data_ZH8
# 
_chem_comp.id                                    ZH8 
_chem_comp.name                                  "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-2-[(4-oxidanylidene-3~{H}-pyrido[1,2-a]pyrimidin-2-yl)methoxy]oxan-3-yl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H22 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2023-03-10 
_chem_comp.pdbx_modified_date                    2023-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        380.372 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     ZH8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8GFE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
ZH8 C1  C1  C 0 1 N N N -28.274 13.169 -61.078 -0.364 4.137  1.074  C1  ZH8 1  
ZH8 C2  C2  C 0 1 N N N -29.233 13.694 -62.109 -0.844 2.922  0.323  C2  ZH8 2  
ZH8 O1  O1  O 0 1 N N N -29.012 13.589 -63.304 -0.198 2.492  -0.609 O1  ZH8 3  
ZH8 N1  N1  N 0 1 N N N -30.330 14.309 -61.666 -1.990 2.314  0.686  N1  ZH8 4  
ZH8 C3  C3  C 0 1 N N R -31.430 14.757 -62.497 -2.457 1.133  -0.045 C3  ZH8 5  
ZH8 C4  C4  C 0 1 N N R -31.549 16.267 -62.363 -3.976 1.007  0.102  C4  ZH8 6  
ZH8 O2  O2  O 0 1 N N N -30.287 16.864 -62.608 -4.610 2.140  -0.496 O2  ZH8 7  
ZH8 C5  C5  C 0 1 N N S -32.651 16.782 -63.293 -4.442 -0.272 -0.600 C5  ZH8 8  
ZH8 O3  O3  O 0 1 N N N -32.797 18.190 -63.126 -5.848 -0.438 -0.408 O3  ZH8 9  
ZH8 C6  C6  C 0 1 N N R -33.967 16.071 -62.944 -3.699 -1.471 -0.004 C6  ZH8 10 
ZH8 C7  C7  C 0 1 N N N -35.133 16.400 -63.849 -4.115 -2.746 -0.741 C7  ZH8 11 
ZH8 O4  O4  O 0 1 N N N -36.309 15.709 -63.394 -3.512 -3.878 -0.111 O4  ZH8 12 
ZH8 O5  O5  O 0 1 N N N -33.795 14.645 -63.056 -2.291 -1.276 -0.146 O5  ZH8 13 
ZH8 C8  C8  C 0 1 N N R -32.800 14.140 -62.171 -1.791 -0.120 0.530  C8  ZH8 14 
ZH8 O6  O6  O 0 1 N N N -32.746 12.740 -62.312 -0.376 -0.035 0.345  O6  ZH8 15 
ZH8 C9  C9  C 0 1 N N N -33.895 12.052 -61.809 0.354  -1.105 0.948  C9  ZH8 16 
ZH8 C10 C10 C 0 1 N N N -33.391 10.913 -60.978 1.827  -0.915 0.693  C10 ZH8 17 
ZH8 C11 C11 C 0 1 N N N -32.035 10.844 -60.581 2.819  -1.921 1.224  C11 ZH8 18 
ZH8 C12 C12 C 0 1 N N N -31.579 9.733  -59.825 4.041  -1.883 0.330  C12 ZH8 19 
ZH8 O7  O7  O 0 1 N N N -30.441 9.544  -59.406 4.622  -2.898 0.010  O7  ZH8 20 
ZH8 N2  N2  N 1 1 Y N N -32.601 8.736  -59.529 4.461  -0.656 -0.102 N2  ZH8 21 
ZH8 C13 C13 C 0 1 Y N N -32.252 7.621  -58.798 5.749  -0.460 -0.371 C13 ZH8 22 
ZH8 C14 C14 C 0 1 Y N N -33.164 6.667  -58.511 6.204  0.767  -0.801 C14 ZH8 23 
ZH8 C15 C15 C 0 1 Y N N -34.493 6.809  -58.959 5.301  1.814  -0.954 C15 ZH8 24 
