data_1C9
# 
_chem_comp.id                                    1C9 
_chem_comp.name                                  "(2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-7-methoxyquinazolin-6-yl}-4-(piperidin-1-yl)but-2-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H25 Cl F N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Dacomitinib 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        469.939 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1C9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4I23 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1C9 C1   C1   C  0 1 Y N N N N N -14.300 40.657 -4.767 0.647  2.936  0.178  C1   1C9 1  
1C9 C2   C2   C  0 1 Y N N N N N -14.539 41.280 -6.039 0.221  4.260  0.363  C2   1C9 2  
1C9 C3   C3   C  0 1 Y N N N N N -13.722 42.389 -6.429 -1.120 4.569  0.401  C3   1C9 3  
1C9 C4   C4   C  0 1 Y N N N N N -12.695 42.888 -5.602 -2.070 3.551  0.255  C4   1C9 4  
1C9 C5   C5   C  0 1 Y N N N N N -12.466 42.271 -4.318 -1.639 2.214  0.069  C5   1C9 5  
1C9 C6   C6   C  0 1 Y N N N N N -13.274 41.162 -3.922 -0.271 1.919  0.033  C6   1C9 6  
1C9 N7   N7   N  0 1 Y N N N N N -11.961 43.936 -6.051 -3.388 3.803  0.292  N7   1C9 7  
1C9 C8   C8   C  0 1 Y N N N N N -10.988 44.393 -5.236 -4.256 2.830  0.158  C8   1C9 8  
1C9 N9   N9   N  0 1 Y N N N N N -10.683 43.908 -4.013 -3.901 1.568  -0.028 N9   1C9 9  
1C9 C10  C10  C  0 1 Y N N N N N -11.420 42.842 -3.540 -2.625 1.208  -0.075 C10  1C9 10 
1C9 N14  N14  N  0 1 N N N N N N -11.126 42.307 -2.246 -2.268 -0.113 -0.259 N14  1C9 11 
1C9 C15  C15  C  0 1 Y N N N N N -10.522 42.992 -1.161 -3.254 -1.105 -0.299 C15  1C9 12 
1C9 C16  C16  C  0 1 Y N N N N N -10.658 44.408 -0.992 -2.995 -2.363 0.229  C16  1C9 13 
1C9 C17  C17  C  0 1 Y N N N N N -10.049 45.074 0.082  -3.969 -3.343 0.183  C17  1C9 14 
1C9 C18  C18  C  0 1 Y N N N N N -9.284  44.344 1.023  -5.201 -3.070 -0.388 C18  1C9 15 
1C9 C19  C19  C  0 1 Y N N N N N -9.130  42.941 0.886  -5.460 -1.816 -0.914 C19  1C9 16 
1C9 C20  C20  C  0 1 Y N N N N N -9.749  42.268 -0.204 -4.490 -0.834 -0.870 C20  1C9 17 
1C9 F21  F21  F  0 1 N N N N N N -8.691  44.962 2.055  -6.152 -4.029 -0.431 F21  1C9 18 
1C9 CL   CL   CL 0 0 N N N N N N -10.254 46.779 0.213  -3.647 -4.917 0.842  CL   1C9 19 
1C9 O11  O11  O  0 1 N N N N N N -15.572 40.723 -6.787 1.142  5.249  0.504  O11  1C9 20 
1C9 C12  C12  C  0 1 N N N N N N -15.906 41.271 -8.065 0.646  6.576  0.689  C12  1C9 21 
1C9 N13  N13  N  0 1 N N N N N N -15.101 39.534 -4.417 2.016  2.645  0.142  N13  1C9 22 
1C9 C26  C26  C  0 1 N N N N N N -14.530 38.310 -4.028 2.455  1.548  -0.506 C26  1C9 23 
1C9 C24  C24  C  0 1 N N N N N N -15.584 37.252 -3.746 3.876  1.176  -0.441 C24  1C9 24 
1C9 C23  C23  C  0 1 N N N N N N -14.962 35.900 -3.356 4.310  0.093  -1.081 C23  1C9 25 
1C9 C25  C25  C  0 1 N N N N N N -16.066 34.967 -2.845 5.766  -0.289 -1.014 C25  1C9 26 
1C9 N33  N33  N  0 1 N N N N N N -15.476 33.780 -2.124 5.889  -1.671 -0.532 N33  1C9 27 
1C9 O27  O27  O  0 1 N N N N N N -13.325 38.069 -3.942 1.676  0.867  -1.145 O27  1C9 28 
1C9 C30  C30  C  0 1 N N N N N N -16.715 32.866 -2.124 7.266  -2.159 -0.677 C30  1C9 29 
1C9 C31  C31  C  0 1 N N N N N N -16.543 31.335 -2.124 7.325  -3.642 -0.303 C31  1C9 30 
