data_5N9
# 
_chem_comp.id                                    5N9 
_chem_comp.name                                  "~{N}-[[2-(3-chloranyl-4-propan-2-yloxy-phenyl)pyrimidin-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H18 Cl F3 N4 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-13 
_chem_comp.pdbx_modified_date                    2022-07-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.831 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5N9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P4U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5N9 C13  C1  C  0 1 N N N -53.779 -0.189 -7.138  2.279  1.603  -0.916 C13  5N9 1  
5N9 C15  C2  C  0 1 Y N N -51.927 5.478  -9.853  -3.874 -0.399 -1.257 C15  5N9 2  
5N9 C17  C3  C  0 1 Y N N -52.613 6.986  -11.610 -5.885 -0.299 0.043  C17  5N9 3  
5N9 C20  C4  C  0 1 Y N N -54.688 1.750  -8.536  0.128  1.664  0.389  C20  5N9 4  
5N9 C22  C5  C  0 1 Y N N -53.258 3.390  -9.303  -1.770 0.660  -0.440 C22  5N9 5  
5N9 C24  C6  C  0 1 Y N N -52.351 1.686  -8.058  0.139  0.553  -1.722 C24  5N9 6  
5N9 C28  C7  C  0 1 N N N -50.251 8.934  -12.798 -7.615 -2.746 -0.843 C28  5N9 7  
5N9 C02  C8  C  0 1 Y N N -54.141 -2.163 -10.997 6.495  1.767  -0.981 C02  5N9 8  
5N9 C03  C9  C  0 1 Y N N -54.078 -1.562 -9.747  5.116  1.718  -0.963 C03  5N9 9  
5N9 C04  C10 C  0 1 Y N N -52.955 -1.774 -8.953  4.485  0.617  -0.386 C04  5N9 10 
5N9 C05  C11 C  0 1 Y N N -51.952 -2.590 -9.465  5.281  -0.395 0.151  C05  5N9 11 
5N9 C06  C12 C  0 1 Y N N -52.078 -3.159 -10.723 6.653  -0.270 0.093  C06  5N9 12 
5N9 C07  C13 C  0 1 N N N -50.965 -4.051 -11.274 7.525  -1.356 0.669  C07  5N9 13 
5N9 C12  C14 C  0 1 Y N N -53.611 1.114  -7.925  0.820  1.266  -0.746 C12  5N9 14 
5N9 C14  C15 C  0 1 Y N N -53.028 4.677  -10.103 -3.204 0.324  -0.270 C14  5N9 15 
5N9 C16  C16 C  0 1 Y N N -51.720 6.630  -10.602 -5.208 -0.705 -1.099 C16  5N9 16 
5N9 C18  C17 C  0 1 Y N N -53.705 6.168  -11.859 -5.220 0.417  1.031  C18  5N9 17 
5N9 C19  C18 C  0 1 Y N N -53.909 5.017  -11.113 -3.885 0.731  0.877  C19  5N9 18 
5N9 C27  C19 C  0 1 N N N -51.543 9.130  -12.002 -7.852 -1.235 -0.908 C27  5N9 19 
5N9 C29  C20 C  0 1 N N N -52.192 10.494 -12.306 -9.354 -0.952 -0.843 C29  5N9 20 
5N9 F08  F1  F  0 1 N N N -51.408 -5.347 -11.368 8.723  -0.799 1.127  F08  5N9 21 
5N9 F09  F2  F  0 1 N N N -50.598 -3.603 -12.519 6.859  -1.971 1.735  F09  5N9 22 
5N9 F10  F3  F  0 1 N N N -49.894 -4.005 -10.428 7.800  -2.306 -0.320 F10  5N9 23 
5N9 N01  N1  N  0 1 Y N N -53.160 -2.930 -11.440 7.213  0.787  -0.466 N01  5N9 24 
5N9 N11  N2  N  0 1 N N N -52.822 -1.180 -7.622  3.097  0.529  -0.347 N11  5N9 25 
5N9 N21  N3  N  0 1 Y N N -54.473 2.874  -9.209  -1.150 1.348  0.509  N21  5N9 26 
5N9 N23  N4  N  0 1 Y N N -52.214 2.807  -8.744  -1.138 0.265  -1.537 N23  5N9 27 
5N9 O26  O1  O  0 1 N N N -52.451 8.143  -12.405 -7.201 -0.603 0.196  O26  5N9 28 
5N9 CL1  CL1 CL 0 0 N N N -54.862 6.589  -13.149 -6.070 0.922  2.458  CL25 5N9 29 
5N9 H132 H1  H  0 0 N N N -53.599 0.003  -6.070  2.506  1.709  -1.977 H132 5N9 30 
5N9 H131 H2  H  0 0 N N N -54.802 -0.570 -7.275  2.498  2.538  -0.402 H131 5N9 31 
5N9 H151 H3  H  0 0 N N N -51.228 5.207  -9.075  -3.348 -0.715 -2.146 H151 5N9 32 
5N9 H201 H4  H  0 0 N N N -55.683 1.336  -8.464  0.630  2.220  1.167  H201 5N9 33 
5N9 H241 H5  H  0 0 N N N -51.490 1.218  -7.604  0.648  0.229  -2.617 H241 5N9 34 
5N9 H282 H6  H  0 0 N N N -49.517 9.698  -12.501 -6.544 -2.947 -0.889 H282 5N9 35 
5N9 H281 H7  H  0 0 N N N -49.842 7.934  -12.593 -8.018 -3.137 0.091  H281 5N9 36 
5N9 H283 H8  H  0 0 N N N -50.465 9.029  -13.873 -8.112 -3.228 -1.684 H283 5N9 37 
