data_6A9
# 
_chem_comp.id                                    6A9 
_chem_comp.name                                  
; N-9'-methoxynonyl-1-deoxynojirimycin
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H33 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-02-25 
_chem_comp.pdbx_modified_date                    2016-07-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        319.437 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6A9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5IEG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6A9 C10 C1  C 0 1 N N N -3.676 14.001 9.123  4.581  -0.274 0.273  C10 6A9 1  
6A9 C12 C2  C 0 1 N N N -4.951 15.700 7.719  7.073  -0.422 0.380  C12 6A9 2  
6A9 C14 C3  C 0 1 N N N -6.285 19.122 8.154  10.764 -0.083 -0.020 C14 6A9 3  
6A9 C15 C4  C 0 1 N N N 4.074  14.605 7.972  -3.005 -1.230 -0.401 C15 6A9 4  
6A9 O3  O1  O 0 1 N N N 4.665  10.636 9.304  -3.691 2.631  1.199  O3  6A9 5  
6A9 C4  C5  C 0 1 N N N 3.766  10.797 8.197  -3.759 2.457  -0.218 C4  6A9 6  
6A9 C3  C6  C 0 1 N N R 3.921  12.177 7.562  -3.990 0.980  -0.540 C3  6A9 7  
6A9 C2  C7  C 0 1 N N R 5.255  12.229 6.767  -5.261 0.497  0.162  C2  6A9 8  
6A9 O2  O2  O 0 1 N N N 5.237  11.246 5.734  -6.380 1.251  -0.308 O2  6A9 9  
6A9 C1  C8  C 0 1 N N R 5.504  13.616 6.179  -5.477 -0.987 -0.147 C1  6A9 10 
6A9 O1  O3  O 0 1 N N N 6.760  13.639 5.496  -6.631 -1.457 0.551  O1  6A9 11 
6A9 N   N1  N 0 1 N N N 3.866  13.270 8.566  -2.842 0.192  -0.073 N   6A9 12 
6A9 C   C9  C 0 1 N N S 5.427  14.673 7.274  -4.247 -1.778 0.305  C   6A9 13 
6A9 O   O4  O 0 1 N N N 5.671  16.001 6.811  -4.417 -3.157 -0.030 O   6A9 14 
6A9 C5  C10 C 0 1 N N N 2.686  13.263 9.464  -1.584 0.718  -0.621 C5  6A9 15 
6A9 C6  C11 C 0 1 N N N 1.305  13.303 8.800  -0.402 0.022  0.058  C6  6A9 16 
6A9 C7  C12 C 0 1 N N N 0.150  13.324 9.795  0.908  0.570  -0.513 C7  6A9 17 
6A9 C8  C13 C 0 1 N N N -1.146 13.679 9.078  2.089  -0.126 0.165  C8  6A9 18 
6A9 C9  C14 C 0 1 N N N -2.418 13.661 9.919  3.399  0.421  -0.405 C9  6A9 19 
6A9 C11 C15 C 0 1 N N N -3.874 15.473 8.773  5.891  0.273  -0.298 C11 6A9 20 
6A9 C13 C16 C 0 1 N N N -5.946 16.798 8.032  8.383  0.125  -0.190 C13 6A9 21 
6A9 O4  O5  O 0 1 N N N -5.338 18.067 8.108  9.487  -0.524 0.443  O4  6A9 22 
6A9 H1  H1  H 0 1 N N N -4.545 13.677 9.714  4.546  -0.087 1.346  H1  6A9 23 
6A9 H2  H2  H 0 1 N N N -3.641 13.434 8.181  4.525  -1.347 0.089  H2  6A9 24 
6A9 H3  H3  H 0 1 N N N -5.510 14.760 7.597  7.038  -0.235 1.453  H3  6A9 25 
6A9 H4  H4  H 0 1 N N N -4.451 15.955 6.773  7.017  -1.495 0.197  H4  6A9 26 
