data_8C9
#

_chem_comp.id                                   8C9
_chem_comp.name                                 
;(4~{S})-4-[(1~{R})-1-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[2-[(3~{R},5~{R})-4-methylidene-3,5-bis(oxidanyl
)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]ethyl]-1-(4-hydroxyphenyl)octan-1-one
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C35 H50 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "22S-butyl-25-hydroxyphenyl-2-methylidene-19,26,27-trinor-25-oxo-1-hydroxyvitamin D3"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-06-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       534.769
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    8C9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5XPL
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8C9  O3   O1   O  0  1  N  N  N   6.178  -2.816  13.283   6.167   0.817  -0.467  O3   8C9   1  
8C9  C22  C1   C  0  1  N  N  N   7.179  -2.982  14.009   5.099   1.335  -0.221  C22  8C9   2  
8C9  C23  C2   C  0  1  Y  N  N   7.699  -4.387  14.264   4.971   2.798  -0.238  C23  8C9   3  
8C9  C28  C3   C  0  1  Y  N  N   7.048  -5.466  13.657   3.740   3.399   0.052  C28  8C9   4  
8C9  C27  C4   C  0  1  Y  N  N   7.522  -6.774  13.827   3.627   4.766   0.035  C27  8C9   5  
8C9  C26  C5   C  0  1  Y  N  N   8.639  -7.005  14.626   4.731   5.554  -0.269  C26  8C9   6  
8C9  O4   O2   O  0  1  N  N  N   9.071  -8.281  14.770   4.614   6.906  -0.284  O4   8C9   7  
8C9  C25  C6   C  0  1  Y  N  N   9.298  -5.941  15.250   5.956   4.962  -0.557  C25  8C9   8  
8C9  C24  C7   C  0  1  Y  N  N   8.831  -4.639  15.067   6.082   3.597  -0.538  C24  8C9   9  
8C9  C21  C8   C  0  1  N  N  N   7.936  -1.805  14.629   3.901   0.478   0.096  C21  8C9  10  
8C9  C20  C9   C  0  1  N  N  N   7.764  -0.523  13.846   4.300  -0.998   0.040  C20  8C9  11  
8C9  C19  C10  C  0  1  N  N  S   8.463   0.661  14.564   3.120  -1.863   0.488  C19  8C9  12  
8C9  C31  C11  C  0  1  N  N  N   7.841   0.943  15.946   3.553  -3.330   0.537  C31  8C9  13  
8C9  C32  C12  C  0  1  N  N  N   8.789   0.501  17.045   4.611  -3.513   1.628  C32  8C9  14  
8C9  C33  C13  C  0  1  N  N  N   7.988  -0.271  18.060   5.124  -4.954   1.603  C33  8C9  15  
8C9  C34  C14  C  0  1  N  N  N   7.360   0.570  19.148   6.182  -5.136   2.694  C34  8C9  16  
8C9  C18  C15  C  0  1  N  N  R   8.447   1.910  13.706   1.967  -1.705  -0.505  C18  8C9  17  
8C9  C30  C16  C  0  1  N  N  N   7.009   2.443  13.513   2.407  -2.205  -1.882  C30  8C9  18  
8C9  C17  C17  C  0  1  N  N  R   9.473   2.961  14.180   0.766  -2.522  -0.026  C17  8C9  19  
8C9  C13  C18  C  0  1  N  N  R   9.451   4.281  13.447  -0.438  -2.267  -0.919  C13  8C9  20  
8C9  C29  C19  C  0  1  N  N  N   9.333   4.117  11.908  -0.398  -0.821  -1.419  C29  8C9  21  