ZH8 C16 C16 C 0 1 Y N N -34.846 7.901  -59.673 3.966  1.591  -0.671 C16 ZH8 25 
ZH8 C17 C17 C 0 1 Y N N -33.896 8.912  -59.981 3.558  0.327  -0.243 C17 ZH8 26 
ZH8 N3  N3  N 0 1 N N N -34.284 9.961  -60.677 2.236  0.104  0.017  N3  ZH8 27 
ZH8 H1  H1  H 0 1 N N N -27.409 12.711 -61.580 -1.069 4.373  1.872  H1  ZH8 28 
ZH8 H2  H2  H 0 1 N N N -27.932 13.997 -60.440 0.616  3.934  1.505  H2  ZH8 29 
ZH8 H3  H3  H 0 1 N N N -28.779 12.414 -60.458 -0.293 4.983  0.391  H3  ZH8 30 
ZH8 H4  H4  H 0 1 N N N -30.399 14.474 -60.682 -2.507 2.658  1.431  H4  ZH8 31 
ZH8 H5  H5  H 0 1 N N N -31.199 14.527 -63.548 -2.200 1.231  -1.100 H5  ZH8 32 
ZH8 H6  H6  H 0 1 N N N -31.856 16.488 -61.330 -4.238 0.959  1.159  H6  ZH8 33 
ZH8 H7  H7  H 0 1 N N N -29.645 16.508 -62.005 -5.575 2.126  -0.440 H7  ZH8 34 
ZH8 H8  H8  H 0 1 N N N -32.382 16.544 -64.333 -4.226 -0.202 -1.666 H8  ZH8 35 
ZH8 H9  H9  H 0 1 N N N -31.979 18.622 -63.344 -6.211 -1.232 -0.822 H9  ZH8 36 
ZH8 H10 H10 H 0 1 N N N -34.239 16.331 -61.910 -3.948 -1.564 1.053  H10 ZH8 37 
ZH8 H11 H11 H 0 1 N N N -34.899 16.085 -64.877 -5.199 -2.847 -0.709 H11 ZH8 38 
ZH8 H12 H12 H 0 1 N N N -35.316 17.485 -63.830 -3.785 -2.690 -1.778 H12 ZH8 39 
ZH8 H13 H13 H 0 1 N N N -37.040 15.917 -63.964 -3.732 -4.723 -0.526 H13 ZH8 40 
ZH8 H14 H14 H 0 1 N N N -33.057 14.403 -61.134 -2.015 -0.195 1.594  H14 ZH8 41 
ZH8 H15 H15 H 0 1 N N N -34.502 12.731 -61.192 0.169  -1.111 2.023  H15 ZH8 42 
ZH8 H16 H16 H 0 1 N N N -34.503 11.672 -62.643 0.030  -2.053 0.519  H16 ZH8 43 
ZH8 H17 H17 H 0 1 N N N -31.432 10.873 -61.500 3.101  -1.660 2.245  H17 ZH8 44 
ZH8 H18 H18 H 0 1 N N N -31.832 11.743 -59.981 2.380  -2.919 1.206  H18 ZH8 45 
ZH8 H19 H19 H 0 1 N N N -31.236 7.509  -58.450 6.448  -1.275 -0.251 H19 ZH8 46 
ZH8 H20 H20 H 0 1 N N N -32.876 5.797  -57.939 7.252  0.914  -1.017 H20 ZH8 47 
ZH8 H21 H21 H 0 1 N N N -35.226 6.049  -58.733 5.638  2.785  -1.287 H21 ZH8 48 
ZH8 H22 H22 H 0 1 N N N -35.865 8.007  -60.014 3.245  2.388  -0.781 H22 ZH8 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
ZH8 C7  O4  SING N N 1  
ZH8 C7  C6  SING N N 2  
ZH8 O1  C2  DOUB N N 3  
ZH8 C5  O3  SING N N 4  
ZH8 C5  C6  SING N N 5  
ZH8 C5  C4  SING N N 6  
ZH8 O5  C6  SING N N 7  
ZH8 O5  C8  SING N N 8  
ZH8 O2  C4  SING N N 9  
ZH8 C3  C4  SING N N 10 
ZH8 C3  C8  SING N N 11 
ZH8 C3  N1  SING N N 12 
ZH8 O6  C8  SING N N 13 
ZH8 O6  C9  SING N N 14 
ZH8 C2  N1  SING N N 15 
ZH8 C2  C1  SING N N 16 
ZH8 C9  C10 SING N N 17 
ZH8 C10 N3  DOUB N N 18 
ZH8 C10 C11 SING N N 19 
ZH8 N3  C17 SING N N 20 
ZH8 C11 C12 SING N N 21 
ZH8 C17 C16 DOUB Y N 22 
ZH8 C17 N2  SING Y N 23 
