data_Y68
# 
_chem_comp.id                                    Y68 
_chem_comp.name                                  "[3-chloro-5-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H19 Cl F3 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-12 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        509.866 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y68 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G55 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y68 C01  C1  C  0 1 N N N N N N -15.209 9.303  49.234 1.984  1.425  -2.349 C01  Y68 1  
Y68 C04  C2  C  0 1 N N S N N N -14.516 10.432 49.968 2.876  2.155  -1.328 C04  Y68 2  
Y68 C05  C3  C  0 1 N N R N N N -13.248 10.669 49.239 1.862  2.632  -0.239 C05  Y68 3  
Y68 C06  C4  C  0 1 N N N N N N -13.440 11.961 48.471 2.667  2.520  1.068  C06  Y68 4  
Y68 C10  C5  C  0 1 Y N N N N N -15.154 13.685 46.407 5.893  0.448  1.309  C10  Y68 5  
Y68 C13  C6  C  0 1 Y N N N N N -13.523 14.878 45.028 8.182  -0.217 1.595  C13  Y68 6  
Y68 C15  C7  C  0 1 Y N N N N N -15.527 13.956 43.975 6.797  -1.299 -0.079 C15  Y68 7  
Y68 C16  C8  C  0 1 Y N N N N N -14.344 14.644 43.863 8.033  -1.158 0.580  C16  Y68 8  
Y68 C20  C9  C  0 1 N N N N N N -14.708 7.614  47.594 -0.335 0.482  -2.259 C20  Y68 9  
Y68 C23  C10 C  0 1 N N N N N N -14.030 5.552  46.363 -2.540 -0.430 -2.226 C23  Y68 10 
Y68 C24  C11 C  0 1 Y N N N N N -12.905 5.287  45.352 -3.682 -0.639 -1.265 C24  Y68 11 
Y68 C25  C12 C  0 1 Y N N N N N -12.218 4.061  45.299 -4.651 0.335  -1.122 C25  Y68 12 
Y68 C26  C13 C  0 1 Y N N N N N -11.181 3.873  44.345 -5.703 0.142  -0.237 C26  Y68 13 
Y68 C27  C14 C  0 1 Y N N N N N -10.836 4.910  43.475 -5.778 -1.028 0.503  C27  Y68 14 
Y68 C28  C15 C  0 1 Y N N N N N -11.537 6.130  43.535 -4.805 -2.001 0.357  C28  Y68 15 
Y68 N02  N1  N  0 1 N N N N N N -14.298 8.900  48.138 0.722  1.084  -1.680 N02  Y68 16 
Y68 C03  C16 C  0 1 N N N N N N -13.018 9.421  48.407 0.802  1.509  -0.273 C03  Y68 17 
Y68 N07  N2  N  0 1 N N N N N N -14.801 12.333 48.665 3.799  1.618  0.823  N07  Y68 18 
Y68 C08  C17 C  0 1 N N N N N N -15.216 11.776 49.949 3.711  1.110  -0.555 C08  Y68 19 
Y68 C09  C18 C  0 1 N N N N N N -15.665 13.129 47.778 4.761  1.307  1.714  C09  Y68 20 
Y68 O11  O1  O  0 1 N N N N N N -16.848 13.339 48.131 4.699  1.734  2.851  O11  Y68 21 
Y68 C12  C19 C  0 1 Y N N N N N -13.945 14.398 46.286 7.131  0.573  1.955  C12  Y68 22 
Y68 C14  C20 C  0 1 Y N N N N N -15.952 13.465 45.261 5.724  -0.486 0.294  C14  Y68 23 
Y68 N17  N3  N  0 1 Y N N N N N -14.196 14.990 42.543 8.877  -2.075 0.005  N17  Y68 24 
Y68 N18  N4  N  0 1 Y N N N N N -15.281 14.514 41.839 8.136  -2.743 -0.980 N18  Y68 25 
Y68 N19  N5  N  0 1 Y N N N N N -16.106 13.877 42.727 6.938  -2.275 -1.008 N19  Y68 26 
Y68 O21  O2  O  0 1 N N N N N N -15.819 7.149  47.940 -0.290 0.174  -3.434 O21  Y68 27 
Y68 O22  O3  O  0 1 N N N N N N -13.732 6.799  46.986 -1.441 0.221  -1.536 O22  Y68 28 