1C9 C32  C32  C  0 1 N N N N N N -15.131 30.719 -2.124 6.851  -3.818 1.142  C32  1C9 31 
1C9 C33  C33  C  0 1 N N N N N N -13.892 31.634 -2.124 5.432  -3.258 1.277  C33  1C9 32 
1C9 C34  C34  C  0 1 N N N N N N -14.064 33.164 -2.124 5.428  -1.786 0.858  C34  1C9 33 
1C9 H6   H6   H  0 1 N N N N N N -13.102 40.698 -2.962 0.062  0.902  -0.109 H6   1C9 34 
1C9 H8   H8   H  0 1 N N N N N N -10.398 45.224 -5.595 -5.309 3.070  0.188  H8   1C9 35 
1C9 H20  H20  H  0 1 N N N N N N -9.633  41.199 -0.308 -4.693 0.145  -1.280 H20  1C9 36 
1C9 H24  H24  H  0 1 N N N N N N -16.647 37.429 -3.812 4.568  1.781  0.126  H24  1C9 37 
1C9 H19  H19  H  0 1 N N N N N N -8.546  42.386 1.605  -6.422 -1.605 -1.358 H19  1C9 38 
1C9 H3   H3   H  0 1 N N N N N N -13.898 42.858 -7.386 -1.438 5.591  0.543  H3   1C9 39 
1C9 H16  H16  H  0 1 N N N N N N -11.240 44.973 -1.705 -2.034 -2.576 0.673  H16  1C9 40 
1C9 H12  H12  H  0 1 N N N N N N -16.741 40.703 -8.501 0.041  6.861  -0.172 H12  1C9 41 
1C9 H12A H12A H  0 0 N N N N N N -16.202 42.324 -7.946 0.036  6.614  1.591  H12A 1C9 42 
1C9 H12B H12B H  0 0 N N N N N N -15.032 41.208 -8.730 1.484  7.266  0.788  H12B 1C9 43 
1C9 H23  H23  H  0 1 N N N N N N -13.914 35.648 -3.430 3.619  -0.512 -1.648 H23  1C9 44 
1C9 H25  H25  H  0 1 N N N N N N -16.715 35.523 -2.153 6.208  -0.210 -2.007 H25  1C9 45 
1C9 H25A H25A H  0 0 N N N N N N -16.660 34.611 -3.699 6.287  0.382  -0.331 H25A 1C9 46 
1C9 HN14 HN14 H  0 0 N N N N N N -11.372 41.350 -2.090 -1.334 -0.353 -0.361 HN14 1C9 47 
1C9 HN13 HN13 H  0 0 N N N N N N -16.097 39.618 -4.449 2.648  3.233  0.584  HN13 1C9 48 
1C9 H161 H161 H  0 0 N N N N N N -17.297 33.120 -1.226 7.590  -2.032 -1.710 H161 1C9 49 
1C9 H17  H17  H  0 1 N N N N N N -17.297 33.120 -3.022 7.924  -1.592 -0.018 H17  1C9 50 
1C9 H18  H18  H  0 1 N N N N N N -17.054 30.958 -1.226 6.679  -4.211 -0.970 H18  1C9 51 
1C9 H191 H191 H  0 0 N N N N N N -17.054 30.958 -3.022 8.351  -4.000 -0.396 H191 1C9 52 
1C9 H201 H201 H  0 0 N N N N N N -15.060 30.088 -1.226 6.851  -4.877 1.399  H201 1C9 53 
1C9 H21  H21  H  0 1 N N N N N N -15.060 30.088 -3.022 7.521  -3.280 1.813  H21  1C9 54 
1C9 H22  H22  H  0 1 N N N N N N -13.310 31.380 -1.226 4.756  -3.821 0.635  H22  1C9 55 
1C9 H231 H231 H  0 0 N N N N N N -13.310 31.380 -3.022 5.105  -3.341 2.314  H231 1C9 56 
1C9 H241 H241 H  0 0 N N N N N N -13.553 33.541 -3.022 6.094  -1.220 1.509  H241 1C9 57 
1C9 H251 H251 H  0 0 N N N N N N -13.553 33.541 -1.226 4.417  -1.388 0.939  H251 1C9 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1C9 C4  C5   SING Y N 1  
1C9 C5  C6   DOUB Y N 2  
1C9 C5  C10  SING Y N 3  
1C9 C6  H6   SING N N 4  
1C9 C8  N9   SING Y N 5  
1C9 C8  H8   SING N N 6  
1C9 C10 N14  SING N N 7  
1C9 C15 C16  DOUB Y N 8  
1C9 C15 C20  SING Y N 9  
1C9 C17 CL   SING N N 10 
1C9 C17 C18  DOUB Y N 11 
1C9 C20 C19  DOUB Y N 12 
1C9 C20 H20  SING N N 13 
1C9 C24 C23  DOUB N E 14 
1C9 C24 H24  SING N N 15 
1C9 C26 C24  SING N N 16 
1C9 C26 O27  DOUB N N 17 
1C9 C19 C18  SING Y N 18 
1C9 C19 H19  SING N N 19 
1C9 C3  C4   DOUB Y N 20 
1C9 C3  C2   SING Y N 21 
1C9 C3  H3   SING N N 22 
1C9 C16 C17  SING Y N 23 
1C9 C16 H16  SING N N 24 
1C9 C1  C6   SING Y N 25 
1C9 C1  N13  SING N N 26 
1C9 C2  C1   DOUB Y N 27 