8C9  C12  C20  C  0  1  N  N  N   8.451   5.315  13.966  -0.664  -3.184  -2.099  C12  8C9  22  
8C9  C11  C21  C  0  1  N  N  N   8.734   6.720  13.377  -1.867  -2.639  -2.886  C11  8C9  23  
8C9  C10  C22  C  0  1  N  N  N  10.199   7.257  13.494  -3.126  -2.575  -2.023  C10  8C9  24  
8C9  C16  C23  C  0  1  N  N  N  10.939   2.480  14.169   0.327  -2.057   1.387  C16  8C9  25  
8C9  C15  C24  C  0  1  N  N  N  11.821   3.641  13.750  -1.166  -1.640   1.266  C15  8C9  26  
8C9  C14  C25  C  0  1  N  N  S  10.829   4.803  13.822  -1.643  -2.440   0.048  C14  8C9  27  
8C9  C9   C26  C  0  1  N  N  N  11.140   6.113  13.120  -2.832  -1.902  -0.690  C9   8C9  28  
8C9  C8   C27  C  0  1  N  N  N  12.181   6.196  12.245  -3.575  -0.909  -0.215  C8   8C9  29  
8C9  C7   C28  C  0  1  N  N  N  12.460   7.379  11.452  -4.731  -0.421  -0.984  C7   8C9  30  
8C9  C5   C29  C  0  1  N  N  N  13.018   7.368  10.226  -5.415   0.635  -0.558  C5   8C9  31  
8C9  C6   C30  C  0  1  N  N  N  13.451   6.079   9.545  -6.683   1.064  -1.260  C6   8C9  32  
8C9  C1   C31  C  0  1  N  N  R  14.704   6.257   8.670  -7.817   1.123  -0.228  C1   8C9  33  
8C9  O1   O3   O  0  1  N  N  N  14.823   5.132   7.785  -8.165  -0.202   0.179  O1   8C9  34  
8C9  C4   C32  C  0  1  N  N  N  13.122   8.703   9.495  -4.942   1.425   0.641  C4   8C9  35  
8C9  C3   C33  C  0  1  N  N  R  14.455   8.843   8.762  -6.080   1.483   1.669  C3   8C9  36  
8C9  O2   O4   O  0  1  N  N  N  15.595   8.921   9.673  -5.755   2.426   2.692  O2   8C9  37  
8C9  C2   C34  C  0  1  N  N  N  14.674   7.588   7.921  -7.341   1.917   0.967  C2   8C9  38  
8C9  C35  C35  C  0  1  N  N  N  14.801   7.666   6.612  -8.016   2.958   1.388  C35  8C9  39  
8C9  H1   H1   H  0  1  N  N  N   6.171  -5.289  13.051   2.882   2.788   0.287  H1   8C9  40  
8C9  H2   H2   H  0  1  N  N  N   7.023  -7.599  13.340   2.678   5.231   0.259  H2   8C9  41  
8C9  H3   H3   H  0  1  N  N  N   9.834  -8.296  15.336   4.795   7.326   0.568  H3   8C9  42  
8C9  H4   H4   H  0  1  N  N  N  10.163  -6.126  15.870   6.811   5.579  -0.793  H4   8C9  43  
8C9  H5   H5   H  0  1  N  N  N   9.341  -3.816  15.545   7.035   3.138  -0.758  H5   8C9  44  
8C9  H6   H6   H  0  1  N  N  N   9.007  -2.055  14.664   3.536   0.718   1.095  H6   8C9  45  
8C9  H7   H7   H  0  1  N  N  N   7.563  -1.646  15.651   3.114   0.669  -0.634  H7   8C9  46  
8C9  H8   H8   H  0  1  N  N  N   6.691  -0.302  13.748   4.577  -1.261  -0.980  H8   8C9  47  
8C9  H9   H9   H  0  1  N  N  N   8.205  -0.649  12.846   5.149  -1.170   0.703  H9   8C9  48  
8C9  H10  H10  H  0  1  N  N  N   9.513   0.375  14.725   2.793  -1.547   1.478  H10  8C9  49  
8C9  H11  H11  H  0  1  N  N  N   7.647   2.021  16.045   2.689  -3.956   0.760  H11  8C9  50  
