data_4C9
# 
_chem_comp.id                                    4C9 
_chem_comp.name                                  "(2S)-2-({(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}carbonyl)-4,4-dimethylpentanenitrile" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H33 N7 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-02-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        523.629 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4C9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4YHF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4C9 C1  C11  C 0 1 N N N N N N -2.415 0.205  -38.259 6.931   1.368  -1.318 C11  4C9 1  
4C9 C2  C12  C 0 1 N N N N N N -1.616 0.433  -39.907 8.329   1.823  -0.895 C12  4C9 2  
4C9 C3  C15  C 0 1 N N N N N N -2.704 0.287  -41.066 9.042   0.677  -0.174 C15  4C9 3  
4C9 C4  C16  C 0 1 N N N N N N -4.561 -1.304 -38.343 6.620   -0.085 0.632  C16  4C9 4  
4C9 C5  C25  C 0 1 Y N N N N N 0.309  0.563  -27.451 -4.114  -1.082 1.102  C25  4C9 5  
4C9 C6  C26  C 0 1 Y N N N N N 1.317  1.172  -26.693 -5.352  -0.519 1.332  C26  4C9 6  
4C9 C7  C29  C 0 1 Y N N N N N 3.389  4.119  -26.351 -7.541  1.684  0.305  C29  4C9 7  
4C9 C8  C34  C 0 1 Y N N N N N 4.728  4.546  -26.348 -8.823  2.182  0.491  C34  4C9 8  
4C9 N1  N39  N 0 1 Y N N N N N -4.903 -0.006 -28.809 -1.633  -4.099 -1.540 N39  4C9 9  
4C9 N2  N01  N 0 1 N N N N N N -3.366 0.956  -27.369 -3.615  -2.940 -1.007 N01  4C9 10 
4C9 C9  C02  C 0 1 Y N N N N N -3.579 0.349  -28.571 -2.241  -3.069 -0.960 C02  4C9 11 
4C9 C10 C03  C 0 1 Y N N N N N -2.544 0.091  -29.525 -1.450  -2.115 -0.297 C03  4C9 12 
4C9 C11 C04  C 0 1 Y N N N N N -3.022 -0.548 -30.703 -0.055  -2.295 -0.278 C04  4C9 13 
4C9 N3  N05  N 0 1 Y N N N N N -1.881 -0.780 -31.529 0.470   -1.247 0.418  N05  4C9 14 
4C9 C12 C06  C 0 1 N N R N N N -1.877 -1.338 -32.901 1.895   -1.034 0.681  C06  4C9 15 
4C9 C13 C07  C 0 1 N N N N N N -2.370 -0.293 -33.928 2.334   0.301  0.073  C07  4C9 16 
4C9 N4  N08  N 0 1 N N N N N N -2.258 -0.731 -35.341 3.728   0.560  0.456  N08  4C9 17 
4C9 C14 C09  C 0 1 N N N N N N -3.268 -0.635 -36.267 4.659   0.829  -0.481 C09  4C9 18 
4C9 C15 C10  C 0 1 N N S N N N -3.301 -0.952 -37.774 6.086   1.092  -0.072 C10  4C9 19 
4C9 C16 C13  C 0 1 N N N N N N -0.430 -0.731 -40.067 9.131   2.223  -2.135 C13  4C9 20 
4C9 C17 C14  C 0 1 N N N N N N -0.931 1.896  -39.976 8.212   3.023  0.046  C14  4C9 21 
4C9 N5  N17  N 0 1 N N N N N N -5.602 -1.581 -38.843 7.031   -0.993 1.176  N17  4C9 22 
4C9 O1  O18  O 0 1 N N N N N N -4.369 -0.155 -35.870 4.349   0.859  -1.653 O18  4C9 23 
4C9 C18 C19  C 0 1 N N N N N N -0.904 -1.253 -35.654 4.089   0.521  1.880  C19  4C9 24 
4C9 C19 C20  C 0 1 N N N N N N -0.473 -2.324 -34.682 3.631   -0.817 2.468  C20  4C9 25 
4C9 C20 C21  C 0 1 N N N N N N -0.436 -1.714 -33.319 2.137   -1.006 2.192  C21  4C9 26 
