data_7A9
# 
_chem_comp.id                                    7A9 
_chem_comp.name                                  palonosetron 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H24 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-21 
_chem_comp.pdbx_modified_date                    2016-10-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        296.407 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7A9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LXB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7A9 C22 C1  C 0 1 N N N 8.125 28.289 27.661 4.843  -0.110 -0.165 C22 7A9 1  
7A9 C13 C2  C 0 1 Y N N 6.655 30.581 34.687 -2.328 -2.372 0.161  C13 7A9 2  
7A9 C21 C3  C 0 1 N N N 8.758 27.716 28.939 4.162  0.985  -0.991 C21 7A9 3  
7A9 C14 C4  C 0 1 N N N 2.833 28.643 35.125 -4.299 1.436  0.123  C14 7A9 4  
7A9 C11 C5  C 0 1 Y N N 4.770 29.953 36.069 -4.283 -1.021 0.421  C11 7A9 5  
7A9 C16 C6  C 0 1 N N N 6.080 29.074 28.634 2.748  -1.334 0.011  C16 7A9 6  
7A9 C20 C7  C 0 1 N N N 7.676 27.707 30.018 2.695  1.092  -0.557 C20 7A9 7  
7A9 C19 C8  C 0 1 N N N 6.795 26.513 29.671 2.651  1.424  0.940  C19 7A9 8  
7A9 O07 O1  O 0 1 N N N 7.850 30.504 32.089 0.369  -2.395 -0.635 O07 7A9 9  
7A9 C06 C9  C 0 1 N N N 6.760 29.933 32.222 -0.140 -1.318 -0.393 C06 7A9 10 
7A9 N05 N1  N 0 1 N N N 6.149 29.287 31.199 0.612  -0.201 -0.373 N05 7A9 11 
7A9 C15 C10 C 0 1 N N S 6.915 29.046 29.947 2.013  -0.261 -0.796 C15 7A9 12 
7A9 C18 C11 C 0 1 N N N 6.311 26.710 28.220 3.373  0.317  1.713  C18 7A9 13 
7A9 N17 N2  N 0 1 N N N 6.652 28.067 27.700 3.869  -0.693 0.768  N17 7A9 14 
7A9 C04 C12 C 0 1 N N N 4.737 28.874 31.187 0.041  1.070  0.069  C04 7A9 15 
7A9 C08 C13 C 0 1 Y N N 6.073 29.956 33.566 -1.590 -1.224 -0.119 C08 7A9 16 
7A9 C12 C14 C 0 1 Y N N 6.009 30.576 35.933 -3.677 -2.261 0.428  C12 7A9 17 
7A9 C10 C15 C 0 1 Y N N 4.182 29.331 34.959 -3.557 0.131  0.133  C10 7A9 18 
7A9 C01 C16 C 0 1 N N N 1.994 28.539 33.834 -3.449 2.607  -0.332 C01 7A9 19 
7A9 C09 C17 C 0 1 Y N N 4.833 29.328 33.716 -2.212 0.029  -0.135 C09 7A9 20 
7A9 C03 C18 C 0 1 N N R 4.162 28.626 32.583 -1.379 1.240  -0.466 C03 7A9 21 
7A9 C02 C19 C 0 1 N N N 2.691 29.033 32.563 -2.016 2.475  0.176  C02 7A9 22 
7A9 H1  H1  H 0 1 N N N 8.550 27.783 26.782 5.219  -0.887 -0.830 H1  7A9 23 
7A9 H2  H2  H 0 1 N N N 8.333 29.367 27.599 5.671  0.321  0.397  H2  7A9 24 
7A9 H3  H3  H 0 1 N N N 7.612 31.071 34.586 -1.849 -3.341 0.163  H3  7A9 25 
7A9 H4  H4  H 0 1 N N N 9.115 26.692 28.756 4.664  1.937  -0.820 H4  7A9 26 
7A9 H5  H5  H 0 1 N N N 9.601 28.347 29.257 4.212  0.728  -2.049 H5  7A9 27 
7A9 H6  H6  H 0 1 N N N 2.250 29.208 35.867 -5.160 1.343  -0.538 H6  7A9 28 
7A9 H7  H7  H 0 1 N N N 3.013 27.624 35.499 -4.654 1.644  1.132  H7  7A9 29 
7A9 H8  H8  H 0 1 N N N 4.266 29.949 37.024 -5.339 -0.945 0.634  H8  7A9 30 
7A9 H9  H9  H 0 1 N N N 6.132 30.075 28.181 2.057  -1.794 0.718  H9  7A9 31 
7A9 H10 H10 H 0 1 N N N 5.031 28.825 28.854 3.137  -2.096 -0.665 H10 7A9 32 
7A9 H11 H11 H 0 1 N N N 8.127 27.577 31.013 2.191  1.872  -1.128 H11 7A9 33 
7A9 H12 H12 H 0 1 N N N 5.933 26.470 30.353 3.148  2.377  1.118  H12 7A9 34 
7A9 H13 H13 H 0 1 N N N 7.374 25.581 29.752 1.613  1.485  1.270  H13 7A9 35 
7A9 H14 H14 H 0 1 N N N 7.671 29.841 29.861 2.066  -0.502 -1.858 H14 7A9 36 
7A9 H15 H15 H 0 1 N N N 5.219 26.581 28.189 4.212  0.744  2.262  H15 7A9 37 