6A9 H5  H5  H 0 1 N N N -5.758 20.086 8.212  10.849 -0.275 -1.090 H5  6A9 27 
6A9 H6  H6  H 0 1 N N N -6.905 19.098 7.246  10.870 0.985  0.167  H6  6A9 28 
6A9 H7  H7  H 0 1 N N N -6.926 19.000 9.039  11.549 -0.624 0.509  H7  6A9 29 
6A9 H8  H8  H 0 1 N N N 4.038  15.365 8.767  -3.120 -1.343 -1.479 H8  6A9 30 
6A9 H9  H9  H 0 1 N N N 3.278  14.803 7.239  -2.126 -1.782 -0.070 H9  6A9 31 
6A9 H10 H10 H 0 1 N N N 4.551  9.772  9.682  -3.546 3.546  1.477  H10 6A9 32 
6A9 H11 H11 H 0 1 N N N 2.732  10.679 8.553  -4.582 3.049  -0.618 H11 6A9 33 
6A9 H12 H12 H 0 1 N N N 3.984  10.027 7.442  -2.822 2.786  -0.669 H12 6A9 34 
6A9 H13 H13 H 0 1 N N N 3.098  12.317 6.846  -4.100 0.856  -1.617 H13 6A9 35 
6A9 H14 H14 H 0 1 N N N 6.072  12.005 7.469  -5.156 0.633  1.238  H14 6A9 36 
6A9 H15 H15 H 0 1 N N N 5.081  10.389 6.114  -7.222 0.998  0.095  H15 6A9 37 
6A9 H16 H16 H 0 1 N N N 4.701  13.822 5.457  -5.620 -1.118 -1.220 H16 6A9 38 
6A9 H17 H17 H 0 1 N N N 6.908  14.504 5.133  -6.828 -2.392 0.401  H17 6A9 39 
6A9 H19 H19 H 0 1 N N N 6.192  14.421 8.023  -4.127 -1.678 1.384  H19 6A9 40 
6A9 H20 H20 H 0 1 N N N 5.608  16.607 7.540  -3.674 -3.719 0.228  H20 6A9 41 
6A9 H21 H21 H 0 1 N N N 2.736  12.347 10.070 -1.549 0.530  -1.694 H21 6A9 42 
6A9 H22 H22 H 0 1 N N N 2.764  14.142 10.121 -1.528 1.791  -0.437 H22 6A9 43 
6A9 H23 H23 H 0 1 N N N 1.244  14.208 8.178  -0.438 0.209  1.131  H23 6A9 44 
6A9 H24 H24 H 0 1 N N N 1.199  12.412 8.163  -0.458 -1.051 -0.126 H24 6A9 45 
6A9 H25 H25 H 0 1 N N N 0.050  12.332 10.259 0.943  0.382  -1.586 H25 6A9 46 
6A9 H26 H26 H 0 1 N N N 0.353  14.074 10.574 0.963  1.643  -0.330 H26 6A9 47 
6A9 H27 H27 H 0 1 N N N -1.033 14.693 8.666  2.054  0.061  1.238  H27 6A9 48 
6A9 H28 H28 H 0 1 N N N -1.280 12.961 8.255  2.034  -1.199 -0.018 H28 6A9 49 
6A9 H29 H29 H 0 1 N N N -2.538 12.655 10.348 3.455  1.494  -0.222 H29 6A9 50 
6A9 H30 H30 H 0 1 N N N -2.310 14.395 10.731 3.434  0.234  -1.479 H30 6A9 51 
6A9 H31 H31 H 0 1 N N N -2.923 15.873 8.392  5.926  0.086  -1.371 H31 6A9 52 
6A9 H32 H32 H 0 1 N N N -4.160 16.014 9.687  5.947  1.346  -0.115 H32 6A9 53 
6A9 H33 H33 H 0 1 N N N -6.710 16.819 7.241  8.418  -0.062 -1.264 H33 6A9 54 
6A9 H34 H34 H 0 1 N N N -6.424 16.577 8.998  8.439  1.198  -0.007 H34 6A9 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6A9 O1  C1  SING N N 1  
6A9 O2  C2  SING N N 2  
6A9 C1  C2  SING N N 3  
6A9 C1  C   SING N N 4  
6A9 C2  C3  SING N N 5  
6A9 O   C   SING N N 6  
6A9 C   C15 SING N N 7  
6A9 C3  C4  SING N N 8  
6A9 C3  N   SING N N 9  
6A9 C12 C13 SING N N 10 
6A9 C12 C11 SING N N 11 
6A9 C15 N   SING N N 12 
6A9 C13 O4  SING N N 13 
6A9 O4  C14 SING N N 14 