4C9 N6  N22  N 0 1 Y N N N N N -0.752 -0.234 -30.919 -0.564  -0.405 0.842  N22  4C9 27 
4C9 C21 C23  C 0 1 Y N N N N N -1.068 0.285  -29.697 -1.719  -0.881 0.441  C23  4C9 28 
4C9 C22 C24  C 0 1 Y N N N N N -0.012 0.902  -28.783 -3.051  -0.280 0.689  C24  4C9 29 
4C9 C23 C27  C 0 1 Y N N N N N 2.134  2.187  -27.183 -5.540  0.845  1.152  C27  4C9 30 
4C9 O2  O28  O 0 1 N N N N N N 3.122  2.730  -26.348 -6.761  1.397  1.380  O28  4C9 31 
4C9 C24 C30  C 0 1 Y N N N N N 2.384  5.117  -26.347 -7.060  1.475  -0.979 C30  4C9 32 
4C9 C25 C31  C 0 1 Y N N N N N 2.753  6.467  -26.343 -7.858  1.763  -2.070 C31  4C9 33 
4C9 C26 C32  C 0 1 Y N N N N N 4.080  6.887  -26.341 -9.135  2.258  -1.882 C32  4C9 34 
4C9 C27 C33  C 0 1 Y N N N N N 5.070  5.904  -26.343 -9.615  2.472  -0.603 C33  4C9 35 
4C9 C28 C35  C 0 1 Y N N N N N 1.866  2.556  -28.515 -4.483  1.647  0.741  C35  4C9 36 
4C9 C29 C36  C 0 1 Y N N N N N 0.840  1.927  -29.264 -3.243  1.090  0.510  C36  4C9 37 
4C9 N7  N37  N 0 1 Y N N N N N -4.325 -0.914 -30.973 0.461   -3.362 -0.889 N37  4C9 38 
4C9 C30 C38  C 0 1 Y N N N N N -5.202 -0.608 -29.976 -0.319  -4.228 -1.498 C38  4C9 39 
4C9 H1  H111 H 0 1 N N N N N N -3.038 1.102  -38.129 6.458   2.150  -1.912 H111 4C9 40 
4C9 H3  H151 H 0 1 N N N N N N -3.476 1.061  -40.944 8.910   -0.245 -0.739 H151 4C9 41 
4C9 H4  H152 H 0 1 N N N N N N -2.216 0.407  -42.044 10.105  0.905  -0.093 H152 4C9 42 
4C9 H5  H153 H 0 1 N N N N N N -3.170 -0.708 -41.008 8.619   0.556  0.823  H153 4C9 43 
4C9 H6  H251 H 0 1 N N N N N N -0.264 -0.223 -26.982 -3.968  -2.142 1.246  H251 4C9 44 
4C9 H7  H261 H 0 1 N N N N N N 1.468  0.837  -25.677 -6.176  -1.140 1.651  H261 4C9 45 
4C9 H8  H341 H 0 1 N N N N N N 5.515  3.806  -26.350 -9.202  2.341  1.490  H341 4C9 46 
4C9 H9  H011 H 0 1 N N N N N N -4.232 1.031  -26.875 -4.162  -3.678 -1.319 H011 4C9 47 
4C9 H10 H012 H 0 1 N N N N N N -2.721 0.413  -26.831 -4.035  -2.111 -0.728 H012 4C9 48 
4C9 H11 H061 H 0 1 N N N N N N -2.517 -2.231 -32.952 2.472   -1.844 0.235  H061 4C9 49 
4C9 H12 H071 H 0 1 N N N N N N -3.427 -0.074 -33.717 2.256   0.251  -1.013 H071 4C9 50 
4C9 H13 H072 H 0 1 N N N N N N -1.774 0.623  -33.802 1.697   1.101  0.450  H072 4C9 51 
4C9 H15 H131 H 0 1 N N N N N N 0.310  -0.615 -39.261 8.623   3.039  -2.649 H131 4C9 52 
4C9 H16 H132 H 0 1 N N N N N N -0.886 -1.730 -40.005 10.127  2.547  -1.834 H132 4C9 53 
4C9 H17 H133 H 0 1 N N N N N N 0.068  -0.615 -41.041 9.215   1.368  -2.805 H133 4C9 54 
4C9 H18 H141 H 0 1 N N N N N N -0.183 1.989  -39.175 7.640   2.738  0.929  H141 4C9 55 
4C9 H19 H142 H 0 1 N N N N N N -0.441 2.026  -40.952 9.208   3.348  0.347  H142 4C9 56 
4C9 H20 H143 H 0 1 N N N N N N -1.703 2.669  -39.848 7.704   3.840  -0.468 H143 4C9 57 
4C9 H21 H191 H 0 1 N N N N N N -0.913 -1.677 -36.669 5.170   0.616  1.986  H191 4C9 58 
