data_YK8
#

_chem_comp.id                                   YK8
_chem_comp.name                                 "20alpha-hydroxy-20-(5-methylhexyl)cholesterol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H48 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-11-17
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       416.680
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YK8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AZN
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YK8  C3   C1   C  0  1  N  N  S  11.047  19.222  10.124    7.118  -0.342   0.025  C3   YK8   1  
YK8  C15  C2   C  0  1  N  N  N  16.229  23.524   6.449   -0.014   2.392  -0.098  C15  YK8   2  
YK8  C16  C3   C  0  1  N  N  N  16.357  24.438   5.230   -1.436   2.038  -0.612  C16  YK8   3  
YK8  C17  C4   C  0  1  N  N  S  14.934  24.722   4.735   -1.425   0.520  -0.917  C17  YK8   4  
YK8  C20  C5   C  0  1  N  N  S  14.857  26.105   4.062   -2.510  -0.192  -0.106  C20  YK8   5  
YK8  C22  C6   C  0  1  N  N  N  15.752  26.072   2.825   -3.883   0.356  -0.500  C22  YK8   6  
YK8  C23  C7   C  0  1  N  N  N  15.332  27.095   1.773   -4.968  -0.355   0.311  C23  YK8   7  
YK8  C24  C8   C  0  1  N  N  N  16.440  28.099   1.477   -6.341   0.193  -0.083  C24  YK8   8  
YK8  C25  C9   C  0  1  N  N  N  17.700  27.403   0.977   -7.426  -0.518   0.728  C25  YK8   9  
YK8  C26  C10  C  0  1  N  N  N  18.594  28.382   0.226   -8.799   0.030   0.335  C26  YK8  10  
YK8  C21  C11  C  0  1  N  N  N  13.448  26.519   3.649   -2.459  -1.694  -0.393  C21  YK8  11  
YK8  C2   C12  C  0  1  N  N  N  10.104  20.267   9.538    6.374  -1.640  -0.295  C2   YK8  12  
YK8  C13  C13  C  0  1  N  N  S  14.040  24.376   5.936   -0.043   0.033  -0.492  C13  YK8  13  
YK8  C18  C14  C  0  1  N  N  N  14.005  25.451   7.014   -0.060  -0.353   0.988  C18  YK8  14  
YK8  C12  C15  C  0  1  N  N  N  12.623  23.912   5.608    0.559  -1.090  -1.315  C12  YK8  15  
YK8  C11  C16  C  0  1  N  N  N  11.941  23.372   6.865    1.938  -1.404  -0.713  C11  YK8  16  
YK8  C9   C17  C  0  1  N  N  S  12.718  22.208   7.482    2.841  -0.174  -0.695  C9   YK8  17  
YK8  C10  C18  C  0  1  N  N  R  12.029  21.698   8.743    4.160  -0.515  -0.022  C10  YK8  18  
YK8  C19  C19  C  0  1  N  N  N  11.709  22.864   9.673    3.864  -1.407   1.185  C19  YK8  19  
YK8  C27  C20  C  0  1  N  N  N  19.953  27.764  -0.076   -9.089  -0.322  -1.126  C27  YK8  20  
YK8  C28  C21  C  0  1  N  N  N  17.921  28.855  -1.057   -9.872  -0.590   1.232  C28  YK8  21  
YK8  C1   C22  C  0  1  N  N  N  10.743  20.979   8.351    5.046  -1.316  -0.981  C1   YK8  22  
YK8  C4   C23  C  0  1  N  N  N  12.313  19.913  10.613    6.303   0.478   1.030  C4   YK8  23  
YK8  C5   C24  C  0  1  N  N  N  12.910  20.726   9.490    4.911   0.690   0.459  C5   YK8  24  
YK8  C6   C25  C  0  1  N  N  N  14.210  20.557   9.200    4.443   1.903   0.414  C6   YK8  25  
YK8  C7   C26  C  0  1  N  N  N  14.966  21.379   8.184    3.087   2.235  -0.138  C7   YK8  26  
