data_6W9
#

_chem_comp.id                                   6W9
_chem_comp.name                                 "2-[2-(6-oxidanylidene-1~{H}-purin-9-yl)ethyl-(4-phosphonobutyl)amino]ethylphosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H23 N5 O7 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "9-[N-(Phosphonoethyl)-N-(phosphonobutyl)-2-aminoethyl]-hypoxanthine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-07-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       423.299
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6W9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KNV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6W9  C4   C1   C  0  1  Y  N  N  -36.622  45.432  -40.460   3.796   1.605   0.177  C4   6W9   1  
6W9  C5   C2   C  0  1  Y  N  N  -37.557  45.778  -39.490   5.178   1.454   0.327  C5   6W9   2  
6W9  C6   C3   C  0  1  N  N  N  -37.185  46.561  -38.428   6.034   2.269  -0.455  C6   6W9   3  
6W9  C8   C4   C  0  1  Y  N  N  -38.496  44.506  -41.063   4.229   0.049   1.674  C8   6W9   4  
6W9  N1   N1   N  0  1  N  N  N  -35.891  47.003  -38.324   5.470   3.153  -1.309  N1   6W9   5  
6W9  N3   N2   N  0  1  N  N  N  -35.363  45.849  -40.379   3.319   2.507  -0.692  N3   6W9   6  
6W9  OAD  O1   O  0  1  N  N  N  -31.434  43.868  -46.642  -5.205   3.711   0.478  OAD  6W9   7  
6W9  PAZ  P1   P  0  1  N  N  N  -31.341  44.848  -45.490  -5.797   2.436   0.016  PAZ  6W9   8  
6W9  OAE  O2   O  0  1  N  N  N  -30.997  46.244  -46.029  -7.267   2.265   0.650  OAE  6W9   9  
6W9  OAB  O3   O  0  1  N  N  N  -30.240  44.392  -44.520  -5.904   2.445  -1.591  OAB  6W9  10  
6W9  CAP  C5   C  0  1  N  N  N  -32.986  44.915  -44.586  -4.741   1.048   0.547  CAP  6W9  11  
6W9  CAK  C6   C  0  1  N  N  N  -33.186  43.634  -43.766  -3.312   1.275   0.048  CAK  6W9  12  
6W9  CAJ  C7   C  0  1  N  N  N  -33.970  42.580  -44.599  -2.426   0.110   0.494  CAJ  6W9  13  
6W9  CAL  C8   C  0  1  N  N  N  -34.721  41.593  -43.624  -0.998   0.336  -0.005  CAL  6W9  14  
6W9  NAX  N3   N  0  1  N  N  N  -36.126  41.988  -43.521  -0.147  -0.782   0.423  NAX  6W9  15  
6W9  CAN  C9   C  0  1  N  N  N  -36.935  40.839  -43.615  -0.552  -2.033  -0.233  CAN  6W9  16  
6W9  CAQ  C10  C  0  1  N  N  N  -37.894  40.969  -44.820   0.060  -3.221   0.512  CAQ  6W9  17  
6W9  PBA  P2   P  0  1  N  N  N  -38.567  39.297  -45.237  -0.381  -4.768  -0.344  PBA  6W9  18  
6W9  OAF  O4   O  0  1  N  N  N  -37.492  38.275  -45.048   0.369  -6.005   0.362  OAF  6W9  19  
6W9  OAG  O5   O  0  1  N  N  N  -39.723  38.943  -44.339  -1.974  -4.990  -0.264  OAG  6W9  20  
6W9  OAC  O6   O  0  1  N  N  N  -39.031  39.288  -46.680   0.035  -4.683  -1.762  OAC  6W9  21  
6W9  CAM  C11  C  0  1  N  N  N  -36.363  42.639  -42.260   1.271  -0.491   0.171  CAM  6W9  22  
