data_3Y9
# 
_chem_comp.id                                    3Y9 
_chem_comp.name                                  "N-{4-[4-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]benzoyl}-L-glutamic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H25 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-10 
_chem_comp.pdbx_modified_date                    2016-04-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        455.464 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3Y9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X73 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3Y9 C13 C1  C 0 1 Y N N 62.615 11.654 -20.005 2.372   1.663  1.530  C13 3Y9 1  
3Y9 C15 C2  C 0 1 Y N N 62.420 10.346 -20.448 1.041   1.336  1.692  C15 3Y9 2  
3Y9 C17 C3  C 0 1 N N N 64.173 13.478 -19.088 4.629   1.183  0.592  C17 3Y9 3  
3Y9 C20 C4  C 0 1 N N S 66.031 15.192 -19.085 6.843   0.725  -0.318 C20 3Y9 4  
3Y9 C21 C5  C 0 1 N N N 67.487 15.091 -18.693 7.645   -0.546 -0.603 C21 3Y9 5  
3Y9 N1  N1  N 0 1 N N N 63.205 10.775 -27.366 -8.477  -1.495 -1.120 N1  3Y9 6  
3Y9 C6  C6  C 0 1 Y N N 64.688 8.366  -25.159 -5.497  0.394  -0.595 C6  3Y9 7  
3Y9 C7  C7  C 0 1 Y N N 63.693 7.714  -25.849 -6.363  1.062  0.184  C7  3Y9 8  
3Y9 C8  C8  C 0 1 Y N N 63.002 8.497  -26.757 -7.650  0.381  0.061  C8  3Y9 9  
3Y9 C9  C9  C 0 1 Y N N 63.631 9.742  -26.614 -7.447  -0.689 -0.822 C9  3Y9 10 
3Y9 C14 C10 C 0 1 Y N N 64.930 11.145 -19.560 2.685   -0.322 0.193  C14 3Y9 11 
3Y9 C16 C11 C 0 1 Y N N 64.736 9.849  -19.997 1.351   -0.636 0.359  C16 3Y9 12 
3Y9 C2  C12 C 0 1 N N N 62.195 10.638 -28.228 -9.667  -1.298 -0.601 C2  3Y9 13 
3Y9 N3  N2  N 0 1 N N N 61.584 9.454  -28.381 -9.922  -0.274 0.262  N3  3Y9 14 
3Y9 C4  C13 C 0 1 N N N 61.961 8.388  -27.654 -8.935  0.582  0.612  C4  3Y9 15 
3Y9 N5  N3  N 0 1 Y N N 64.599 9.597  -25.688 -6.138  -0.657 -1.202 N5  3Y9 16 
3Y9 O10 O1  O 0 1 N N N 61.377 7.321  -27.815 -9.149  1.502  1.383  O10 3Y9 17 
3Y9 N11 N4  N 0 1 N N N 61.766 11.746 -29.008 -10.688 -2.151 -0.940 N11 3Y9 18 
3Y9 C12 C14 C 0 1 Y N N 63.872 12.042 -19.547 3.204   0.835  0.775  C12 3Y9 19 
3Y9 O18 O2  O 0 1 N N N 63.332 14.199 -18.585 5.079   2.191  1.100  O18 3Y9 20 
3Y9 N19 N5  N 0 1 N N N 65.504 13.909 -19.359 5.430   0.381  -0.137 N19 3Y9 21 
3Y9 C22 C15 C 0 1 N N N 67.664 14.566 -17.286 7.605   -1.460 0.623  C22 3Y9 22 
3Y9 C23 C16 C 0 1 N N N 69.110 14.783 -16.891 8.395   -2.712 0.342  C23 3Y9 23 
3Y9 O24 O3  O 0 1 N N N 69.461 14.727 -15.682 8.500   -3.665 1.282  O24 3Y9 24 
3Y9 O25 O4  O 0 1 N N N 69.969 15.019 -17.782 8.935   -2.858 -0.729 O25 3Y9 25 
3Y9 C26 C17 C 0 1 N N N 65.970 15.960 -20.389 6.983   1.679  -1.477 C26 3Y9 26 
3Y9 O27 O5  O 0 1 N N N 65.432 15.432 -21.402 6.004   2.034  -2.089 O27 3Y9 27 
3Y9 O28 O6  O 0 1 N N N 66.468 17.116 -20.476 8.196   2.133  -1.829 O28 3Y9 28 
3Y9 C29 C18 C 0 1 N N N 65.627 7.843  -24.092 -4.042  0.745  -0.777 C29 3Y9 29 
3Y9 C30 C19 C 0 1 N N N 65.137 8.310  -22.721 -3.221  0.113  0.348  C30 3Y9 30 