YK8  C8   C27  C  0  1  N  N  S  14.170  22.592   7.737    2.171   1.015   0.007  C8   YK8  27  
YK8  C14  C28  C  0  1  N  N  S  14.756  23.142   6.444    0.854   1.282  -0.700  C14  YK8  28  
YK8  O1   O1   O  0  1  N  N  N  10.410  18.563  11.225    8.395  -0.651   0.587  O1   YK8  29  
YK8  O2   O2   O  0  1  N  N  N  15.386  27.123   4.920   -2.288   0.034   1.288  O2   YK8  30  
YK8  H1   H1   H  0  1  N  N  N  11.311  18.495   9.342    7.253   0.235  -0.889  H1   YK8  31  
YK8  H2   H2   H  0  1  N  N  N  16.868  22.634   6.344    0.298   3.369  -0.468  H2   YK8  32  
YK8  H3   H3   H  0  1  N  N  N  16.495  24.059   7.373    0.024   2.364   0.991  H3   YK8  33  
YK8  H4   H4   H  0  1  N  N  N  16.939  23.938   4.442   -2.177   2.260   0.156  H4   YK8  34  
YK8  H5   H5   H  0  1  N  N  N  16.854  25.378   5.512   -1.657   2.601  -1.519  H5   YK8  35  
YK8  H6   H6   H  0  1  N  N  N  14.716  23.979   3.954   -1.575   0.347  -1.983  H6   YK8  36  
YK8  H7   H7   H  0  1  N  N  N  15.702  25.067   2.380   -3.919   1.426  -0.295  H7   YK8  37  
YK8  H8   H8   H  0  1  N  N  N  16.786  26.286   3.132   -4.052   0.184  -1.563  H8   YK8  38  
YK8  H9   H9   H  0  1  N  N  N  14.449  27.639   2.139   -4.931  -1.425   0.106  H9   YK8  39  
YK8  H10  H10  H  0  1  N  N  N  15.076  26.564   0.844   -4.799  -0.183   1.374  H10  YK8  40  
YK8  H11  H11  H  0  1  N  N  N  16.678  28.652   2.398   -6.377   1.263   0.122  H11  YK8  41  
YK8  H12  H12  H  0  1  N  N  N  16.090  28.802   0.707   -6.510   0.021  -1.145  H12  YK8  42  
YK8  H13  H13  H  0  1  N  N  N  17.416  26.583   0.302   -7.389  -1.588   0.524  H13  YK8  43  
YK8  H14  H14  H  0  1  N  N  N  18.253  26.996   1.836   -7.257  -0.345   1.791  H14  YK8  44  
YK8  H15  H15  H  0  1  N  N  N  18.754  29.259   0.870   -8.806   1.113   0.456  H15  YK8  45  
YK8  H16  H16  H  0  1  N  N  N  12.798  26.545   4.536   -1.481  -2.084  -0.113  H16  YK8  46  
YK8  H17  H17  H  0  1  N  N  N  13.479  27.518   3.189   -3.232  -2.201   0.184  H17  YK8  47  
YK8  H18  H18  H  0  1  N  N  N  13.050  25.793   2.924   -2.628  -1.866  -1.456  H18  YK8  48  
YK8  H19  H19  H  0  1  N  N  N   9.862  21.008  10.314    6.985  -2.253  -0.958  H19  YK8  49  
YK8  H20  H20  H  0  1  N  N  N   9.181  19.771   9.205    6.181  -2.185   0.629  H20  YK8  50  
YK8  H21  H21  H  0  1  N  N  N  13.347  25.128   7.834   -0.769  -1.167   1.143  H21  YK8  51  
YK8  H22  H22  H  0  1  N  N  N  15.021  25.614   7.403    0.936  -0.675   1.292  H22  YK8  52  
YK8  H23  H23  H  0  1  N  N  N  13.622  26.389   6.584   -0.361   0.508   1.585  H23  YK8  53  
YK8  H24  H24  H  0  1  N  N  N  12.044  24.761   5.217   -0.079  -1.973  -1.263  H24  YK8  54  
YK8  H25  H25  H  0  1  N  N  N  12.667  23.117   4.849    0.671  -0.773  -2.352  H25  YK8  55  
YK8  H26  H26  H  0  1  N  N  N  11.867  24.182   7.605    1.806  -1.763   0.308  H26  YK8  56  
YK8  H27  H27  H  0  1  N  N  N  10.931  23.025   6.600    2.414  -2.186  -1.304  H27  YK8  57  