6A9 C4  O3  SING N N 15 
6A9 N   C5  SING N N 16 
6A9 C11 C10 SING N N 17 
6A9 C6  C5  SING N N 18 
6A9 C6  C7  SING N N 19 
6A9 C8  C7  SING N N 20 
6A9 C8  C9  SING N N 21 
6A9 C10 C9  SING N N 22 
6A9 C10 H1  SING N N 23 
6A9 C10 H2  SING N N 24 
6A9 C12 H3  SING N N 25 
6A9 C12 H4  SING N N 26 
6A9 C14 H5  SING N N 27 
6A9 C14 H6  SING N N 28 
6A9 C14 H7  SING N N 29 
6A9 C15 H8  SING N N 30 
6A9 C15 H9  SING N N 31 
6A9 O3  H10 SING N N 32 
6A9 C4  H11 SING N N 33 
6A9 C4  H12 SING N N 34 
6A9 C3  H13 SING N N 35 
6A9 C2  H14 SING N N 36 
6A9 O2  H15 SING N N 37 
6A9 C1  H16 SING N N 38 
6A9 O1  H17 SING N N 39 
6A9 C   H19 SING N N 40 
6A9 O   H20 SING N N 41 
6A9 C5  H21 SING N N 42 
6A9 C5  H22 SING N N 43 
6A9 C6  H23 SING N N 44 
6A9 C6  H24 SING N N 45 
6A9 C7  H25 SING N N 46 
6A9 C7  H26 SING N N 47 
6A9 C8  H27 SING N N 48 
6A9 C8  H28 SING N N 49 
6A9 C9  H29 SING N N 50 
6A9 C9  H30 SING N N 51 
6A9 C11 H31 SING N N 52 
6A9 C11 H32 SING N N 53 
6A9 C13 H33 SING N N 54 
6A9 C13 H34 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6A9 SMILES           ACDLabs              12.01 "C(CCCCCN1CC(C(C(C1CO)O)O)O)CCCOC"                                                                                                
6A9 InChI            InChI                1.03  "InChI=1S/C16H33NO5/c1-22-10-8-6-4-2-3-5-7-9-17-11-14(19)16(21)15(20)13(17)12-18/h13-16,18-21H,2-12H2,1H3/t13-,14+,15-,16-/m1/s1" 
6A9 InChIKey         InChI                1.03  TYTARGBBJQKLAJ-QKPAOTATSA-N                                                                                                       
6A9 SMILES_CANONICAL CACTVS               3.385 "COCCCCCCCCCN1C[C@H](O)[C@@H](O)[C@H](O)[C@H]1CO"                                                                                 
6A9 SMILES           CACTVS               3.385 "COCCCCCCCCCN1C[CH](O)[CH](O)[CH](O)[CH]1CO"                                                                                      
6A9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "COCCCCCCCCCN1C[C@@H]([C@H]([C@@H]([C@H]1CO)O)O)O"                                                                                
6A9 SMILES           "OpenEye OEToolkits" 2.0.4 "COCCCCCCCCCN1CC(C(C(C1CO)O)O)O"                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6A9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-(9-methoxynonyl)piperidine-3,4,5-triol"             
6A9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-(9-methoxynonyl)piperidine-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6A9 "Create component" 2016-02-25 EBI  
6A9 "Initial release"  2016-07-27 RCSB 
# 
