data_9G9
#

_chem_comp.id                                   9G9
_chem_comp.name                                 "5,5'-[(2R,3S)-2,3-dimethylbutane-1,4-diyl]bis(2H-1,3-benzodioxole)"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H22 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Machilin A"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-04-17
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.386
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9G9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5ZJF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9G9  O1   O1   O  0  1  N  N  N  25.456  -12.492  25.552   5.893   1.844  -0.440  O1   9G9   1  
9G9  O2   O2   O  0  1  N  N  N  34.697   -4.858  29.647  -5.978   1.794  -0.242  O2   9G9   2  
9G9  O3   O3   O  0  1  N  N  N  26.528  -13.941  23.954   7.018  -0.122  -0.412  O3   9G9   3  
9G9  O4   O4   O  0  1  N  N  N  35.924   -6.652  30.685  -7.035  -0.114   0.370  O4   9G9   4  
9G9  C5   C1   C  0  1  N  N  R  29.904   -9.023  26.211   0.734  -0.456  -0.160  C5   9G9   5  
9G9  C6   C2   C  0  1  N  N  S  31.135   -8.226  26.749  -0.741  -0.293   0.210  C6   9G9   6  
9G9  C7   C3   C  0  1  N  N  N  29.728  -10.404  26.882   1.600  -0.235   1.082  C7   9G9   7  
9G9  C8   C4   C  0  1  N  N  N  31.033   -7.856  28.248  -1.606  -0.515  -1.032  C8   9G9   8  
9G9  C9   C5   C  0  1  N  N  N  28.620   -8.186  26.338   0.972  -1.867  -0.701  C9   9G9   9  
9G9  C10  C6   C  0  1  N  N  N  31.422   -6.949  25.944  -0.978   1.118   0.752  C10  9G9  10  
9G9  C11  C7   C  0  1  Y  N  N  28.894  -11.372  26.074   3.055  -0.273   0.694  C11  9G9  11  
9G9  C12  C8   C  0  1  Y  N  N  32.355   -7.567  28.915  -3.062  -0.476  -0.644  C12  9G9  12  
9G9  C13  C9   C  0  1  Y  N  N  27.521  -11.406  26.269   3.701   0.891   0.320  C13  9G9  13  
9G9  C14  C10  C  0  1  Y  N  N  32.842   -6.267  28.918  -3.749   0.723  -0.662  C14  9G9  14  
9G9  C15  C11  C  0  1  Y  N  N  29.530  -12.206  25.151   3.742  -1.472   0.713  C15  9G9  15  
9G9  C16  C12  C  0  1  Y  N  N  33.055   -8.618  29.513  -3.707  -1.640  -0.268  C16  9G9  16  
9G9  C17  C13  C  0  1  Y  N  N  26.802  -12.305  25.508   5.038   0.858  -0.039  C17  9G9  17  
9G9  C18  C14  C  0  1  Y  N  N  34.055   -6.053  29.540  -5.087   0.761  -0.306  C18  9G9  18  
9G9  C19  C15  C  0  1  Y  N  N  27.414  -13.132  24.596   5.730  -0.351  -0.022  C19  9G9  19  
9G9  C20  C16  C  0  1  Y  N  N  34.755   -7.077  30.132  -5.738  -0.412   0.070  C20  9G9  20  
9G9  C21  C17  C  0  1  Y  N  N  28.780  -13.107  24.394   5.077  -1.514   0.354  C21  9G9  21  
9G9  C22  C18  C  0  1  Y  N  N  34.282   -8.373  30.136  -5.042  -1.610   0.087  C22  9G9  22  
9G9  C23  C19  C  0  1  N  N  N  25.289  -13.529  24.564   7.215   1.297  -0.274  C23  9G9  23  
9G9  C24  C20  C  0  1  N  N  N  35.880   -5.245  30.375  -7.067   1.312   0.568  C24  9G9  24  
9G9  H1   H1   H  0  1  N  N  N  30.076   -9.200  25.139   1.000   0.275  -0.923  H1   9G9  25  
9G9  H2   H2   H  0  1  N  N  N  32.011   -8.882  26.639  -1.007  -1.025   0.974  H2   9G9  26  
9G9  H3   H3   H  0  1  N  N  N  29.241  -10.256  27.857   1.366   0.736   1.519  H3   9G9  27  
9G9  H4   H4   H  0  1  N  N  N  30.724  -10.846  27.033   1.397  -1.019   1.811  H4   9G9  28  
9G9  H5   H5   H  0  1  N  N  N  30.400   -6.961  28.338  -1.403   0.270  -1.761  H5   9G9  29  
9G9  H6   H6   H  0  1  N  N  N  30.558   -8.695  28.777  -1.372  -1.486  -1.469  H6   9G9  30  
9G9  H7   H7   H  0  1  N  N  N  27.766   -8.763  25.955   0.355  -2.025  -1.587  H7   9G9  31  
9G9  H8   H8   H  0  1  N  N  N  28.448   -7.936  27.395   2.023  -1.983  -0.965  H8   9G9  32  
9G9  H9   H9   H  0  1  N  N  N  28.727   -7.259  25.755   0.706  -2.599   0.062  H9   9G9  33  
9G9  H10  H10  H  0  1  N  N  N  32.296   -6.435  26.370  -0.712   1.849  -0.011  H10  9G9  34  
9G9  H11  H11  H  0  1  N  N  N  31.628   -7.214  24.897  -2.029   1.234   1.016  H11  9G9  35  
9G9  H12  H12  H  0  1  N  N  N  30.547   -6.283  25.989  -0.362   1.276   1.637  H12  9G9  36  
