760  11.554 60.879 6.372  2.273  2.399  H71N 9LO 34 
9L9 H72N H72N H 0 0 N N N 2.437  10.711 60.424 5.273  1.030  2.659  H72N 9LO 35 
9L9 H9   H9   H 0 1 N N N -0.259 8.052  62.062 2.596  -1.814 2.459  H9   9LO 36 
9L9 H2B  H2B  H 0 1 N N N -2.291 8.308  63.175 0.578  -3.330 2.280  H2B  9LO 37 
9L9 H6B  H6B  H 0 1 N N N 1.095  6.339  64.911 0.925  0.492  0.385  H6B  9LO 38 
9L9 H3B  H3B  H 0 1 N N N -3.705 7.483  65.020 -1.826 -3.367 1.777  H3B  9LO 39 
9L9 H5B  H5B  H 0 1 N N N -0.326 5.516  66.751 -1.476 0.460  -0.132 H5B  9LO 40 
9L9 H5A  H5A  H 0 1 N N N 1.371  8.331  60.856 4.761  -1.108 1.934  H5A  9LO 41 
9L9 HN3  HN3  H 0 1 N N N 6.006  6.552  60.864 6.466  0.083  -2.763 HN3  9LO 42 
9L9 H    H    H 0 1 N N N -4.502 7.148  66.674 -3.275 0.313  -0.446 H    GLU 43 
9L9 HA   HA   H 0 1 N N N -4.647 5.404  69.098 -5.788 -0.951 0.339  HA   GLU 44 
9L9 HB1C HB1C H 0 0 N N N -7.052 6.519  69.131 -5.164 1.490  -1.382 HB2  GLU 45 
9L9 HB2C HB2C H 0 0 N N N -6.317 7.675  67.969 -6.804 0.956  -0.940 HB3  GLU 46 
9L9 HG1C HG1C H 0 0 N N N -5.057 6.948  70.653 -6.233 1.187  1.462  HG2  GLU 47 
9L9 HG2C HG2C H 0 0 N N N -4.587 8.275  69.537 -4.593 1.720  1.020  HG3  GLU 48 
9L9 HE2  HE2  H 0 1 N N N -8.066 8.995  71.225 -6.457 4.848  1.462  HE2  GLU 49 
9L9 HB   HB   H 0 1 N N N -6.839 4.124  66.079 -6.832 -1.859 -3.057 HXT  GLU 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9L9 N2A C2   SING N N 1  
9L9 N1  C2   DOUB N N 2  
9L9 N1  C6   SING N N 3  
9L9 C2  N3   SING N N 4  
9L9 N3  C4   SING N N 5  
9L9 C4  O4A  DOUB N N 6  
9L9 C4  C5   SING N N 7  
9L9 N5A C5   SING N N 8  
9L9 N5A CAW  SING N N 9  
9L9 C5  C6   DOUB N N 10 
9L9 C6  N7   SING N N 11 
9L9 O8A CAW  DOUB N N 12 
9L9 N9  C1B  SING N N 13 
9L9 N9  CAW  SING N N 14 
9L9 C1B C2B  SING Y N 15 
9L9 C1B C6B  DOUB Y N 16 
9L9 C2B C3B  DOUB Y N 17 
9L9 C3B C4B  SING Y N 18 
9L9 C4B C5B  DOUB Y N 19 
9L9 C4B C7B  SING N N 20 
9L9 C5B C6B  SING Y N 21 
9L9 C7B O7B  DOUB N N 22 
9L9 C7B N    SING N N 23 
9L9 N   CA   SING N N 24 
9L9 CB  CG   SING N N 25 
9L9 CB  CA   SING N N 26 
9L9 CG  CD   SING N N 27 
9L9 CD  OE1  DOUB N N 28 
9L9 CD  OE2  SING N N 29 
9L9 C   O    SING N N 30 
9L9 C   OXT  DOUB N N 31 
9L9 C   CA   SING N N 32 
9L9 N2A H2A1 SING N N 33 
9L9 N2A H2A2 SING N N 34 
9L9 N7  H71N SING N N 35 
9L9 N7  H72N SING N N 36 
9L9 N9  H9   SING N N 37 
9L9 C2B H2B  SING N N 38 
9L9 C6B H6B  SING N N 39 
9L9 C3B H3B  SING N N 40 
9L9 C5B H5B  SING N N 41 
9L9 N   H    SING N N 42 
9L9 CA  HA   SING N N 43 
9L9 CB  HB1C SING N N 44 
9L9 CB  HB2C SING N N 45 
9L9 CG  HG1C SING N N 46 
9L9 CG  HG2C SING N N 47 
9L9 OE2 HE2  SING N N 48 
9L9 O   HB   SING N N 49 
9L9 N5A H5A  SING N N 50 
9L9 N3  HN3  SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9L9 SMILES           ACDLabs              12.01 "O=C2C(NC(=O)Nc1ccc(C(=O)NC(C(=O)O)CCC(=O)O)cc1)=C(N=C(N)N2)N"                                                                                                                                      
9L9 InChI            InChI                1.03  "InChI=1S/C17H19N7O7/c18-12-11(14(28)24-16(19)23-12)22-17(31)20-8-3-1-7(2-4-8)13(27)21-9(15(29)30)5-6-10(25)26/h1-4,9H,5-6H2,(H,21,27)(H,25,26)(H,29,30)(H2,20,22,31)(H5,18,19,23,24,28)/t9-/m0/s1" 
9L9 InChIKey         InChI                1.03  WBQDVZMETQWVQD-VIFPVBQESA-N                                                                                                                                                                         
9L9 SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=C(NC(=O)Nc2ccc(cc2)C(=O)N[C@@H](CCC(O)=O)C(O)=O)C(=O)N1)N"                                                                                                                                 
9L9 SMILES           CACTVS               3.385 "NC1=NC(=C(NC(=O)Nc2ccc(cc2)C(=O)N[CH](CCC(O)=O)C(O)=O)C(=O)N1)N"                                                                                                                                   
9L9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NC(=O)NC2=C(N=C(NC2=O)N)N"                                                                                                                                   
9L9 SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NC(=O)NC2=C(N=C(NC2=O)N)N"                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9L9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-(4-{[(2,4-diamino-6-oxo-1,6-dihydropyrimidin-5-yl)carbamoyl]amino}benzoyl)-L-glutamic acid"                         
9L9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[4-[[2,4-bis(azanyl)-6-oxidanylidene-1H-pyrimidin-5-yl]carbamoylamino]phenyl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9L9 "Create component"   2012-08-01 EBI  
9L9 "Other modification" 2012-08-13 EBI  
9L9 "Modify descriptor"  2014-09-05 RCSB 
# 