5N9 H021 H9  H  0 0 N N N -55.008 -2.001 -11.619 6.992  2.616  -1.426 H021 5N9 38 
5N9 H031 H10 H  0 0 N N N -54.888 -0.940 -9.396  4.534  2.522  -1.389 H031 5N9 39 
5N9 H051 H11 H  0 0 N N N -51.067 -2.782 -8.877  4.830  -1.264 0.607  H051 5N9 40 
5N9 H161 H12 H  0 0 N N N -50.861 7.253  -10.401 -5.728 -1.261 -1.865 H161 5N9 41 
5N9 H191 H13 H  0 0 N N N -54.759 4.384  -11.322 -3.368 1.287  1.644  H191 5N9 42 
5N9 H271 H14 H  0 0 N N N -51.326 9.061  -10.926 -7.449 -0.844 -1.841 H271 5N9 43 
5N9 H293 H15 H  0 0 N N N -53.116 10.600 -11.718 -9.758 -1.344 0.091  H293 5N9 44 
5N9 H291 H16 H  0 0 N N N -51.493 11.300 -12.039 -9.524 0.123  -0.889 H291 5N9 45 
5N9 H292 H17 H  0 0 N N N -52.431 10.556 -13.378 -9.852 -1.435 -1.684 H292 5N9 46 
5N9 H111 H18 H  0 0 N N N -52.844 -1.938 -6.970  2.671  -0.243 0.058  H111 5N9 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5N9 CL1 C18  SING N N 1  
5N9 C28 C27  SING N N 2  
5N9 F09 C07  SING N N 3  
5N9 O26 C27  SING N N 4  
5N9 O26 C17  SING N N 5  
5N9 C29 C27  SING N N 6  
5N9 C18 C17  DOUB Y N 7  
5N9 C18 C19  SING Y N 8  
5N9 C17 C16  SING Y N 9  
5N9 N01 C02  DOUB Y N 10 
5N9 N01 C06  SING Y N 11 
5N9 F08 C07  SING N N 12 
5N9 C07 C06  SING N N 13 
5N9 C07 F10  SING N N 14 
5N9 C19 C14  DOUB Y N 15 
5N9 C02 C03  SING Y N 16 
5N9 C06 C05  DOUB Y N 17 
5N9 C16 C15  DOUB Y N 18 
5N9 C14 C15  SING Y N 19 
5N9 C14 C22  SING N N 20 
5N9 C03 C04  DOUB Y N 21 
5N9 C05 C04  SING Y N 22 
5N9 C22 N21  DOUB Y N 23 
5N9 C22 N23  SING Y N 24 
5N9 N21 C20  SING Y N 25 
5N9 C04 N11  SING N N 26 
5N9 N23 C24  DOUB Y N 27 
5N9 C20 C12  DOUB Y N 28 
5N9 C24 C12  SING Y N 29 
5N9 C12 C13  SING N N 30 
5N9 N11 C13  SING N N 31 
5N9 C13 H132 SING N N 32 
5N9 C13 H131 SING N N 33 
5N9 C15 H151 SING N N 34 
5N9 C20 H201 SING N N 35 
5N9 C24 H241 SING N N 36 
5N9 C28 H282 SING N N 37 
5N9 C28 H281 SING N N 38 
5N9 C28 H283 SING N N 39 
5N9 C02 H021 SING N N 40 
5N9 C03 H031 SING N N 41 
5N9 C05 H051 SING N N 42 
5N9 C16 H161 SING N N 43 
5N9 C19 H191 SING N N 44 
5N9 C27 H271 SING N N 45 
5N9 C29 H293 SING N N 46 
5N9 C29 H291 SING N N 47 
5N9 C29 H292 SING N N 48 
5N9 N11 H111 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5N9 InChI            InChI                1.03  "InChI=1S/C20H18ClF3N4O/c1-12(2)29-17-4-3-14(7-16(17)21)19-27-10-13(11-28-19)9-26-15-5-6-25-18(8-15)20(22,23)24/h3-8,10-12H,9H2,1-2H3,(H,25,26)" 
5N9 InChIKey         InChI                1.03  FGUVKWPOHXVGKT-UHFFFAOYSA-N                                                                                                                      
5N9 SMILES_CANONICAL CACTVS               3.385 "CC(C)Oc1ccc(cc1Cl)c2ncc(CNc3ccnc(c3)C(F)(F)F)cn2"                                                                                               
5N9 SMILES           CACTVS               3.385 "CC(C)Oc1ccc(cc1Cl)c2ncc(CNc3ccnc(c3)C(F)(F)F)cn2"                                                                                               
5N9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1ccc(cc1Cl)c2ncc(cn2)CNc3ccnc(c3)C(F)(F)F"                                                                                               
5N9 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)Oc1ccc(cc1Cl)c2ncc(cn2)CNc3ccnc(c3)C(F)(F)F"                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           5N9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[[2-(3-chloranyl-4-propan-2-yloxy-phenyl)pyrimidin-5-yl]methyl]-2-(trifluoromethyl)pyridin-4-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5N9 "Create component" 2021-07-13 PDBE 
5N9 "Initial release"  2022-07-27 RCSB 
# 
