data_7U9
# 
_chem_comp.id                                    7U9 
_chem_comp.name                                  "2-[(3R)-3-azanylpyrrolidin-1-yl]carbonyl-1H-benzimidazole-4-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H15 N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-12-12 
_chem_comp.pdbx_modified_date                    2017-01-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        273.291 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7U9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WS1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7U9 CAJ C1  C 0 1 N N N -12.253 -7.716 8.902 -3.919 0.531  -0.227 CAJ 7U9 1  
7U9 CAS C2  C 0 1 N N R -13.543 -7.651 8.075 -4.456 -0.915 -0.282 CAS 7U9 2  
7U9 NAB N1  N 0 1 N N N -14.607 -8.615 8.469 -5.667 -1.052 0.539  NAB 7U9 3  
7U9 CAH C3  C 0 1 N N N -12.996 -7.800 6.692 -3.289 -1.742 0.318  CAH 7U9 4  
7U9 CAI C4  C 0 1 N N N -12.214 -6.474 6.779 -2.055 -0.969 -0.211 CAI 7U9 5  
7U9 NAT N2  N 0 1 N N N -11.374 -6.744 8.097 -2.453 0.454  -0.166 NAT 7U9 6  
7U9 CAN C5  C 0 1 N N N -10.133 -6.432 8.632 -1.610 1.503  -0.087 CAN 7U9 7  
7U9 OAD O1  O 0 1 N N N -9.822  -6.904 9.719 -2.050 2.635  -0.058 OAD 7U9 8  
7U9 CAP C6  C 0 1 Y N N -9.326  -5.400 8.232 -0.148 1.275  -0.037 CAP 7U9 9  
7U9 NAL N3  N 0 1 Y N N -8.144  -5.020 8.793 0.799  2.259  0.044  NAL 7U9 10 
7U9 NAK N4  N 0 1 Y N N -9.699  -4.487 7.372 0.434  0.101  -0.057 NAK 7U9 11 
7U9 CAR C7  C 0 1 Y N N -8.744  -3.540 7.254 1.765  0.254  0.003  CAR 7U9 12 
7U9 CAQ C8  C 0 1 Y N N -7.782  -3.866 8.153 2.027  1.636  0.068  CAQ 7U9 13 
7U9 CAG C9  C 0 1 Y N N -6.681  -3.158 8.241 3.337  2.093  0.139  CAG 7U9 14 
7U9 CAE C10 C 0 1 Y N N -6.510  -1.954 7.538 4.385  1.195  0.144  CAE 7U9 15 
7U9 CAF C11 C 0 1 Y N N -7.518  -1.648 6.595 4.149  -0.168 0.080  CAF 7U9 16 
7U9 CAO C12 C 0 1 Y N N -8.656  -2.432 6.438 2.848  -0.655 0.013  CAO 7U9 17 
7U9 CAM C13 C 0 1 N N N -9.639  -2.041 5.459 2.600  -2.107 -0.054 CAM 7U9 18 
7U9 OAC O2  O 0 1 N N N -9.396  -1.203 4.566 1.461  -2.527 -0.113 OAC 7U9 19 
7U9 NAA N5  N 0 1 N N N -10.814 -2.669 5.355 3.637  -2.968 -0.051 NAA 7U9 20 
7U9 H1  H1  H 0 1 N N N -12.410 -7.366 9.933 -4.225 1.074  -1.121 H1  7U9 21 
7U9 H2  H2  H 0 1 N N N -11.830 -8.731 8.920 -4.301 1.034  0.661  H2  7U9 22 
7U9 H3  H3  H 0 1 N N N -13.950 -6.634 8.173 -4.654 -1.214 -1.312 H3  7U9 23 
7U9 H4  H4  H 0 1 N N N -14.898 -8.426 9.407 -6.404 -0.452 0.199  H4  7U9 24 
7U9 H5  H5  H 0 1 N N N -15.388 -8.520 7.852 -5.971 -2.013 0.577  H5  7U9 25 
7U9 H7  H7  H 0 1 N N N -13.771 -7.801 5.912 -3.320 -1.730 1.408  H7  7U9 26 
7U9 H8  H8  H 0 1 N N N -12.351 -8.682 6.569 -3.301 -2.764 -0.060 H8  7U9 27 
7U9 H9  H9  H 0 1 N N N -11.565 -6.323 5.904 -1.194 -1.141 0.435  H9  7U9 28 
7U9 H10 H10 H 0 1 N N N -12.885 -5.610 6.891 -1.829 -1.269 -1.234 H10 7U9 29 