6W9  CAO  C12  C  0  1  N  N  N  -36.623  44.149  -42.479   1.786   0.490   1.226  CAO  6W9  23  
6W9  N9   N4   N  0  1  Y  N  N  -37.253  44.705  -41.318   3.222   0.706   1.033  N9   6W9  24  
6W9  C2   C13  C  0  1  N  N  N  -34.940  46.649  -39.317   4.120   3.248  -1.405  C2   6W9  25  
6W9  O6   O7   O  0  1  N  N  N  -38.165  46.924  -37.411   7.246   2.176  -0.361  O6   6W9  26  
6W9  N7   N5   N  0  1  Y  N  N  -38.770  45.173  -39.889   5.380   0.491   1.255  N7   6W9  27  
6W9  H1   H1   H  0  1  N  N  N  -39.191  43.928  -41.654   4.093  -0.723   2.417  H1   6W9  28  
6W9  H2   H2   H  0  1  N  N  N  -35.618  47.574  -37.550   6.034   3.723  -1.855  H2   6W9  29  
6W9  H3   H3   H  0  1  N  N  N  -30.913  46.207  -46.975  -7.884   2.970   0.409  H3   6W9  30  
6W9  H4   H4   H  0  1  N  N  N  -29.845  43.590  -44.843  -6.283   1.639  -1.964  H4   6W9  31  
6W9  H5   H5   H  0  1  N  N  N  -32.996  45.784  -43.912  -4.740   0.988   1.635  H5   6W9  32  
6W9  H6   H6   H  0  1  N  N  N  -33.801  45.009  -45.319  -5.128   0.118   0.132  H6   6W9  33  
6W9  H7   H7   H  0  1  N  N  N  -33.753  43.871  -42.854  -3.313   1.335  -1.040  H7   6W9  34  
6W9  H8   H8   H  0  1  N  N  N  -32.204  43.222  -43.490  -2.926   2.205   0.463  H8   6W9  35  
6W9  H9   H9   H  0  1  N  N  N  -34.703  43.091  -45.240  -2.426   0.049   1.582  H9   6W9  36  
6W9  H10  H10  H  0  1  N  N  N  -33.267  42.012  -45.226  -2.813  -0.821   0.078  H10  6W9  37  
6W9  H11  H11  H  0  1  N  N  N  -34.656  40.568  -44.018  -0.998   0.396  -1.094  H11  6W9  38  
6W9  H12  H12  H  0  1  N  N  N  -34.254  41.634  -42.629  -0.611   1.267   0.410  H12  6W9  39  
6W9  H14  H14  H  0  1  N  N  N  -37.522  40.730  -42.691  -1.639  -2.116  -0.218  H14  6W9  40  
6W9  H15  H15  H  0  1  N  N  N  -36.297  39.953  -43.751  -0.202  -2.032  -1.265  H15  6W9  41  
6W9  H16  H16  H  0  1  N  N  N  -37.347  41.373  -45.685   1.145  -3.115   0.536  H16  6W9  42  
6W9  H17  H17  H  0  1  N  N  N  -38.722  41.646  -44.561  -0.324  -3.247   1.532  H17  6W9  43  
6W9  H18  H18  H  0  1  N  N  N  -37.325  37.834  -45.873   0.180  -6.863  -0.043  H18  6W9  44  
6W9  H19  H19  H  0  1  N  N  N  -40.498  38.789  -44.866  -2.317  -5.055   0.637  H19  6W9  45  
6W9  H20  H20  H  0  1  N  N  N  -37.241  42.186  -41.776   1.846  -1.416   0.223  H20  6W9  46  
6W9  H21  H21  H  0  1  N  N  N  -35.482  42.512  -41.614   1.381  -0.050  -0.820  H21  6W9  47  
6W9  H22  H22  H  0  1  N  N  N  -35.667  44.662  -42.657   1.259   1.439   1.128  H22  6W9  48  
6W9  H23  H23  H  0  1  N  N  N  -37.280  44.284  -43.351   1.611   0.079   2.221  H23  6W9  49  
6W9  H24  H24  H  0  1  N  N  N  -33.917  46.990  -39.252   3.695   3.963  -2.094  H24  6W9  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6W9  OAC  PBA  DOUB  N  N   1  
6W9  OAD  PAZ  DOUB  N  N   2  
6W9  OAE  PAZ  SING  N  N   3  