3Y9 C31 C20 C 0 1 N N N 63.767 7.734  -22.368 -1.744  0.470  0.164  C31 3Y9 31 
3Y9 C32 C21 C 0 1 N N N 63.323 8.035  -20.936 -0.923  -0.162 1.289  C32 3Y9 32 
3Y9 C33 C22 C 0 1 Y N N 63.485 9.452  -20.439 0.532   0.190  1.108  C33 3Y9 33 
3Y9 H1  H1  H 0 1 N N N 61.798 12.360 -20.017 2.767   2.560  1.982  H1  3Y9 34 
3Y9 H2  H2  H 0 1 N N N 61.448 10.029 -20.796 0.396   1.975  2.276  H2  3Y9 35 
3Y9 H3  H3  H 0 1 N N N 65.458 15.714 -18.305 7.220   1.198  0.589  H3  3Y9 36 
3Y9 H4  H4  H 0 1 N N N 67.996 14.411 -19.392 7.212   -1.065 -1.458 H4  3Y9 37 
3Y9 H5  H5  H 0 1 N N N 67.942 16.091 -18.758 8.679   -0.281 -0.825 H5  3Y9 38 
3Y9 H6  H6  H 0 1 N N N 63.468 6.669  -25.694 -6.149  1.933  0.785  H6  3Y9 39 
3Y9 H7  H7  H 0 1 N N N 65.908 11.461 -19.228 3.323   -0.967 -0.393 H7  3Y9 40 
3Y9 H8  H8  H 0 1 N N N 65.557 9.148  -19.994 0.948   -1.531 -0.091 H8  3Y9 41 
3Y9 H9  H9  H 0 1 N N N 60.840 9.363  -29.043 -10.814 -0.158 0.626  H9  3Y9 42 
3Y9 H10 H10 H 0 1 N N N 65.203 10.346 -25.416 -5.720  -1.285 -1.812 H10 3Y9 43 
3Y9 H11 H11 H 0 1 N N N 62.221 12.631 -28.912 -10.524 -2.884 -1.553 H11 3Y9 44 
3Y9 H12 H12 H 0 1 N N N 61.009 11.640 -29.653 -11.574 -2.020 -0.566 H12 3Y9 45 
3Y9 H13 H13 H 0 1 N N N 66.121 13.244 -19.781 5.072   -0.424 -0.543 H13 3Y9 46 
3Y9 H14 H14 H 0 1 N N N 67.002 15.111 -16.597 8.039   -0.941 1.478  H14 3Y9 47 
3Y9 H15 H15 H 0 1 N N N 67.424 13.493 -17.254 6.571   -1.725 0.845  H15 3Y9 48 
3Y9 H16 H16 H 0 1 N N N 70.396 14.883 -15.616 9.017   -4.450 1.056  H16 3Y9 49 
3Y9 H17 H17 H 0 1 N N N 66.356 17.444 -21.360 8.236   2.743  -2.579 H17 3Y9 50 
3Y9 H18 H18 H 0 1 N N N 65.643 6.744  -24.122 -3.694  0.366  -1.738 H18 3Y9 51 
3Y9 H19 H19 H 0 1 N N N 66.641 8.230  -24.272 -3.924  1.828  -0.749 H19 3Y9 52 
3Y9 H20 H20 H 0 1 N N N 65.862 7.990  -21.958 -3.569  0.492  1.309  H20 3Y9 53 
3Y9 H21 H21 H 0 1 N N N 65.069 9.408  -22.725 -3.339  -0.970 0.320  H21 3Y9 54 
3Y9 H22 H22 H 0 1 N N N 63.023 8.159  -23.058 -1.396  0.091  -0.797 H22 3Y9 55 
3Y9 H23 H23 H 0 1 N N N 63.806 6.642  -22.497 -1.626  1.553  0.192  H23 3Y9 56 
3Y9 H24 H24 H 0 1 N N N 62.256 7.780  -20.861 -1.271  0.217  2.250  H24 3Y9 57 
3Y9 H25 H25 H 0 1 N N N 63.904 7.383  -20.267 -1.041  -1.245 1.261  H25 3Y9 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3Y9 N11 C2  SING N N 1  
3Y9 N3  C2  SING N N 2  
3Y9 N3  C4  SING N N 3  
3Y9 C2  N1  DOUB N N 4  
3Y9 O10 C4  DOUB N N 5  
3Y9 C4  C8  SING N N 6  
3Y9 N1  C9  SING N N 7  
3Y9 C8  C9  DOUB Y N 8  
3Y9 C8  C7  SING Y N 9  
3Y9 C9  N5  SING Y N 10 
3Y9 C7  C6  DOUB Y N 11 
3Y9 N5  C6  SING Y N 12 
3Y9 C6  C29 SING N N 13 
3Y9 C29 C30 SING N N 14 
3Y9 C30 C31 SING N N 15 
3Y9 C31 C32 SING N N 16 
3Y9 O27 C26 DOUB N N 17 
3Y9 C32 C33 SING N N 18 
3Y9 O28 C26 SING N N 19 
3Y9 C15 C33 DOUB Y N 20 
3Y9 C15 C13 SING Y N 21 
3Y9 C33 C16 SING Y N 22 
3Y9 C26 C20 SING N N 23 
3Y9 C13 C12 DOUB Y N 24 
3Y9 C16 C14 DOUB Y N 25 
3Y9 C14 C12 SING Y N 26 
