data_5E9
# 
_chem_comp.id                                    5E9 
_chem_comp.name                                  "ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H36 F N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        489.580 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5E9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DP5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5E9 C2  C1  C 0 1 N N R N N N -7.873  -7.197  -1.380 1.337  0.731  0.249  C2  5E9 1  
5E9 C3  C2  C 0 1 N N N N N N -9.096  -6.386  -1.779 2.038  1.006  -1.083 C3  5E9 2  
5E9 C4  C3  C 0 1 Y N N N N N -10.277 -6.413  -0.824 3.409  1.575  -0.821 C4  5E9 3  
5E9 C5  C4  C 0 1 Y N N N N N -10.603 -5.263  -0.098 3.560  2.927  -0.575 C5  5E9 4  
5E9 C6  C5  C 0 1 Y N N N N N -11.684 -5.247  0.773  4.817  3.449  -0.334 C6  5E9 5  
5E9 C7  C6  C 0 1 Y N N N N N -12.463 -6.388  0.946  5.924  2.618  -0.340 C7  5E9 6  
5E9 C8  C7  C 0 1 Y N N N N N -12.153 -7.539  0.199  5.771  1.264  -0.586 C8  5E9 7  
5E9 O1  O1  O 0 1 N N N N N N -2.993  -11.065 -3.779 -4.524 -0.382 -1.545 O1  5E9 8  
5E9 N1  N1  N 0 1 N N N N N N -1.664  -9.309  -3.047 -4.376 -2.584 -2.068 N1  5E9 9  
5E9 N2  N2  N 0 1 N N N N N N -4.103  -7.942  2.056  1.483  -4.094 0.344  N2  5E9 10 
5E9 N   N3  N 0 1 N N N N N N -6.959  -8.144  -3.449 -0.909 0.043  1.024  N   5E9 11 
5E9 C   C8  C 0 1 N N N N N N -5.932  -7.466  0.374  1.852  -1.695 0.228  C   5E9 12 
5E9 O   O2  O 0 1 N N N N N N -5.404  -8.368  -0.283 1.299  -1.687 -0.846 O   5E9 13 
5E9 O3  O3  O 0 1 N N N N N N -6.128  -5.860  -7.141 -2.806 2.173  0.187  O3  5E9 14 
5E9 C16 C9  C 0 1 N N N N N N -7.033  -5.879  -6.319 -3.749 2.236  0.952  C16 5E9 15 
5E9 O2  O4  O 0 1 N N N N N N -7.359  -4.645  -5.659 -4.618 3.263  0.868  O2  5E9 16 
5E9 C18 C10 C 0 1 N N N N N N -7.366  -3.523  -6.534 -4.366 4.257  -0.160 C18 5E9 17 
5E9 C19 C11 C 0 1 N N N N N N -8.522  -3.685  -7.515 -5.449 5.336  -0.102 C19 5E9 18 
5E9 C15 C12 C 0 1 N N N N N N -7.838  -7.116  -5.993 -3.941 1.192  1.969  C15 5E9 19 
5E9 C14 C13 C 0 1 N N N N N N -6.964  -8.351  -5.834 -3.128 0.139  2.003  C14 5E9 20 
5E9 C10 C14 C 0 1 N N S N N N -6.048  -8.125  -4.630 -2.327 -0.235 0.783  C10 5E9 21 
5E9 C11 C15 C 0 1 N N N N N N -4.958  -9.152  -4.525 -2.511 -1.725 0.489  C11 5E9 22 
5E9 C12 C16 C 0 1 N N S N N N -3.955  -8.904  -3.370 -3.981 -2.004 0.168  C12 5E9 23 
5E9 C26 C17 C 0 1 N N N N N N -3.206  -7.577  -3.408 -4.249 -3.529 0.132  C26 5E9 24 
5E9 C25 C18 C 0 1 N N N N N N -1.765  -7.860  -2.931 -4.075 -3.840 -1.371 C25 5E9 25 
5E9 C13 C19 C 0 1 N N N N N N -2.829  -9.896  -3.409 -4.325 -1.536 -1.229 C13 5E9 26 
5E9 C17 C20 C 0 1 N N N N N N -6.935  -7.120  -2.571 -0.094 0.335  -0.009 C17 5E9 27 