Y68 C29  C21 C  0 1 Y N N N N N -12.564 6.329  44.475 -3.761 -1.808 -0.530 C29  Y68 29 
Y68 CL30 CL1 CL 0 0 N N N N N N -11.116 7.412  42.450 -4.898 -3.466 1.283  CL30 Y68 30 
Y68 O31  O4  O  0 1 N N N N N N -10.481 2.686  44.294 -6.657 1.099  -0.096 O31  Y68 31 
Y68 C32  C22 C  0 1 N N N N N N -10.462 1.859  43.194 -7.710 0.833  0.833  C32  Y68 32 
Y68 F33  F1  F  0 1 N N N N N N -10.265 2.526  42.066 -7.169 0.649  2.111  F33  Y68 33 
Y68 F34  F2  F  0 1 N N N N N N -9.466  1.016  43.344 -8.598 1.914  0.854  F34  Y68 34 
Y68 F35  F3  F  0 1 N N N N N N -11.624 1.209  43.115 -8.393 -0.324 0.445  F35  Y68 35 
Y68 H39  H1  H  0 1 N N N N N N -16.169 9.648  48.824 1.787  2.078  -3.199 H39  Y68 36 
Y68 H38  H2  H  0 1 N N N N N N -15.384 8.457  49.915 2.480  0.516  -2.688 H38  Y68 37 
Y68 H36  H3  H  0 1 N N N N N N -14.310 10.132 51.006 3.464  2.962  -1.765 H36  Y68 38 
Y68 H37  H4  H  0 1 N N N N N N -12.421 10.788 49.955 1.462  3.630  -0.418 H37  Y68 39 
Y68 H42  H5  H  0 1 N N N N N N -12.771 12.741 48.862 3.034  3.503  1.361  H42  Y68 40 
Y68 H43  H6  H  0 1 N N N N N N -13.235 11.804 47.402 2.034  2.112  1.857  H43  Y68 41 
Y68 H47  H7  H  0 1 N N N N N N -12.592 15.417 44.937 9.132  -0.112 2.098  H47  Y68 42 
Y68 H50  H8  H  0 1 N N N N N N -14.061 4.750  47.115 -2.208 -1.394 -2.611 H50  Y68 43 
Y68 H51  H9  H  0 1 N N N N N N -14.999 5.608  45.846 -2.872 0.197  -3.053 H51  Y68 44 
Y68 H52  H10 H  0 1 N N N N N N -12.477 3.265  45.981 -4.591 1.246  -1.699 H52  Y68 45 
Y68 H53  H11 H  0 1 N N N N N N -10.037 4.777  42.761 -6.595 -1.180 1.192  H53  Y68 46 
Y68 H40  H12 H  0 1 N N N N N N -12.417 8.691  48.969 1.115  0.675  0.356  H40  Y68 47 
Y68 H41  H13 H  0 1 N N N N N N -12.503 9.675  47.469 -0.163 1.892  0.061  H41  Y68 48 
Y68 H45  H14 H  0 1 N N N N N N -16.308 11.655 49.995 3.210  0.142  -0.570 H45  Y68 49 
Y68 H44  H15 H  0 1 N N N N N N -14.881 12.410 50.784 4.707  1.026  -0.991 H44  Y68 50 
Y68 H46  H16 H  0 1 N N N N N N -13.338 14.578 47.161 7.253  1.302  2.743  H46  Y68 51 
Y68 H48  H17 H  0 1 N N N N N N -16.884 12.927 45.350 4.770  -0.582 -0.202 H48  Y68 52 
Y68 H49  H18 H  0 1 N N N N N N -13.429 15.502 42.157 9.806  -2.231 0.236  H49  Y68 53 
Y68 H54  H19 H  0 1 N N N N N N -13.085 7.274  44.522 -3.005 -2.570 -0.646 H54  Y68 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y68 C01 N02  SING N N 1  
Y68 N02 C03  SING N N 2  
Y68 C01 C04  SING N N 3  
Y68 C03 C05  SING N N 4  
Y68 C04 C05  SING N N 5  
Y68 C05 C06  SING N N 6  
Y68 C06 N07  SING N N 7  
Y68 C04 C08  SING N N 8  
Y68 N07 C08  SING N N 9  
Y68 N07 C09  SING N N 10 
Y68 C09 C10  SING N N 11 
Y68 C09 O11  DOUB N N 12 
Y68 C10 C12  DOUB Y N 13 
Y68 C12 C13  SING Y N 14 
Y68 C10 C14  SING Y N 15 
Y68 C14 C15  DOUB Y N 16 
Y68 C13 C16  DOUB Y N 17 
Y68 C15 C16  SING Y N 18 
Y68 C16 N17  SING Y N 19 
Y68 N17 N18  SING Y N 20 
Y68 C15 N19  SING Y N 21 
Y68 N18 N19  DOUB Y N 22 