8C9  H12  H12  H  0  1  N  N  N   6.894   0.391  16.038   3.972  -3.618  -0.427  H12  8C9  51  
8C9  H13  H13  H  0  1  N  N  N   9.577  -0.140  16.624   5.440  -2.828   1.448  H13  8C9  52  
8C9  H14  H14  H  0  1  N  N  N   9.247   1.381  17.520   4.169  -3.300   2.601  H14  8C9  53  
8C9  H15  H15  H  0  1  N  N  N   7.183  -0.800  17.529   4.295  -5.638   1.783  H15  8C9  54  
8C9  H16  H16  H  0  1  N  N  N   8.656  -1.004  18.537   5.566  -5.166   0.630  H16  8C9  55  
8C9  H17  H17  H  0  1  N  N  N   6.799  -0.079  19.836   6.548  -6.163   2.677  H17  8C9  56  
8C9  H18  H18  H  0  1  N  N  N   8.148   1.099  19.703   7.011  -4.452   2.514  H18  8C9  57  
8C9  H19  H19  H  0  1  N  N  N   6.675   1.303  18.696   5.740  -4.924   3.668  H19  8C9  58  
8C9  H20  H20  H  0  1  N  N  N   8.784   1.595  12.707   1.687  -0.654  -0.573  H20  8C9  59  
8C9  H21  H21  H  0  1  N  N  N   6.356   1.624  13.176   3.263  -1.623  -2.224  H21  8C9  60  
8C9  H22  H22  H  0  1  N  N  N   6.635   2.841  14.468   2.687  -3.257  -1.815  H22  8C9  61  
8C9  H23  H23  H  0  1  N  N  N   7.013   3.243  12.758   1.586  -2.093  -2.590  H23  8C9  62  
8C9  H24  H24  H  0  1  N  N  N   9.228   3.179  15.230   1.011  -3.584  -0.016  H24  8C9  63  
8C9  H25  H25  H  0  1  N  N  N   8.331   3.739  11.655  -0.170  -0.155  -0.586  H25  8C9  64  
8C9  H26  H26  H  0  1  N  N  N   9.491   5.091  11.422   0.371  -0.722  -2.184  H26  8C9  65  
8C9  H27  H27  H  0  1  N  N  N  10.093   3.404  11.556  -1.367  -0.556  -1.841  H27  8C9  66  
8C9  H28  H28  H  0  1  N  N  N   8.524   5.365  15.062   0.221  -3.192  -2.735  H28  8C9  67  
8C9  H29  H29  H  0  1  N  N  N   7.435   5.005  13.680  -0.876  -4.193  -1.747  H29  8C9  68  
8C9  H30  H30  H  0  1  N  N  N   8.076   7.435  13.893  -1.633  -1.638  -3.247  H30  8C9  69  
8C9  H31  H31  H  0  1  N  N  N   8.476   6.690  12.308  -2.056  -3.288  -3.741  H31  8C9  70  
8C9  H32  H32  H  0  1  N  N  N  10.398   7.584  14.525  -3.894  -2.008  -2.550  H32  8C9  71  
8C9  H33  H33  H  0  1  N  N  N  10.345   8.103  12.806  -3.489  -3.587  -1.842  H33  8C9  72  
8C9  H34  H34  H  0  1  N  N  N  11.053   1.651  13.455   0.430  -2.876   2.100  H34  8C9  73  
8C9  H35  H35  H  0  1  N  N  N  11.226   2.140  15.175   0.930  -1.207   1.705  H35  8C9  74  
8C9  H36  H36  H  0  1  N  N  N  12.210   3.505  12.730  -1.722  -1.927   2.159  H36  8C9  75  
8C9  H37  H37  H  0  1  N  N  N  12.660   3.783  14.447  -1.253  -0.569   1.083  H37  8C9  76  
8C9  H38  H38  H  0  1  N  N  N  10.761   5.056  14.890  -1.784  -3.489   0.309  H38  8C9  77  
8C9  H39  H39  H  0  1  N  N  N  12.830   5.340  12.136  -3.331  -0.459   0.736  H39  8C9  78  
8C9  H40  H40  H  0  1  N  N  N  12.201   8.338  11.876  -5.023  -0.922  -1.895  H40  8C9  79  
8C9  H41  H41  H  0  1  N  N  N  12.627   5.723   8.910  -6.540   2.049  -1.703  H41  8C9  80  