7A9 H16 H16 H 0 1 N N N 6.788 25.953 27.580 2.680  -0.150 2.413  H16 7A9 38 
7A9 H18 H18 H 0 1 N N N 4.147 29.666 30.703 0.020  1.095  1.158  H18 7A9 39 
7A9 H19 H19 H 0 1 N N N 4.651 27.945 30.605 0.662  1.888  -0.296 H19 7A9 40 
7A9 H20 H20 H 0 1 N N N 6.471 31.054 36.784 -4.259 -3.145 0.643  H20 7A9 41 
7A9 H21 H21 H 0 1 N N N 1.079 29.134 33.974 -3.435 2.638  -1.421 H21 7A9 42 
7A9 H22 H22 H 0 1 N N N 1.726 27.482 33.686 -3.884 3.533  0.046  H22 7A9 43 
7A9 H23 H23 H 0 1 N N N 4.207 27.544 32.776 -1.345 1.372  -1.548 H23 7A9 44 
7A9 H24 H24 H 0 1 N N N 2.617 30.129 32.509 -1.447 3.364  -0.098 H24 7A9 45 
7A9 H25 H25 H 0 1 N N N 2.202 28.589 31.683 -2.021 2.362  1.260  H25 7A9 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7A9 C22 N17 SING N N 1  
7A9 C22 C21 SING N N 2  
7A9 N17 C18 SING N N 3  
7A9 N17 C16 SING N N 4  
7A9 C18 C19 SING N N 5  
7A9 C16 C15 SING N N 6  
7A9 C21 C20 SING N N 7  
7A9 C19 C20 SING N N 8  
7A9 C15 C20 SING N N 9  
7A9 C15 N05 SING N N 10 
7A9 C04 N05 SING N N 11 
7A9 C04 C03 SING N N 12 
7A9 N05 C06 SING N N 13 
7A9 O07 C06 DOUB N N 14 
7A9 C06 C08 SING N N 15 
7A9 C02 C03 SING N N 16 
7A9 C02 C01 SING N N 17 
7A9 C03 C09 SING N N 18 
7A9 C08 C09 DOUB Y N 19 
7A9 C08 C13 SING Y N 20 
7A9 C09 C10 SING Y N 21 
7A9 C01 C14 SING N N 22 
7A9 C13 C12 DOUB Y N 23 
7A9 C10 C14 SING N N 24 
7A9 C10 C11 DOUB Y N 25 
7A9 C12 C11 SING Y N 26 
7A9 C22 H1  SING N N 27 
7A9 C22 H2  SING N N 28 
7A9 C13 H3  SING N N 29 
7A9 C21 H4  SING N N 30 
7A9 C21 H5  SING N N 31 
7A9 C14 H6  SING N N 32 
7A9 C14 H7  SING N N 33 
7A9 C11 H8  SING N N 34 
7A9 C16 H9  SING N N 35 
7A9 C16 H10 SING N N 36 
7A9 C20 H11 SING N N 37 
7A9 C19 H12 SING N N 38 
7A9 C19 H13 SING N N 39 
7A9 C15 H14 SING N N 40 
7A9 C18 H15 SING N N 41 
7A9 C18 H16 SING N N 42 
7A9 C04 H18 SING N N 43 
7A9 C04 H19 SING N N 44 
7A9 C12 H20 SING N N 45 
7A9 C01 H21 SING N N 46 
7A9 C01 H22 SING N N 47 
7A9 C03 H23 SING N N 48 
7A9 C02 H24 SING N N 49 
7A9 C02 H25 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7A9 InChI            InChI                1.03  "InChI=1S/C19H24N2O/c22-19-16-6-2-4-14-3-1-5-15(18(14)16)11-21(19)17-12-20-9-7-13(17)8-10-20/h2,4,6,13,15,17H,1,3,5,7-12H2/t15-,17+/m0/s1" 
7A9 InChIKey         InChI                1.03  CPZBLNMUGSZIPR-DOTOQJQBSA-N                                                                                                                
7A9 SMILES_CANONICAL CACTVS               3.385 "O=C1N(C[C@@H]2CCCc3cccc1c23)[C@@H]4CN5CCC4CC5"                                                                                            
7A9 SMILES           CACTVS               3.385 "O=C1N(C[CH]2CCCc3cccc1c23)[CH]4CN5CCC4CC5"                                                                                                
7A9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1cc2c3c(c1)C(=O)N(C[C@@H]3CCC2)[C@@H]4CN5CCC4CC5"                                                                                        
7A9 SMILES           "OpenEye OEToolkits" 2.0.5 "c1cc2c3c(c1)C(=O)N(CC3CCC2)C4CN5CCC4CC5"                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
7A9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "(3~{a}~{R})-2-[(3~{S})-1-azabicyclo[2.2.2]octan-3-yl]-3~{a},4,5,6-tetrahydro-3~{H}-benzo[de]isoquinolin-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7A9 "Create component" 2016-09-21 EBI  
7A9 "Initial release"  2016-10-12 RCSB 
# 