4C9 H22 H192 H 0 1 N N N N N N -0.184 -0.422 -35.610 3.595   1.339  2.404  H192 4C9 59 
4C9 H23 H201 H 0 1 N N N N N N -1.191 -3.157 -34.700 4.192   -1.629 2.005  H201 4C9 60 
4C9 H24 H202 H 0 1 N N N N N N 0.526  -2.696 -34.953 3.805   -0.820 3.544  H202 4C9 61 
4C9 H25 H211 H 0 1 N N N N N N 0.192  -0.811 -33.335 1.579   -0.181 2.634  H211 4C9 62 
4C9 H26 H212 H 0 1 N N N N N N -0.020 -2.437 -32.602 1.803   -1.946 2.631  H212 4C9 63 
4C9 H27 H301 H 0 1 N N N N N N 1.341  4.838  -26.347 -6.062  1.089  -1.126 H301 4C9 64 
4C9 H28 H311 H 0 1 N N N N N N 1.974  7.215  -26.341 -7.483  1.600  -3.070 H311 4C9 65 
4C9 H29 H321 H 0 1 N N N N N N 4.334  7.937  -26.338 -9.757  2.482  -2.736 H321 4C9 66 
4C9 H30 H331 H 0 1 N N N N N N 6.111  6.193  -26.341 -10.613 2.859  -0.460 H331 4C9 67 
4C9 H31 H351 H 0 1 N N N N N N 2.455  3.335  -28.976 -4.633  2.707  0.603  H351 4C9 68 
4C9 H32 H361 H 0 1 N N N N N N 0.696  2.255  -30.283 -2.421  1.714  0.191  H361 4C9 69 
4C9 H33 H381 H 0 1 N N N N N N -6.236 -0.874 -30.137 0.134   -5.081 -1.982 H381 4C9 70 
4C9 H34 H101 H 0 1 N N N N N N -2.668 -1.846 -37.880 6.120   1.958  0.589  H101 4C9 71 
4C9 H35 HXT  H 0 1 N N N N N N -1.581 0.231  -37.543 7.009   0.458  -1.912 HXT  4C9 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4C9 C1  C15 SING N N 1  
4C9 C2  C3  SING N N 2  
4C9 C2  C16 SING N N 3  
4C9 C2  C17 SING N N 4  
4C9 C4  C15 SING N N 5  
4C9 C4  N5  TRIP N N 6  
4C9 C5  C6  DOUB Y N 7  
4C9 C5  C22 SING Y N 8  
4C9 C6  C23 SING Y N 9  
4C9 C7  C8  DOUB Y N 10 
4C9 C7  O2  SING N N 11 
4C9 C7  C24 SING Y N 12 
4C9 C8  C27 SING Y N 13 
4C9 N1  C9  DOUB Y N 14 
4C9 N1  C30 SING Y N 15 
4C9 N2  C9  SING N N 16 
4C9 C9  C10 SING Y N 17 
4C9 C10 C11 DOUB Y N 18 
4C9 C10 C21 SING Y N 19 
4C9 C11 N3  SING Y N 20 
4C9 C11 N7  SING Y N 21 
4C9 N3  C12 SING N N 22 
4C9 N3  N6  SING Y N 23 
4C9 C12 C13 SING N N 24 
4C9 C12 C20 SING N N 25 
4C9 C13 N4  SING N N 26 
4C9 N4  C14 SING N N 27 
4C9 N4  C18 SING N N 28 
4C9 C14 C15 SING N N 29 
4C9 C14 O1  DOUB N N 30 
4C9 C18 C19 SING N N 31 
4C9 C19 C20 SING N N 32 
4C9 N6  C21 DOUB Y N 33 
4C9 C21 C22 SING N N 34 
4C9 C22 C29 DOUB Y N 35 
4C9 C23 O2  SING N N 36 
4C9 C23 C28 DOUB Y N 37 
4C9 C24 C25 DOUB Y N 38 
4C9 C25 C26 SING Y N 39 
4C9 C26 C27 DOUB Y N 40 
4C9 C28 C29 SING Y N 41 
4C9 N7  C30 DOUB Y N 42 
4C9 C1  C2  SING N N 43 
4C9 C1  H1  SING N N 44 
4C9 C3  H3  SING N N 45 
4C9 C3  H4  SING N N 46 
4C9 C3  H5  SING N N 47 
4C9 C5  H6  SING N N 48 
4C9 C6  H7  SING N N 49 
4C9 C8  H8  SING N N 50 
4C9 N2  H9  SING N N 51 
4C9 N2  H10 SING N N 52 
4C9 C12 H11 SING N N 53 
4C9 C13 H12 SING N N 54 
4C9 C13 H13 SING N N 55 
4C9 C16 H15 SING N N 56 
4C9 C16 H16 SING N N 57 
4C9 C16 H17 SING N N 58 
4C9 C17 H18 SING N N 59 
4C9 C17 H19 SING N N 60 
4C9 C17 H20 SING N N 61 
4C9 C18 H21 SING N N 62 
