data_9D9
#

_chem_comp.id                                   9D9
_chem_comp.name                                 "[5-(2-amino-4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)-1,1-difluoropentyl]phosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H15 F2 N4 O4 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DFPP-DG
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-02-09
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       336.232
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9D9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3FUC
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9D9  O2P  O2P  O  0  1  N  N  N  32.386  -14.941  24.980  -5.070  -0.683  -1.841  O2P  9D9   1  
9D9  P    P    P  0  1  N  N  N  31.339  -14.099  24.170  -4.989   0.392  -0.645  P    9D9   2  
9D9  O3P  O3P  O  0  1  N  N  N  30.031  -13.864  25.068  -4.591   1.832  -1.244  O3P  9D9   3  
9D9  O1P  O1P  O  0  1  N  N  N  30.971  -14.699  22.846  -6.305   0.483   0.025  O1P  9D9   4  
9D9  C14  C14  C  0  1  N  N  N  31.984  -12.416  23.858  -3.728  -0.135   0.561  C14  9D9   5  
9D9  F1   F1   F  0  1  N  N  N  32.933  -12.497  22.886  -3.658   0.799   1.600  F1   9D9   6  
9D9  F2   F2   F  0  1  N  N  N  30.986  -11.646  23.410  -4.074  -1.386   1.081  F2   9D9   7  
9D9  C13  C13  C  0  1  N  N  N  32.610  -11.835  25.120  -2.367  -0.230  -0.132  C13  9D9   8  
9D9  C12  C12  C  0  1  N  N  N  32.794  -10.311  24.962  -1.309  -0.672   0.880  C12  9D9   9  
9D9  C11  C11  C  0  1  N  N  N  33.395   -9.685  26.227   0.052  -0.766   0.186  C11  9D9  10  
9D9  C10  C10  C  0  1  N  N  N  32.617  -10.111  27.492   1.111  -1.208   1.199  C10  9D9  11  
9D9  C9   C9   C  0  1  Y  N  N  33.052   -9.320  28.727   2.451  -1.302   0.516  C9   9D9  12  
9D9  C8   C8   C  0  1  Y  N  N  34.109   -9.559  29.530   2.996  -2.415  -0.013  C8   9D9  13  
9D9  N7   N7   N  0  1  Y  N  N  34.132   -8.625  30.503   4.213  -2.117  -0.545  N7   9D9  14  
9D9  C5   C5   C  0  1  Y  N  N  33.095   -7.755  30.358   4.462  -0.775  -0.355  C5   9D9  15  
9D9  C4   C4   C  0  1  Y  N  N  32.407   -8.199  29.229   3.355  -0.237   0.312  C4   9D9  16  
9D9  N3   N3   N  0  1  N  N  N  31.232   -7.564  28.714   3.338   1.075   0.620  N3   9D9  17  
9D9  C2   C2   C  0  1  N  N  N  30.853   -6.546  29.335   4.342   1.857   0.302  C2   9D9  18  
9D9  N2   N2   N  0  1  N  N  N  29.744   -5.842  29.017   4.284   3.188   0.634  N2   9D9  19  
9D9  N1   N1   N  0  1  N  N  N  31.485   -5.981  30.503   5.444   1.384  -0.350  N1   9D9  20  
9D9  C6   C6   C  0  1  N  N  N  32.657   -6.625  31.025   5.533   0.078  -0.684  C6   9D9  21  
9D9  O6   O6   O  0  1  N  N  N  33.195   -6.130  32.022   6.514  -0.351  -1.268  O6   9D9  22  
9D9  H1   H1   H  0  1  N  N  N  32.622  -15.716  24.484  -5.722  -0.467  -2.521  H1   9D9  23  
9D9  H2   H2   H  0  1  N  N  N  29.262  -14.151  24.590  -3.737   1.847  -1.699  H2   9D9  24  
9D9  H3   H3   H  0  1  N  N  N  31.953  -12.036  25.979  -2.422  -0.957  -0.942  H3   9D9  25  
9D9  H4   H4   H  0  1  N  N  N  33.590  -12.305  25.291  -2.097   0.746  -0.538  H4   9D9  26  
9D9  H5   H5   H  0  1  N  N  N  33.466  -10.118  24.113  -1.254   0.056   1.689  H5   9D9  27  
9D9  H6   H6   H  0  1  N  N  N  31.814   -9.851  24.766  -1.578  -1.647   1.285  H6   9D9  28  
9D9  H7   H7   H  0  1  N  N  N  34.441  -10.010  26.324  -0.003  -1.494  -0.623  H7   9D9  29  
9D9  H8   H8   H  0  1  N  N  N  33.358   -8.589  26.136   0.322   0.209  -0.219  H8   9D9  30  