1C9 C18 F21  SING N N 28 
1C9 C12 O11  SING N N 29 
1C9 C12 H12  SING N N 30 
1C9 C12 H12A SING N N 31 
1C9 C12 H12B SING N N 32 
1C9 C23 C25  SING N N 33 
1C9 C23 H23  SING N N 34 
1C9 C25 N33  SING N N 35 
1C9 C25 H25  SING N N 36 
1C9 C25 H25A SING N N 37 
1C9 N7  C4   SING Y N 38 
1C9 N7  C8   DOUB Y N 39 
1C9 N9  C10  DOUB Y N 40 
1C9 N14 C15  SING N N 41 
1C9 N14 HN14 SING N N 42 
1C9 N13 C26  SING N N 43 
1C9 N13 HN13 SING N N 44 
1C9 O11 C2   SING N N 45 
1C9 N33 C30  SING N N 46 
1C9 N33 C34  SING N N 47 
1C9 C30 C31  SING N N 48 
1C9 C31 C32  SING N N 49 
1C9 C32 C33  SING N N 50 
1C9 C33 C34  SING N N 51 
1C9 C30 H161 SING N N 52 
1C9 C30 H17  SING N N 53 
1C9 C31 H18  SING N N 54 
1C9 C31 H191 SING N N 55 
1C9 C32 H201 SING N N 56 
1C9 C32 H21  SING N N 57 
1C9 C33 H22  SING N N 58 
1C9 C33 H231 SING N N 59 
1C9 C34 H241 SING N N 60 
1C9 C34 H251 SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1C9 SMILES           ACDLabs              12.01 "Fc1ccc(cc1Cl)Nc4ncnc2c4cc(c(OC)c2)NC(=O)/C=C/CN3CCCCC3"                                                                                                                               
1C9 InChI            InChI                1.03  "InChI=1S/C24H25ClFN5O2/c1-33-22-14-20-17(24(28-15-27-20)29-16-7-8-19(26)18(25)12-16)13-21(22)30-23(32)6-5-11-31-9-3-2-4-10-31/h5-8,12-15H,2-4,9-11H2,1H3,(H,30,32)(H,27,28,29)/b6-5+" 
1C9 InChIKey         InChI                1.03  LVXJQMNHJWSHET-AATRIKPKSA-N                                                                                                                                                            
1C9 SMILES_CANONICAL CACTVS               3.370 "COc1cc2ncnc(Nc3ccc(F)c(Cl)c3)c2cc1NC(=O)\C=C\CN4CCCCC4"                                                                                                                               
1C9 SMILES           CACTVS               3.370 "COc1cc2ncnc(Nc3ccc(F)c(Cl)c3)c2cc1NC(=O)C=CCN4CCCCC4"                                                                                                                                 
1C9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1cc2c(cc1NC(=O)/C=C/CN3CCCCC3)c(ncn2)Nc4ccc(c(c4)Cl)F"                                                                                                                             
1C9 SMILES           "OpenEye OEToolkits" 1.7.6 "COc1cc2c(cc1NC(=O)C=CCN3CCCCC3)c(ncn2)Nc4ccc(c(c4)Cl)F"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1C9 "SYSTEMATIC NAME" ACDLabs              12.01 "(2E)-N-{4-[(3-chloro-4-fluorophenyl)amino]-7-methoxyquinazolin-6-yl}-4-(piperidin-1-yl)but-2-enamide"       
1C9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E)-N-[4-[(3-chloranyl-4-fluoranyl-phenyl)amino]-7-methoxy-quinazolin-6-yl]-4-piperidin-1-yl-but-2-enamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1C9 "Create component" 2012-12-03 RCSB 
1C9 "Initial release"  2013-01-11 RCSB 
1C9 "Modify synonyms"  2020-06-05 PDBE 
1C9 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      1C9 
_pdbx_chem_comp_synonyms.name         Dacomitinib 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            1C9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C23 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