3Y9 C12 C17 SING N N 27 
3Y9 N19 C17 SING N N 28 
3Y9 N19 C20 SING N N 29 
3Y9 C17 O18 DOUB N N 30 
3Y9 C20 C21 SING N N 31 
3Y9 C21 C22 SING N N 32 
3Y9 O25 C23 DOUB N N 33 
3Y9 C22 C23 SING N N 34 
3Y9 C23 O24 SING N N 35 
3Y9 C13 H1  SING N N 36 
3Y9 C15 H2  SING N N 37 
3Y9 C20 H3  SING N N 38 
3Y9 C21 H4  SING N N 39 
3Y9 C21 H5  SING N N 40 
3Y9 C7  H6  SING N N 41 
3Y9 C14 H7  SING N N 42 
3Y9 C16 H8  SING N N 43 
3Y9 N3  H9  SING N N 44 
3Y9 N5  H10 SING N N 45 
3Y9 N11 H11 SING N N 46 
3Y9 N11 H12 SING N N 47 
3Y9 N19 H13 SING N N 48 
3Y9 C22 H14 SING N N 49 
3Y9 C22 H15 SING N N 50 
3Y9 O24 H16 SING N N 51 
3Y9 O28 H17 SING N N 52 
3Y9 C29 H18 SING N N 53 
3Y9 C29 H19 SING N N 54 
3Y9 C30 H20 SING N N 55 
3Y9 C30 H21 SING N N 56 
3Y9 C31 H22 SING N N 57 
3Y9 C31 H23 SING N N 58 
3Y9 C32 H24 SING N N 59 
3Y9 C32 H25 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3Y9 SMILES           ACDLabs              12.01 "O=C(O)C(NC(=O)c1ccc(cc1)CCCCc3cc2c(N=C(N)NC2=O)n3)CCC(=O)O"                                                                                                                                               
3Y9 InChI            InChI                1.03  "InChI=1S/C22H25N5O6/c23-22-26-18-15(20(31)27-22)11-14(24-18)4-2-1-3-12-5-7-13(8-6-12)19(30)25-16(21(32)33)9-10-17(28)29/h5-8,11,16H,1-4,9-10H2,(H,25,30)(H,28,29)(H,32,33)(H4,23,24,26,27,31)/t16-/m0/s1" 
3Y9 InChIKey         InChI                1.03  CEPQCJFDTGQKDN-INIZCTEOSA-N                                                                                                                                                                                
3Y9 SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2[nH]c(CCCCc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                                       
3Y9 SMILES           CACTVS               3.385 "NC1=Nc2[nH]c(CCCCc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)cc2C(=O)N1"                                                                                                                                         
3Y9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@H](CCC(=O)O)C(=O)O"                                                                                                                                       
3Y9 SMILES           "OpenEye OEToolkits" 1.9.2 "c1cc(ccc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)NC(CCC(=O)O)C(=O)O"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3Y9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-{4-[4-(2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-6-yl)butyl]benzoyl}-L-glutamic acid"                            
3Y9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-[[4-[4-(2-azanyl-4-oxidanylidene-3,7-dihydropyrrolo[2,3-d]pyrimidin-6-yl)butyl]phenyl]carbonylamino]pentanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3Y9 "Create component" 2014-12-10 RCSB 
3Y9 "Initial release"  2016-04-20 RCSB 
# 