YK8  H28  H28  H  0  1  N  N  N  12.717  21.387   6.750    3.054   0.111  -1.725  H28  YK8  58  
YK8  H29  H29  H  0  1  N  N  N  11.213  22.486  10.579    3.367  -2.318   0.851  H29  YK8  59  
YK8  H30  H30  H  0  1  N  N  N  12.641  23.376   9.953    4.798  -1.665   1.684  H30  YK8  60  
YK8  H31  H31  H  0  1  N  N  N  11.042  23.571   9.158    3.216  -0.873   1.881  H31  YK8  61  
YK8  H32  H32  H  0  1  N  N  N  20.421  27.430   0.862  -10.067   0.069  -1.406  H32  YK8  62  
YK8  H33  H33  H  0  1  N  N  N  19.823  26.903  -0.748   -8.324   0.120  -1.765  H33  YK8  63  
YK8  H34  H34  H  0  1  N  N  N  20.597  28.513  -0.560   -9.082  -1.405  -1.247  H34  YK8  64  
YK8  H35  H35  H  0  1  N  N  N  16.943  29.297  -0.817   -9.665  -0.339   2.272  H35  YK8  65  
YK8  H36  H36  H  0  1  N  N  N  18.554  29.610  -1.546  -10.850  -0.199   0.951  H36  YK8  66  
YK8  H37  H37  H  0  1  N  N  N  17.780  28.000  -1.734   -9.865  -1.673   1.110  H37  YK8  67  
YK8  H38  H38  H  0  1  N  N  N  10.030  21.717   7.953    5.234  -0.728  -1.880  H38  YK8  68  
YK8  H39  H39  H  0  1  N  N  N  10.974  20.236   7.573    4.541  -2.244  -1.253  H39  YK8  69  
YK8  H40  H40  H  0  1  N  N  N  13.039  19.156  10.944    6.234  -0.062   1.975  H40  YK8  70  
YK8  H41  H41  H  0  1  N  N  N  12.066  20.577  11.455    6.785   1.442   1.193  H41  YK8  71  
YK8  H42  H42  H  0  1  N  N  N  14.749  19.784   9.727    5.057   2.707   0.792  H42  YK8  72  
YK8  H43  H43  H  0  1  N  N  N  15.181  20.751   7.307    2.665   3.075   0.414  H43  YK8  73  
YK8  H44  H44  H  0  1  N  N  N  15.911  21.719   8.633    3.178   2.500  -1.191  H44  YK8  74  
YK8  H45  H45  H  0  1  N  N  N  14.212  23.367   8.517    2.009   0.788   1.061  H45  YK8  75  
YK8  H46  H46  H  0  1  N  N  N  14.631  22.361   5.679    1.025   1.455  -1.763  H46  YK8  76  
YK8  H47  H47  H  0  1  N  N  N  10.999  17.912  11.589    8.923   0.126   0.815  H47  YK8  77  
YK8  H48  H48  H  0  1  N  N  N  14.858  27.180   5.708   -2.307   0.967   1.543  H48  YK8  78  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YK8  C28  C26  SING  N  N   1  
YK8  C27  C26  SING  N  N   2  
YK8  C26  C25  SING  N  N   3  
YK8  C25  C24  SING  N  N   4  
YK8  C24  C23  SING  N  N   5  
YK8  C23  C22  SING  N  N   6  
YK8  C22  C20  SING  N  N   7  
YK8  C21  C20  SING  N  N   8  
YK8  C20  C17  SING  N  N   9  
YK8  C20  O2   SING  N  N  10  
YK8  C17  C16  SING  N  N  11  
YK8  C17  C13  SING  N  N  12  
YK8  C16  C15  SING  N  N  13  
YK8  C12  C13  SING  N  N  14  
YK8  C12  C11  SING  N  N  15  
YK8  C13  C14  SING  N  N  16  
YK8  C13  C18  SING  N  N  17  
YK8  C14  C15  SING  N  N  18  
YK8  C14  C8   SING  N  N  19  
YK8  C11  C9   SING  N  N  20  
YK8  C9   C8   SING  N  N  21  
YK8  C9   C10  SING  N  N  22  
YK8  C8   C7   SING  N  N  23  
YK8  C7   C6   SING  N  N  24  
YK8  C1   C10  SING  N  N  25  
YK8  C1   C2   SING  N  N  26  
YK8  C10  C5   SING  N  N  27  
YK8  C10  C19  SING  N  N  28  
YK8  C6   C5   DOUB  N  N  29  