4C9 C18 H22 SING N N 63 
4C9 C19 H23 SING N N 64 
4C9 C19 H24 SING N N 65 
4C9 C20 H25 SING N N 66 
4C9 C20 H26 SING N N 67 
4C9 C24 H27 SING N N 68 
4C9 C25 H28 SING N N 69 
4C9 C26 H29 SING N N 70 
4C9 C27 H30 SING N N 71 
4C9 C28 H31 SING N N 72 
4C9 C29 H32 SING N N 73 
4C9 C30 H33 SING N N 74 
4C9 C15 H34 SING N N 75 
4C9 C1  H35 SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4C9 SMILES           ACDLabs              12.01 "N#CC(C(=O)N5CCCC(n2nc(c1c(ncnc12)N)c4ccc(Oc3ccccc3)cc4)C5)CC(C)(C)C"                                                                                                                                                   
4C9 InChI            InChI                1.03  "InChI=1S/C30H33N7O2/c1-30(2,3)16-21(17-31)29(38)36-15-7-8-22(18-36)37-28-25(27(32)33-19-34-28)26(35-37)20-11-13-24(14-12-20)39-23-9-5-4-6-10-23/h4-6,9-14,19,21-22H,7-8,15-16,18H2,1-3H3,(H2,32,33,34)/t21-,22-/m1/s1" 
4C9 InChIKey         InChI                1.03  DZSBLWYJPNCWLI-FGZHOGPDSA-N                                                                                                                                                                                             
4C9 SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)C[C@@H](C#N)C(=O)N1CCC[C@H](C1)n2nc(c3ccc(Oc4ccccc4)cc3)c5c(N)ncnc25"                                                                                                                                          
4C9 SMILES           CACTVS               3.385 "CC(C)(C)C[CH](C#N)C(=O)N1CCC[CH](C1)n2nc(c3ccc(Oc4ccccc4)cc3)c5c(N)ncnc25"                                                                                                                                             
4C9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)CC(C#N)C(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N"                                                                                                                                             
4C9 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(C)CC(C#N)C(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N"                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4C9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-({(3R)-3-[4-amino-3-(4-phenoxyphenyl)-1H-pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl}carbonyl)-4,4-dimethylpentanenitrile" 
4C9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[(3R)-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]carbonyl-4,4-dimethyl-pentanenitrile"          
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4C9 "Create component"   2015-02-27 EBI  
4C9 "Other modification" 2015-02-28 EBI  
4C9 "Initial release"    2015-05-13 RCSB 
4C9 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4C9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