ZH8 C12 N2  SING N N 24 
ZH8 C12 O7  DOUB N N 25 
ZH8 C16 C15 SING Y N 26 
ZH8 N2  C13 DOUB Y N 27 
ZH8 C15 C14 DOUB Y N 28 
ZH8 C13 C14 SING Y N 29 
ZH8 C1  H1  SING N N 30 
ZH8 C1  H2  SING N N 31 
ZH8 C1  H3  SING N N 32 
ZH8 N1  H4  SING N N 33 
ZH8 C3  H5  SING N N 34 
ZH8 C4  H6  SING N N 35 
ZH8 O2  H7  SING N N 36 
ZH8 C5  H8  SING N N 37 
ZH8 O3  H9  SING N N 38 
ZH8 C6  H10 SING N N 39 
ZH8 C7  H11 SING N N 40 
ZH8 C7  H12 SING N N 41 
ZH8 O4  H13 SING N N 42 
ZH8 C8  H14 SING N N 43 
ZH8 C9  H15 SING N N 44 
ZH8 C9  H16 SING N N 45 
ZH8 C11 H17 SING N N 46 
ZH8 C11 H18 SING N N 47 
ZH8 C13 H19 SING N N 48 
ZH8 C14 H20 SING N N 49 
ZH8 C15 H21 SING N N 50 
ZH8 C16 H22 SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
ZH8 SMILES           ACDLabs              12.01 "CC(=O)NC1C(O)C(O)C(CO)OC1OCC=1CC(=O)[n+]2ccccc2N=1"                                                                                                                     
ZH8 InChI            InChI                1.06  "InChI=1S/C17H21N3O7/c1-9(22)18-14-16(25)15(24)11(7-21)27-17(14)26-8-10-6-13(23)20-5-3-2-4-12(20)19-10/h2-5,11,14-17,21,24-25H,6-8H2,1H3/p+1/t11-,14-,15-,16-,17-/m1/s1" 
ZH8 InChIKey         InChI                1.06  IMUQPAHFXRVTMB-JSPVNYKOSA-O                                                                                                                                              
ZH8 SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1OCC2=Nc3cccc[n+]3C(=O)C2"                                                                                               
ZH8 SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1OCC2=Nc3cccc[n+]3C(=O)C2"                                                                                                       
ZH8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OCC2=Nc3cccc[n+]3C(=O)C2)CO)O)O"                                                                                                
ZH8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OCC2=Nc3cccc[n+]3C(=O)C2)CO)O)O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
ZH8 "SYSTEMATIC NAME" ACDLabs              12.01 "(4-oxo-3,4-dihydropyrido[1,2-a]pyrimidin-5-ium-2-yl)methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside"                                                              
ZH8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-4,5-bis(oxidanyl)-2-[(4-oxidanylidene-3~{H}-pyrido[1,2-a]pyrimidin-5-ium-2-yl)methoxy]oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
ZH8 "Create component" 2023-03-10 RCSB 
ZH8 "Initial release"  2023-05-24 RCSB 
# 