5E9 O4  O5  O 0 1 N N N N N N -6.168  -6.162  -2.682 -0.512 0.278  -1.146 O4  5E9 28 
5E9 C21 C21 C 0 1 N N N N N N -7.221  -6.748  -0.040 2.057  -0.405 0.979  C21 5E9 29 
5E9 C20 C22 C 0 1 N N S N N N -5.211  -7.014  1.652  2.336  -2.995 0.816  C20 5E9 30 
5E9 C22 C23 C 0 1 N N N N N N -4.636  -5.595  1.473  3.780  -3.246 0.379  C22 5E9 31 
5E9 C24 C24 C 0 1 N N N N N N -3.755  -5.491  0.227  4.689  -2.170 0.977  C24 5E9 32 
5E9 C23 C25 C 0 1 N N N N N N -3.865  -5.147  2.706  4.230  -4.624 0.869  C23 5E9 33 
5E9 C9  C26 C 0 1 Y N N N N N -11.062 -7.538  -0.682 4.513  0.743  -0.821 C9  5E9 34 
5E9 F1  F1  F 0 1 N N N N N N -13.530 -6.373  1.784  7.153  3.128  -0.105 F1  5E9 35 
5E9 H1  H1  H 0 1 N N N N N N -8.185  -8.245  -1.261 1.360  1.630  0.864  H1  5E9 36 
5E9 H2  H2  H 0 1 N N N N N N -8.780  -5.338  -1.887 2.131  0.076  -1.643 H2  5E9 37 
5E9 H3  H3  H 0 1 N N N N N N -9.445  -6.766  -2.751 1.452  1.721  -1.661 H3  5E9 38 
5E9 H4  H4  H 0 1 N N N N N N -10.004 -4.372  -0.217 2.696  3.575  -0.571 H4  5E9 39 
5E9 H5  H5  H 0 1 N N N N N N -11.922 -4.346  1.319  4.935  4.505  -0.142 H5  5E9 40 
5E9 H6  H6  H 0 1 N N N N N N -12.758 -8.427  0.304  6.634  0.615  -0.591 H6  5E9 41 
5E9 H7  H7  H 0 1 N N N N N N -0.820  -9.818  -2.877 -4.581 -2.519 -3.014 H7  5E9 42 
5E9 H8  H8  H 0 1 N N N N N N -3.670  -7.601  2.890  0.536  -3.985 0.674  H8  5E9 43 
5E9 H9  H9  H 0 1 N N N N N N -4.477  -8.854  2.223  1.509  -4.165 -0.663 H9  5E9 44 
5E9 H11 H11 H 0 1 N N N N N N -7.584  -8.912  -3.309 -0.557 0.018  1.928  H11 5E9 45 
5E9 H12 H12 H 0 1 N N N N N N -6.415  -3.476  -7.085 -3.390 4.712  0.006  H12 5E9 46 
5E9 H13 H13 H 0 1 N N N N N N -7.499  -2.599  -5.952 -4.382 3.779  -1.140 H13 5E9 47 
5E9 H14 H14 H 0 1 N N N N N N -8.544  -2.826  -8.201 -6.425 4.881  -0.268 H14 5E9 48 
5E9 H15 H15 H 0 1 N N N N N N -8.386  -4.612  -8.092 -5.433 5.814  0.878  H15 5E9 49 
5E9 H16 H16 H 0 1 N N N N N N -9.470  -3.735  -6.959 -5.260 6.082  -0.873 H16 5E9 50 
5E9 H17 H17 H 0 1 N N N N N N -8.913  -7.122  -5.885 -4.742 1.279  2.688  H17 5E9 51 
5E9 H19 H19 H 0 1 N N N N N N -6.986  -9.231  -6.460 -3.041 -0.447 2.906  H19 5E9 52 
5E9 H21 H21 H 0 1 N N N N N N -5.593  -7.128  -4.718 -2.671 0.349  -0.071 H21 5E9 53 
5E9 H22 H22 H 0 1 N N N N N N -5.426  -10.135 -4.370 -1.894 -2.007 -0.364 H22 5E9 54 
5E9 H23 H23 H 0 1 N N N N N N -4.398  -9.158  -5.472 -2.213 -2.307 1.361  H23 5E9 55 
5E9 H24 H24 H 0 1 N N N N N N -4.488  -8.991  -2.412 -4.629 -1.520 0.900  H24 5E9 56 
5E9 H25 H25 H 0 1 N N N N N N -3.194  -7.179  -4.433 -3.514 -4.068 0.730  H25 5E9 57 
5E9 H26 H26 H 0 1 N N N N N N -3.690  -6.850  -2.739 -5.262 -3.756 0.464  H26 5E9 58 