9D9  H9   H9   H  0  1  N  N  N  31.543   -9.942  27.322   1.165  -0.481   2.009  H9   9D9  31  
9D9  H10  H10  H  0  1  N  N  N  32.795  -11.181  27.675   0.841  -2.183   1.604  H10  9D9  32  
9D9  H11  H11  H  0  1  N  N  N  34.819  -10.364  29.413   2.537  -3.394  -0.015  H11  9D9  33  
9D9  H12  H12  H  0  1  N  N  N  34.816   -8.578  31.231   4.807  -2.746  -0.985  H12  9D9  34  
9D9  H13  H13  H  0  1  N  N  N  29.174   -6.128  28.246   3.507   3.539   1.098  H13  9D9  35  
9D9  H14  H14  H  0  1  N  N  N  29.493   -5.036  29.552   5.019   3.778   0.405  H14  9D9  36  
9D9  H15  H15  H  0  1  N  N  N  31.115   -5.160  30.938   6.169   1.988  -0.571  H15  9D9  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9D9  O1P  P    DOUB  N  N   1  
9D9  F1   C14  SING  N  N   2  
9D9  F2   C14  SING  N  N   3  
9D9  C14  P    SING  N  N   4  
9D9  C14  C13  SING  N  N   5  
9D9  P    O2P  SING  N  N   6  
9D9  P    O3P  SING  N  N   7  
9D9  C12  C13  SING  N  N   8  
9D9  C12  C11  SING  N  N   9  
9D9  C11  C10  SING  N  N  10  
9D9  C10  C9   SING  N  N  11  
9D9  N3   C4   SING  N  N  12  
9D9  N3   C2   DOUB  N  N  13  
9D9  C9   C4   SING  Y  N  14  
9D9  C9   C8   DOUB  Y  N  15  
9D9  N2   C2   SING  N  N  16  
9D9  C4   C5   DOUB  Y  N  17  
9D9  C2   N1   SING  N  N  18  
9D9  C8   N7   SING  Y  N  19  
9D9  C5   N7   SING  Y  N  20  
9D9  C5   C6   SING  N  N  21  
9D9  N1   C6   SING  N  N  22  
9D9  C6   O6   DOUB  N  N  23  
9D9  O2P  H1   SING  N  N  24  
9D9  O3P  H2   SING  N  N  25  
9D9  C13  H3   SING  N  N  26  
9D9  C13  H4   SING  N  N  27  
9D9  C12  H5   SING  N  N  28  
9D9  C12  H6   SING  N  N  29  
9D9  C11  H7   SING  N  N  30  
9D9  C11  H8   SING  N  N  31  
9D9  C10  H9   SING  N  N  32  
9D9  C10  H10  SING  N  N  33  
9D9  C8   H11  SING  N  N  34  
9D9  N7   H12  SING  N  N  35  
9D9  N2   H13  SING  N  N  36  
9D9  N2   H14  SING  N  N  37  
9D9  N1   H15  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9D9  SMILES            ACDLabs               12.01  "OP(O)(=O)C(CCCCc1c2c(nc1)C(NC(=N2)N)=O)(F)F"  
9D9  InChI             InChI                 1.03   "InChI=1S/C11H15F2N4O4P/c12-11(13,22(19,20)21)4-2-1-3-6-5-15-8-7(6)16-10(14)17-9(8)18/h5,15H,1-4H2,(H2,19,20,21)(H3,14,16,17,18)"  
9D9  InChIKey          InChI                 1.03   OISKFAFOKMNXNK-UHFFFAOYSA-N  
9D9  SMILES_CANONICAL  CACTVS                3.385  "NC1=Nc2c(CCCCC(F)(F)[P](O)(O)=O)c[nH]c2C(=O)N1"  
9D9  SMILES            CACTVS                3.385  "NC1=Nc2c(CCCCC(F)(F)[P](O)(O)=O)c[nH]c2C(=O)N1"  
9D9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1c(c2c([nH]1)C(=O)NC(=N2)N)CCCCC(F)(F)P(=O)(O)O"  
9D9  SMILES            "OpenEye OEToolkits"  1.7.6  "c1c(c2c([nH]1)C(=O)NC(=N2)N)CCCCC(F)(F)P(=O)(O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9D9  "SYSTEMATIC NAME"  ACDLabs               12.01  "[5-(2-amino-4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)-1,1-difluoropentyl]phosphonic acid"  
9D9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "[5-(2-azanyl-4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)-1,1-bis(fluoranyl)pentyl]phosphonic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9D9  "Create component"   2009-02-09  PDBJ  
9D9  "Modify descriptor"  2011-06-04  RCSB  
9D9  "Modify name"        2016-06-21  PDBJ  
9D9  "Modify formula"     2016-06-21  PDBJ  
9D9  "Modify synonyms"    2016-06-21  PDBJ  
9D9  "Modify atom id"     2016-06-21  PDBJ  
9D9  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     9D9
_pdbx_chem_comp_synonyms.name        DFPP-DG
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