9G9  H13  H13  H  0  1  N  N  N  27.036  -10.758  26.984   3.161   1.827   0.306  H13  9G9  37  
9G9  H14  H14  H  0  1  N  N  N  32.296   -5.459  28.454  -3.243   1.631  -0.956  H14  9G9  38  
9G9  H15  H15  H  0  1  N  N  N  30.601  -12.153  25.023   3.235  -2.380   1.005  H15  9G9  39  
9G9  H16  H16  H  0  1  N  N  N  32.649   -9.618  29.494  -3.167  -2.575  -0.255  H16  9G9  40  
9G9  H17  H17  H  0  1  N  N  N  29.251  -13.762  23.676   5.611  -2.452   0.369  H17  9G9  41  
9G9  H18  H18  H  0  1  N  N  N  34.840   -9.170  30.604  -5.544  -2.521   0.378  H18  9G9  42  
9G9  H19  H19  H  0  1  N  N  N  24.619  -13.155  23.776   7.883   1.669  -1.052  H19  9G9  43  
9G9  H20  H20  H  0  1  N  N  N  36.762   -4.994  29.767  -6.901   1.557   1.617  H20  9G9  44  
9G9  H21  H21  H  0  1  N  N  N  24.831  -14.403  25.050   7.607   1.536   0.715  H21  9G9  45  
9G9  H22  H22  H  0  1  N  N  N  35.911   -4.679  31.318  -8.014   1.726   0.222  H22  9G9  46  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9G9  O3   C23  SING  N  N   1  
9G9  O3   C19  SING  N  N   2  
9G9  C21  C19  DOUB  Y  N   3  
9G9  C21  C15  SING  Y  N   4  
9G9  C23  O1   SING  N  N   5  
9G9  C19  C17  SING  Y  N   6  
9G9  C15  C11  DOUB  Y  N   7  
9G9  C17  O1   SING  N  N   8  
9G9  C17  C13  DOUB  Y  N   9  
9G9  C10  C6   SING  N  N  10  
9G9  C11  C13  SING  Y  N  11  
9G9  C11  C7   SING  N  N  12  
9G9  C5   C9   SING  N  N  13  
9G9  C5   C6   SING  N  N  14  
9G9  C5   C7   SING  N  N  15  
9G9  C6   C8   SING  N  N  16  
9G9  C8   C12  SING  N  N  17  
9G9  C12  C14  DOUB  Y  N  18  
9G9  C12  C16  SING  Y  N  19  
9G9  C14  C18  SING  Y  N  20  
9G9  C16  C22  DOUB  Y  N  21  
9G9  C18  O2   SING  N  N  22  
9G9  C18  C20  DOUB  Y  N  23  
9G9  O2   C24  SING  N  N  24  
9G9  C20  C22  SING  Y  N  25  
9G9  C20  O4   SING  N  N  26  
9G9  C24  O4   SING  N  N  27  
9G9  C5   H1   SING  N  N  28  
9G9  C6   H2   SING  N  N  29  
9G9  C7   H3   SING  N  N  30  
9G9  C7   H4   SING  N  N  31  
9G9  C8   H5   SING  N  N  32  
9G9  C8   H6   SING  N  N  33  
9G9  C9   H7   SING  N  N  34  
9G9  C9   H8   SING  N  N  35  
9G9  C9   H9   SING  N  N  36  
9G9  C10  H10  SING  N  N  37  
9G9  C10  H11  SING  N  N  38  
9G9  C10  H12  SING  N  N  39  
9G9  C13  H13  SING  N  N  40  
9G9  C14  H14  SING  N  N  41  
9G9  C15  H15  SING  N  N  42  
9G9  C16  H16  SING  N  N  43  
9G9  C21  H17  SING  N  N  44  
9G9  C22  H18  SING  N  N  45  
9G9  C23  H19  SING  N  N  46  
9G9  C24  H20  SING  N  N  47  
9G9  C23  H21  SING  N  N  48  
9G9  C24  H22  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9G9  SMILES            ACDLabs               12.01  "O3c4cc(CC(C)C(Cc2cc1OCOc1cc2)C)ccc4OC3"  
9G9  InChI             InChI                 1.03   "InChI=1S/C20H22O4/c1-13(7-15-3-5-17-19(9-15)23-11-21-17)14(2)8-16-4-6-18-20(10-16)24-12-22-18/h3-6,9-10,13-14H,7-8,11-12H2,1-2H3/t13-,14+"  
9G9  InChIKey          InChI                 1.03   QEFJURUMSHPMTC-OKILXGFUSA-N  
9G9  SMILES_CANONICAL  CACTVS                3.385  "C[C@H](Cc1ccc2OCOc2c1)[C@@H](C)Cc3ccc4OCOc4c3"  
9G9  SMILES            CACTVS                3.385  "C[CH](Cc1ccc2OCOc2c1)[CH](C)Cc3ccc4OCOc4c3"  
9G9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@H](Cc1ccc2c(c1)OCO2)[C@@H](C)Cc3ccc4c(c3)OCO4"  
9G9  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(Cc1ccc2c(c1)OCO2)C(C)Cc3ccc4c(c3)OCO4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9G9  "SYSTEMATIC NAME"  ACDLabs               12.01  "5,5'-[(2R,3S)-2,3-dimethylbutane-1,4-diyl]bis(2H-1,3-benzodioxole)"  
9G9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "5-[(2~{R},3~{S})-4-(1,3-benzodioxol-5-yl)-2,3-dimethyl-butyl]-1,3-benzodioxole"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9G9  "Create component"  2018-04-17  PDBJ  
9G9  "Initial release"   2019-07-24  RCSB  
9G9  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9G9
_pdbx_chem_comp_synonyms.name        "Machilin A"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