5E9 H27 H27 H 0 1 N N N N N N -1.029  -7.359  -3.576 -4.774 -4.619 -1.678 H27 5E9 59 
5E9 H28 H28 H 0 1 N N N N N N -1.621  -7.535  -1.890 -3.050 -4.150 -1.576 H28 5E9 60 
5E9 H29 H29 H 0 1 N N N N N N -6.993  -5.675  -0.124 3.123  -0.183 1.035  H29 5E9 61 
5E9 H30 H30 H 0 1 N N N N N N -7.961  -6.904  0.759  1.653  -0.503 1.987  H30 5E9 62 
5E9 H31 H31 H 0 1 N N N N N N -5.950  -6.980  2.466  2.290  -2.941 1.904  H31 5E9 63 
5E9 H32 H32 H 0 1 N N N N N N -5.485  -4.908  1.340  3.842  -3.209 -0.709 H32 5E9 64 
5E9 H33 H33 H 0 1 N N N N N N -3.366  -4.466  0.137  4.519  -2.109 2.052  H33 5E9 65 
5E9 H34 H34 H 0 1 N N N N N N -2.915  -6.196  0.312  5.731  -2.428 0.788  H34 5E9 66 
5E9 H35 H35 H 0 1 N N N N N N -4.351  -5.737  -0.665 4.463  -1.207 0.519  H35 5E9 67 
5E9 H36 H36 H 0 1 N N N N N N -4.511  -5.228  3.593  3.583  -5.390 0.442  H36 5E9 68 
5E9 H37 H37 H 0 1 N N N N N N -2.980  -5.787  2.838  5.259  -4.802 0.557  H37 5E9 69 
5E9 H38 H38 H 0 1 N N N N N N -3.546  -4.102  2.579  4.168  -4.660 1.957  H38 5E9 70 
5E9 H39 H39 H 0 1 N N N N N N -10.835 -8.425  -1.254 4.393  -0.314 -1.009 H39 5E9 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5E9 C19 C18 SING N N 1  
5E9 O3  C16 DOUB N N 2  
5E9 C18 O2  SING N N 3  
5E9 C16 C15 SING N N 4  
5E9 C16 O2  SING N N 5  
5E9 C15 C14 DOUB N Z 6  
5E9 C14 C10 SING N N 7  
5E9 C10 C11 SING N N 8  
5E9 C10 N   SING N N 9  
5E9 C11 C12 SING N N 10 
5E9 O1  C13 DOUB N N 11 
5E9 N   C17 SING N N 12 
5E9 C13 C12 SING N N 13 
5E9 C13 N1  SING N N 14 
5E9 C26 C12 SING N N 15 
5E9 C26 C25 SING N N 16 
5E9 N1  C25 SING N N 17 
5E9 O4  C17 DOUB N N 18 
5E9 C17 C2  SING N N 19 
5E9 C3  C2  SING N N 20 
5E9 C3  C4  SING N N 21 
5E9 C2  C21 SING N N 22 
5E9 C4  C9  DOUB Y N 23 
5E9 C4  C5  SING Y N 24 
5E9 C9  C8  SING Y N 25 
5E9 O   C   DOUB N N 26 
5E9 C5  C6  DOUB Y N 27 
5E9 C21 C   SING N N 28 
5E9 C8  C7  DOUB Y N 29 
5E9 C24 C22 SING N N 30 
5E9 C   C20 SING N N 31 
5E9 C6  C7  SING Y N 32 
5E9 C7  F1  SING N N 33 
5E9 C22 C20 SING N N 34 
5E9 C22 C23 SING N N 35 
5E9 C20 N2  SING N N 36 
5E9 C2  H1  SING N N 37 
5E9 C3  H2  SING N N 38 
5E9 C3  H3  SING N N 39 
5E9 C5  H4  SING N N 40 
5E9 C6  H5  SING N N 41 
5E9 C8  H6  SING N N 42 
5E9 N1  H7  SING N N 43 
5E9 N2  H8  SING N N 44 
5E9 N2  H9  SING N N 45 
5E9 N   H11 SING N N 46 
5E9 C18 H12 SING N N 47 
5E9 C18 H13 SING N N 48 
5E9 C19 H14 SING N N 49 
5E9 C19 H15 SING N N 50 
5E9 C19 H16 SING N N 51 
5E9 C15 H17 SING N N 52 
5E9 C14 H19 SING N N 53 
5E9 C10 H21 SING N N 54 
5E9 C11 H22 SING N N 55 
5E9 C11 H23 SING N N 56 
5E9 C12 H24 SING N N 57 
5E9 C26 H25 SING N N 58 
5E9 C26 H26 SING N N 59 
5E9 C25 H27 SING N N 60 
5E9 C25 H28 SING N N 61 
5E9 C21 H29 SING N N 62 
5E9 C21 H30 SING N N 63 
5E9 C20 H31 SING N N 64 