6W9  PAZ  CAP  SING  N  N   4  
6W9  PAZ  OAB  SING  N  N   5  
6W9  PBA  OAF  SING  N  N   6  
6W9  PBA  CAQ  SING  N  N   7  
6W9  PBA  OAG  SING  N  N   8  
6W9  CAQ  CAN  SING  N  N   9  
6W9  CAJ  CAK  SING  N  N  10  
6W9  CAJ  CAL  SING  N  N  11  
6W9  CAP  CAK  SING  N  N  12  
6W9  CAL  NAX  SING  N  N  13  
6W9  CAN  NAX  SING  N  N  14  
6W9  NAX  CAM  SING  N  N  15  
6W9  CAO  CAM  SING  N  N  16  
6W9  CAO  N9   SING  N  N  17  
6W9  N9   C8   SING  Y  N  18  
6W9  N9   C4   SING  Y  N  19  
6W9  C8   N7   DOUB  Y  N  20  
6W9  C4   N3   SING  N  N  21  
6W9  C4   C5   DOUB  Y  N  22  
6W9  N3   C2   DOUB  N  N  23  
6W9  N7   C5   SING  Y  N  24  
6W9  C5   C6   SING  N  N  25  
6W9  C2   N1   SING  N  N  26  
6W9  C6   N1   SING  N  N  27  
6W9  C6   O6   DOUB  N  N  28  
6W9  C8   H1   SING  N  N  29  
6W9  N1   H2   SING  N  N  30  
6W9  OAE  H3   SING  N  N  31  
6W9  OAB  H4   SING  N  N  32  
6W9  CAP  H5   SING  N  N  33  
6W9  CAP  H6   SING  N  N  34  
6W9  CAK  H7   SING  N  N  35  
6W9  CAK  H8   SING  N  N  36  
6W9  CAJ  H9   SING  N  N  37  
6W9  CAJ  H10  SING  N  N  38  
6W9  CAL  H11  SING  N  N  39  
6W9  CAL  H12  SING  N  N  40  
6W9  CAN  H14  SING  N  N  41  
6W9  CAN  H15  SING  N  N  42  
6W9  CAQ  H16  SING  N  N  43  
6W9  CAQ  H17  SING  N  N  44  
6W9  OAF  H18  SING  N  N  45  
6W9  OAG  H19  SING  N  N  46  
6W9  CAM  H20  SING  N  N  47  
6W9  CAM  H21  SING  N  N  48  
6W9  CAO  H22  SING  N  N  49  
6W9  CAO  H23  SING  N  N  50  
6W9  C2   H24  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6W9  InChI             InChI                 1.03   "InChI=1S/C13H23N5O7P2/c19-13-11-12(14-9-15-13)18(10-16-11)5-4-17(6-8-27(23,24)25)3-1-2-7-26(20,21)22/h9-10H,1-8H2,(H,14,15,19)(H2,20,21,22)(H2,23,24,25)"  
6W9  InChIKey          InChI                 1.03   UBBYDRJNNDXCEB-UHFFFAOYSA-N  
6W9  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)CCCCN(CCn1cnc2C(=O)NC=Nc12)CC[P](O)(O)=O"  
6W9  SMILES            CACTVS                3.385  "O[P](O)(=O)CCCCN(CCn1cnc2C(=O)NC=Nc12)CC[P](O)(O)=O"  
6W9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1nc2c(n1CCN(CCCCP(=O)(O)O)CCP(=O)(O)O)N=CNC2=O"  
6W9  SMILES            "OpenEye OEToolkits"  2.0.5  "c1nc2c(n1CCN(CCCCP(=O)(O)O)CCP(=O)(O)O)N=CNC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          6W9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "2-[2-(6-oxidanylidene-1~{H}-purin-9-yl)ethyl-(4-phosphonobutyl)amino]ethylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6W9  "Create component"  2016-07-08  RCSB  
6W9  "Modify synonyms"   2016-07-18  RCSB  
6W9  "Initial release"   2017-07-19  RCSB  
6W9  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6W9
_pdbx_chem_comp_synonyms.name        "9-[N-(Phosphonoethyl)-N-(phosphonobutyl)-2-aminoethyl]-hypoxanthine"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
