data_5Z9
#

_chem_comp.id                                   5Z9
_chem_comp.name                                 "(2R)-2-methyl-2-oxidanyl-butanenitrile"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C5 H9 N O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-09-03
_chem_comp.pdbx_modified_date                   2022-02-04
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       99.131
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    5Z9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7VB6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
5Z9  N1  N1  N  0  1  N  N  N  -33.053  12.331  66.344  -2.542  -0.602   0.088  N1  5Z9   1  
5Z9  C1  C1  C  0  1  N  N  N  -32.210   9.931  69.175   2.322  -0.549   0.060  C1  5Z9   2  
5Z9  C2  C2  C  0  1  N  N  N  -33.508   9.603  68.466   0.867  -1.018  -0.007  C2  5Z9   3  
5Z9  C3  C3  C  0  1  N  N  R  -34.340  10.842  68.113  -0.062   0.198  -0.013  C3  5Z9   4  
5Z9  C4  C4  C  0  1  N  N  N  -35.654  10.386  67.501   0.241   1.076   1.203  C4  5Z9   5  
5Z9  C5  C5  C  0  1  N  N  N  -33.595  11.692  67.139  -1.462  -0.253   0.044  C5  5Z9   6  
5Z9  O1  O1  O  0  1  N  N  N  -34.509  11.499  69.392   0.148   0.951  -1.209  O1  5Z9   7  
5Z9  H1  H1  H  0  1  N  N  N  -31.667   9.000  69.397   2.543   0.073  -0.807  H1  5Z9   8  
5Z9  H2  H2  H  0  1  N  N  N  -31.591  10.571  68.529   2.475   0.030   0.971  H2  5Z9   9  
5Z9  H3  H3  H  0  1  N  N  N  -32.429  10.460  70.114   2.983  -1.415   0.064  H3  5Z9  10  
5Z9  H4  H4  H  0  1  N  N  N  -34.109   8.955  69.121   0.713  -1.597  -0.918  H4  5Z9  11  
5Z9  H5  H5  H  0  1  N  N  N  -33.271   9.066  67.536   0.646  -1.640   0.861  H5  5Z9  12  
5Z9  H6  H6  H  0  1  N  N  N  -36.198   9.760  68.224   1.277   1.411   1.161  H6  5Z9  13  
5Z9  H7  H7  H  0  1  N  N  N  -36.264  11.265  67.245  -0.421   1.943   1.199  H7  5Z9  14  
5Z9  H8  H8  H  0  1  N  N  N  -35.451   9.803  66.591   0.081   0.502   2.115  H8  5Z9  15  
5Z9  H9  H9  H  0  1  N  N  N  -34.986  10.927  69.982  -0.025   0.456  -2.021  H9  5Z9  16  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
5Z9  N1  C5  TRIP  N  N   1  
5Z9  C5  C3  SING  N  N   2  
5Z9  C4  C3  SING  N  N   3  
5Z9  C3  C2  SING  N  N   4  
5Z9  C3  O1  SING  N  N   5  
5Z9  C2  C1  SING  N  N   6  
5Z9  C1  H1  SING  N  N   7  
5Z9  C1  H2  SING  N  N   8  
5Z9  C1  H3  SING  N  N   9  
5Z9  C2  H4  SING  N  N  10  
5Z9  C2  H5  SING  N  N  11  
5Z9  C4  H6  SING  N  N  12  
5Z9  C4  H7  SING  N  N  13  
5Z9  C4  H8  SING  N  N  14  
5Z9  O1  H9  SING  N  N  15  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
5Z9  InChI             InChI                 1.03   "InChI=1S/C5H9NO/c1-3-5(2,7)4-6/h7H,3H2,1-2H3/t5-/m1/s1"  
5Z9  InChIKey          InChI                 1.03   VMEHOTODTPXCKT-RXMQYKEDSA-N  
5Z9  SMILES_CANONICAL  CACTVS                3.385  "CC[C@@](C)(O)C#N"  
5Z9  SMILES            CACTVS                3.385  "CC[C](C)(O)C#N"  
5Z9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC[C@](C)(C#N)O"  
5Z9  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(C)(C#N)O"  
#
_pdbx_chem_comp_identifier.comp_id          5Z9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R})-2-methyl-2-oxidanyl-butanenitrile"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
5Z9  "Create component"  2021-09-03  PDBJ  
5Z9  "Initial release"   2022-02-09  RCSB  
##