5E9 C22 H32 SING N N 65 
5E9 C24 H33 SING N N 66 
5E9 C24 H34 SING N N 67 
5E9 C24 H35 SING N N 68 
5E9 C23 H36 SING N N 69 
5E9 C23 H37 SING N N 70 
5E9 C23 H38 SING N N 71 
5E9 C9  H39 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5E9 SMILES           ACDLabs              12.01 "C(CC(C(N)C(C)C)=O)(Cc1ccc(cc1)F)C(NC(/C=C\C(=O)OCC)CC2CCNC2=O)=O"                                                                                                                                               
5E9 InChI            InChI                1.03  "InChI=1S/C26H36FN3O5/c1-4-35-23(32)10-9-21(14-18-11-12-29-25(18)33)30-26(34)19(15-22(31)24(28)16(2)3)13-17-5-7-20(27)8-6-17/h5-10,16,18-19,21,24H,4,11-15,28H2,1-3H3,(H,29,33)(H,30,34)/t18-,19+,21+,24-/m0/s1" 
5E9 InChIKey         InChI                1.03  XNNMMJDBDBVGGO-HSJYVMOXSA-N                                                                                                                                                                                      
5E9 SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)\C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H](CC(=O)[C@@H](N)C(C)C)Cc2ccc(F)cc2"                                                                                                                              
5E9 SMILES           CACTVS               3.385 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC(=O)[CH](N)C(C)C)Cc2ccc(F)cc2"                                                                                                                                       
5E9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](Cc2ccc(cc2)F)CC(=O)[C@H](C(C)C)N"                                                                                                                                  
5E9 SMILES           "OpenEye OEToolkits" 1.9.2 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(Cc2ccc(cc2)F)CC(=O)C(C(C)C)N"                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5E9 "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (2Z,4S)-4-{[(2R,5S)-5-amino-2-(4-fluorobenzyl)-6-methyl-4-oxoheptanoyl]amino}-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"                            
5E9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "ethyl (4S)-4-[[(2R,5S)-5-azanyl-2-[(4-fluorophenyl)methyl]-6-methyl-4-oxidanylidene-heptanoyl]amino]-5-[(3S)-2-oxidanylidenepyrrolidin-3-yl]pent-2-enoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5E9 "Create component" 2015-09-16 RCSB 
5E9 "Initial release"  2016-03-30 RCSB 
5E9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5E9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C14 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