Y68 N02 C20  SING N N 23 
Y68 C20 O21  DOUB N N 24 
Y68 C20 O22  SING N N 25 
Y68 O22 C23  SING N N 26 
Y68 C23 C24  SING N N 27 
Y68 C24 C25  DOUB Y N 28 
Y68 C25 C26  SING Y N 29 
Y68 C26 C27  DOUB Y N 30 
Y68 C27 C28  SING Y N 31 
Y68 C24 C29  SING Y N 32 
Y68 C28 C29  DOUB Y N 33 
Y68 C28 CL30 SING N N 34 
Y68 C26 O31  SING N N 35 
Y68 O31 C32  SING N N 36 
Y68 C32 F33  SING N N 37 
Y68 C32 F34  SING N N 38 
Y68 C32 F35  SING N N 39 
Y68 C01 H39  SING N N 40 
Y68 C01 H38  SING N N 41 
Y68 C04 H36  SING N N 42 
Y68 C05 H37  SING N N 43 
Y68 C06 H42  SING N N 44 
Y68 C06 H43  SING N N 45 
Y68 C13 H47  SING N N 46 
Y68 C23 H50  SING N N 47 
Y68 C23 H51  SING N N 48 
Y68 C25 H52  SING N N 49 
Y68 C27 H53  SING N N 50 
Y68 C03 H40  SING N N 51 
Y68 C03 H41  SING N N 52 
Y68 C08 H45  SING N N 53 
Y68 C08 H44  SING N N 54 
Y68 C12 H46  SING N N 55 
Y68 C14 H48  SING N N 56 
Y68 N17 H49  SING N N 57 
Y68 C29 H54  SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y68 SMILES           ACDLabs              12.01 "FC(F)(F)Oc1cc(cc(Cl)c1)COC(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                       
Y68 InChI            InChI                1.06  "InChI=1S/C22H19ClF3N5O4/c23-16-3-12(4-17(6-16)35-22(24,25)26)11-34-21(33)31-9-14-7-30(8-15(14)10-31)20(32)13-1-2-18-19(5-13)28-29-27-18/h1-6,14-15H,7-11H2,(H,27,28,29)" 
Y68 InChIKey         InChI                1.06  SVROMCXBWOMGJP-UHFFFAOYSA-N                                                                                                                                               
Y68 SMILES_CANONICAL CACTVS               3.385 "FC(F)(F)Oc1cc(Cl)cc(COC(=O)N2C[C@@H]3CN(C[C@@H]3C2)C(=O)c4ccc5[nH]nnc5c4)c1"                                                                                             
Y68 SMILES           CACTVS               3.385 "FC(F)(F)Oc1cc(Cl)cc(COC(=O)N2C[CH]3CN(C[CH]3C2)C(=O)c4ccc5[nH]nnc5c4)c1"                                                                                                 
Y68 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3C[C@@H]4CN(C[C@@H]4C3)C(=O)OCc5cc(cc(c5)Cl)OC(F)(F)F)nn[nH]2"                                                                                           
Y68 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)N3CC4CN(CC4C3)C(=O)OCc5cc(cc(c5)Cl)OC(F)(F)F)nn[nH]2"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y68 "SYSTEMATIC NAME" ACDLabs              12.01 "[3-chloro-5-(trifluoromethoxy)phenyl]methyl (3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrole-2(1H)-carboxylate"                                       
Y68 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[3-chloranyl-5-(trifluoromethyloxy)phenyl]methyl (3~{a}~{S},6~{a}~{R})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrole-5-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y68 "Create component" 2023-06-12 RCSB 
Y68 "Initial release"  2024-12-18 RCSB 
# 