8C9  H42  H42  H  0  1  N  N  N  13.667   5.328  10.319  -6.931   0.344  -2.039  H42  8C9  81  
8C9  H43  H43  H  0  1  N  N  N  15.576   6.273   9.341  -8.687   1.611  -0.668  H43  8C9  82  
8C9  H44  H44  H  0  1  N  N  N  14.838   4.329   8.293  -8.877  -0.238   0.832  H44  8C9  83  
8C9  H45  H45  H  0  1  N  N  N  13.030   9.519  10.227  -4.075   0.934   1.084  H45  8C9  84  
8C9  H46  H46  H  0  1  N  N  N  12.304   8.774   8.763  -4.673   2.434   0.332  H46  8C9  85  
8C9  H47  H47  H  0  1  N  N  N  14.424   9.726   8.106  -6.224   0.497   2.111  H47  8C9  86  
8C9  H48  H48  H  0  1  N  N  N  15.509   9.690  10.224  -6.433   2.513   3.376  H48  8C9  87  
8C9  H49  H49  H  0  1  N  N  N  14.751   8.627   6.121  -8.920   3.257   0.879  H49  8C9  88  
8C9  H50  H50  H  0  1  N  N  N  14.956   6.769   6.030  -7.667   3.518   2.243  H50  8C9  89  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8C9  C35  C2   DOUB  N  N   1  
8C9  O1   C1   SING  N  N   2  
8C9  C2   C1   SING  N  N   3  
8C9  C2   C3   SING  N  N   4  
8C9  C1   C6   SING  N  N   5  
8C9  C3   C4   SING  N  N   6  
8C9  C3   O2   SING  N  N   7  
8C9  C4   C5   SING  N  N   8  
8C9  C6   C5   SING  N  N   9  
8C9  C5   C7   DOUB  N  N  10  
8C9  C7   C8   SING  N  N  11  
8C9  C29  C13  SING  N  N  12  
8C9  C8   C9   DOUB  N  E  13  
8C9  C9   C10  SING  N  N  14  
8C9  C9   C14  SING  N  N  15  
8C9  O3   C22  DOUB  N  N  16  
8C9  C11  C10  SING  N  N  17  
8C9  C11  C12  SING  N  N  18  
8C9  C13  C14  SING  N  N  19  
8C9  C13  C12  SING  N  N  20  
8C9  C13  C17  SING  N  N  21  
8C9  C30  C18  SING  N  N  22  
8C9  C28  C27  DOUB  Y  N  23  
8C9  C28  C23  SING  Y  N  24  
8C9  C18  C17  SING  N  N  25  
8C9  C18  C19  SING  N  N  26  
8C9  C15  C14  SING  N  N  27  
8C9  C15  C16  SING  N  N  28  
8C9  C27  C26  SING  Y  N  29  
8C9  C20  C19  SING  N  N  30  
8C9  C20  C21  SING  N  N  31  
8C9  C22  C23  SING  N  N  32  
8C9  C22  C21  SING  N  N  33  
8C9  C16  C17  SING  N  N  34  
8C9  C23  C24  DOUB  Y  N  35  
8C9  C19  C31  SING  N  N  36  
8C9  C26  O4   SING  N  N  37  
8C9  C26  C25  DOUB  Y  N  38  
8C9  C24  C25  SING  Y  N  39  
8C9  C31  C32  SING  N  N  40  
8C9  C32  C33  SING  N  N  41  
8C9  C33  C34  SING  N  N  42  
8C9  C28  H1   SING  N  N  43  
8C9  C27  H2   SING  N  N  44  
8C9  O4   H3   SING  N  N  45  
8C9  C25  H4   SING  N  N  46  
8C9  C24  H5   SING  N  N  47  
8C9  C21  H6   SING  N  N  48  
8C9  C21  H7   SING  N  N  49  
8C9  C20  H8   SING  N  N  50  
8C9  C20  H9   SING  N  N  51  
8C9  C19  H10  SING  N  N  52  
8C9  C31  H11  SING  N  N  53  
8C9  C31  H12  SING  N  N  54  
8C9  C32  H13  SING  N  N  55  
8C9  C32  H14  SING  N  N  56  
8C9  C33  H15  SING  N  N  57  
8C9  C33  H16  SING  N  N  58  
8C9  C34  H17  SING  N  N  59  