YK8  C5   C4   SING  N  N  30  
YK8  C2   C3   SING  N  N  31  
YK8  C3   C4   SING  N  N  32  
YK8  C3   O1   SING  N  N  33  
YK8  C3   H1   SING  N  N  34  
YK8  C15  H2   SING  N  N  35  
YK8  C15  H3   SING  N  N  36  
YK8  C16  H4   SING  N  N  37  
YK8  C16  H5   SING  N  N  38  
YK8  C17  H6   SING  N  N  39  
YK8  C22  H7   SING  N  N  40  
YK8  C22  H8   SING  N  N  41  
YK8  C23  H9   SING  N  N  42  
YK8  C23  H10  SING  N  N  43  
YK8  C24  H11  SING  N  N  44  
YK8  C24  H12  SING  N  N  45  
YK8  C25  H13  SING  N  N  46  
YK8  C25  H14  SING  N  N  47  
YK8  C26  H15  SING  N  N  48  
YK8  C21  H16  SING  N  N  49  
YK8  C21  H17  SING  N  N  50  
YK8  C21  H18  SING  N  N  51  
YK8  C2   H19  SING  N  N  52  
YK8  C2   H20  SING  N  N  53  
YK8  C18  H21  SING  N  N  54  
YK8  C18  H22  SING  N  N  55  
YK8  C18  H23  SING  N  N  56  
YK8  C12  H24  SING  N  N  57  
YK8  C12  H25  SING  N  N  58  
YK8  C11  H26  SING  N  N  59  
YK8  C11  H27  SING  N  N  60  
YK8  C9   H28  SING  N  N  61  
YK8  C19  H29  SING  N  N  62  
YK8  C19  H30  SING  N  N  63  
YK8  C19  H31  SING  N  N  64  
YK8  C27  H32  SING  N  N  65  
YK8  C27  H33  SING  N  N  66  
YK8  C27  H34  SING  N  N  67  
YK8  C28  H35  SING  N  N  68  
YK8  C28  H36  SING  N  N  69  
YK8  C28  H37  SING  N  N  70  
YK8  C1   H38  SING  N  N  71  
YK8  C1   H39  SING  N  N  72  
YK8  C4   H40  SING  N  N  73  
YK8  C4   H41  SING  N  N  74  
YK8  C6   H42  SING  N  N  75  
YK8  C7   H43  SING  N  N  76  
YK8  C7   H44  SING  N  N  77  
YK8  C8   H45  SING  N  N  78  
YK8  C14  H46  SING  N  N  79  
YK8  O1   H47  SING  N  N  80  
YK8  O2   H48  SING  N  N  81  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YK8  InChI             InChI                 1.03   "InChI=1S/C28H48O2/c1-19(2)8-6-7-15-28(5,30)25-12-11-23-22-10-9-20-18-21(29)13-16-26(20,3)24(22)14-17-27(23,25)4/h9,19,21-25,29-30H,6-8,10-18H2,1-5H3/t21-,22-,23-,24-,25-,26-,27-,28-/m0/s1"  
YK8  InChIKey          InChI                 1.03   SVUJFWOKISPNOQ-VXBMVYAYSA-N  
YK8  SMILES_CANONICAL  CACTVS                3.385  "CC(C)CCCC[C@](C)(O)[C@H]1CC[C@H]2[C@@H]3CC=C4C[C@@H](O)CC[C@]4(C)[C@H]3CC[C@]12C"  
YK8  SMILES            CACTVS                3.385  "CC(C)CCCC[C](C)(O)[CH]1CC[CH]2[CH]3CC=C4C[CH](O)CC[C]4(C)[CH]3CC[C]12C"  
YK8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(C)CCCC[C@@](C)([C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC=C4[C@@]3(CC[C@@H](C4)O)C)C)O"  
YK8  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CCCCC(C)(C1CCC2C1(CCC3C2CC=C4C3(CCC(C4)O)C)C)O"  
#
_pdbx_chem_comp_identifier.comp_id          YK8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{S},8~{S},9~{S},10~{R},13~{S},14~{S},17~{S})-10,13-dimethyl-17-[(2~{S})-7-methyl-2-oxidanyl-octan-2-yl]-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1~{H}-cyclopenta[a]phenanthren-3-ol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YK8  "Create component"  2020-11-17  PDBE  
YK8  "Initial release"   2021-01-13  RCSB  
##