7U9 H11 H11 H 0 1 N N N -7.644  -5.488 9.522 0.637  3.214  0.077  H11 7U9 30 
7U9 H13 H13 H 0 1 N N N -5.881  -3.512 8.874 3.536  3.153  0.189  H13 7U9 31 
7U9 H14 H14 H 0 1 N N N -5.664  -1.304 7.707 5.400  1.559  0.199  H14 7U9 32 
7U9 H15 H15 H 0 1 N N N -7.400  -0.773 5.973 4.980  -0.857 0.085  H15 7U9 33 
7U9 H16 H16 H 0 1 N N N -11.430 -2.454 4.597 4.546  -2.633 -0.004 H16 7U9 34 
7U9 H17 H17 H 0 1 N N N -11.077 -3.354 6.035 3.474  -3.924 -0.096 H17 7U9 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7U9 OAC CAM DOUB N N 1  
7U9 NAA CAM SING N N 2  
7U9 CAM CAO SING N N 3  
7U9 CAO CAF SING Y N 4  
7U9 CAO CAR DOUB Y N 5  
7U9 CAF CAE DOUB Y N 6  
7U9 CAH CAI SING N N 7  
7U9 CAH CAS SING N N 8  
7U9 CAI NAT SING N N 9  
7U9 CAR NAK SING Y N 10 
7U9 CAR CAQ SING Y N 11 
7U9 NAK CAP DOUB Y N 12 
7U9 CAE CAG SING Y N 13 
7U9 CAS NAB SING N N 14 
7U9 CAS CAJ SING N N 15 
7U9 NAT CAN SING N N 16 
7U9 NAT CAJ SING N N 17 
7U9 CAQ CAG DOUB Y N 18 
7U9 CAQ NAL SING Y N 19 
7U9 CAP CAN SING N N 20 
7U9 CAP NAL SING Y N 21 
7U9 CAN OAD DOUB N N 22 
7U9 CAJ H1  SING N N 23 
7U9 CAJ H2  SING N N 24 
7U9 CAS H3  SING N N 25 
7U9 NAB H4  SING N N 26 
7U9 NAB H5  SING N N 27 
7U9 CAH H7  SING N N 28 
7U9 CAH H8  SING N N 29 
7U9 CAI H9  SING N N 30 
7U9 CAI H10 SING N N 31 
7U9 NAL H11 SING N N 32 
7U9 CAG H13 SING N N 33 
7U9 CAE H14 SING N N 34 
7U9 CAF H15 SING N N 35 
7U9 NAA H16 SING N N 36 
7U9 NAA H17 SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7U9 InChI            InChI                1.03  "InChI=1S/C13H15N5O2/c14-7-4-5-18(6-7)13(20)12-16-9-3-1-2-8(11(15)19)10(9)17-12/h1-3,7H,4-6,14H2,(H2,15,19)(H,16,17)/t7-/m1/s1" 
7U9 InChIKey         InChI                1.03  WHEDMAICUFWICE-SSDOTTSWSA-N                                                                                                     
7U9 SMILES_CANONICAL CACTVS               3.385 "N[C@@H]1CCN(C1)C(=O)c2[nH]c3cccc(C(N)=O)c3n2"                                                                                  
7U9 SMILES           CACTVS               3.385 "N[CH]1CCN(C1)C(=O)c2[nH]c3cccc(C(N)=O)c3n2"                                                                                    
7U9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(c2c(c1)[nH]c(n2)C(=O)N3CC[C@H](C3)N)C(=O)N"                                                                               
7U9 SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(c2c(c1)[nH]c(n2)C(=O)N3CCC(C3)N)C(=O)N"                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7U9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "2-[(3~{R})-3-azanylpyrrolidin-1-yl]carbonyl-1~{H}-benzimidazole-4-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7U9 "Create component" 2016-12-12 PDBJ 
7U9 "Initial release"  2017-01-25 RCSB 
# 