8C9  C34  H18  SING  N  N  60  
8C9  C34  H19  SING  N  N  61  
8C9  C18  H20  SING  N  N  62  
8C9  C30  H21  SING  N  N  63  
8C9  C30  H22  SING  N  N  64  
8C9  C30  H23  SING  N  N  65  
8C9  C17  H24  SING  N  N  66  
8C9  C29  H25  SING  N  N  67  
8C9  C29  H26  SING  N  N  68  
8C9  C29  H27  SING  N  N  69  
8C9  C12  H28  SING  N  N  70  
8C9  C12  H29  SING  N  N  71  
8C9  C11  H30  SING  N  N  72  
8C9  C11  H31  SING  N  N  73  
8C9  C10  H32  SING  N  N  74  
8C9  C10  H33  SING  N  N  75  
8C9  C16  H34  SING  N  N  76  
8C9  C16  H35  SING  N  N  77  
8C9  C15  H36  SING  N  N  78  
8C9  C15  H37  SING  N  N  79  
8C9  C14  H38  SING  N  N  80  
8C9  C8   H39  SING  N  N  81  
8C9  C7   H40  SING  N  N  82  
8C9  C6   H41  SING  N  N  83  
8C9  C6   H42  SING  N  N  84  
8C9  C1   H43  SING  N  N  85  
8C9  O1   H44  SING  N  N  86  
8C9  C4   H45  SING  N  N  87  
8C9  C4   H46  SING  N  N  88  
8C9  C3   H47  SING  N  N  89  
8C9  O2   H48  SING  N  N  90  
8C9  C35  H49  SING  N  N  91  
8C9  C35  H50  SING  N  N  92  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8C9  InChI             InChI                 1.03   "InChI=1S/C35H50O4/c1-5-6-8-26(14-19-32(37)28-12-15-29(36)16-13-28)23(2)30-17-18-31-27(9-7-20-35(30,31)4)11-10-25-21-33(38)24(3)34(39)22-25/h10-13,15-16,23,26,30-31,33-34,36,38-39H,3,5-9,14,17-22H2,1-2,4H3/b27-11+/t23-,26+,30-,31+,33-,34-,35-/m1/s1"  
8C9  InChIKey          InChI                 1.03   IDKWEPILMVJEEL-HXCBKPQPSA-N  
8C9  SMILES_CANONICAL  CACTVS                3.385  "CCCC[C@@H](CCC(=O)c1ccc(O)cc1)[C@@H](C)[C@H]2CC[C@H]3C(/CCC[C@]23C)=C/C=C4\C[C@@H](O)C(=C)[C@H](O)C4"  
8C9  SMILES            CACTVS                3.385  "CCCC[CH](CCC(=O)c1ccc(O)cc1)[CH](C)[CH]2CC[CH]3C(CCC[C]23C)=CC=C4C[CH](O)C(=C)[CH](O)C4"  
8C9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCCC[C@@H](CCC(=O)c1ccc(cc1)O)[C@@H](C)[C@H]2CC[C@@H]\3[C@@]2(CCC/C3=C\C=C4C[C@H](C(=C)[C@@H](C4)O)O)C"  
8C9  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCCC(CCC(=O)c1ccc(cc1)O)C(C)C2CCC3C2(CCCC3=CC=C4CC(C(=C)C(C4)O)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          8C9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(4~{S})-4-[(1~{R})-1-[(1~{R},3~{a}~{S},4~{E},7~{a}~{R})-7~{a}-methyl-4-[2-[(3~{R},5~{R})-4-methylidene-3,5-bis(oxidanyl)cyclohexylidene]ethylidene]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-1-yl]ethyl]-1-(4-hydroxyphenyl)octan-1-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8C9  "Create component"  2017-06-07  PDBJ  
8C9  "Initial release"   2018-06-06  RCSB  
8C9  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     8C9
_pdbx_chem_comp_synonyms.name        "22S-butyl-25-hydroxyphenyl-2-methylidene-19,26,27-trinor-25-oxo-1-hydroxyvitamin D3"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
