data_Y48
# 
_chem_comp.id                                    Y48 
_chem_comp.name                                  "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-[(N-{[(2,4,5-trifluorophenyl)methoxy]carbonyl}-L-leucyl)amino]propane-1-sulfonic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H28 F3 N3 O8 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.523 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y48 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7TIY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y48 C14 C1  C 0 1 N N N N N N 6.774  1.242  25.782 0.479  -2.064 -2.268 C14 Y48 1  
Y48 C13 C2  C 0 1 N N N N N N 7.521  1.558  24.485 -0.502 -1.761 -1.133 C13 Y48 2  
Y48 C12 C3  C 0 1 N N S N N N 7.265  0.447  23.474 -0.268 -0.337 -0.624 C12 Y48 3  
Y48 C15 C4  C 0 1 N N N N N N 7.132  2.301  26.823 0.330  -3.526 -2.693 C15 Y48 4  
Y48 C16 C5  C 0 1 N N N N N N 5.276  1.288  25.527 0.178  -1.153 -3.460 C16 Y48 5  
Y48 C17 C6  C 0 1 N N N N N N 7.990  0.855  22.195 -1.311 0.006  0.408  C17 Y48 6  
Y48 C1  C7  C 0 1 Y N N N N N 8.483  -5.384 24.193 5.758  0.389  -0.338 C1  Y48 7  
Y48 C2  C8  C 0 1 Y N N N N N 8.513  -6.705 23.742 6.962  0.620  -0.982 C2  Y48 8  
Y48 C3  C9  C 0 1 Y N N N N N 9.017  -7.710 24.560 8.138  0.668  -0.253 C3  Y48 9  
Y48 C7  C10 C 0 1 N N N N N N 7.938  -4.258 23.313 4.479  0.331  -1.133 C7  Y48 10 
Y48 C6  C11 C 0 1 Y N N N N N 8.956  -5.075 25.462 5.729  0.205  1.031  C6  Y48 11 
Y48 C9  C12 C 0 1 N N N N N N 7.720  -1.942 23.320 2.141  -0.010 -0.794 C9  Y48 12 
Y48 C5  C13 C 0 1 Y N N N N N 9.459  -6.078 26.278 6.904  0.253  1.761  C5  Y48 13 
Y48 C4  C14 C 0 1 Y N N N N N 9.491  -7.393 25.831 8.111  0.484  1.118  C4  Y48 14 
Y48 C20 C15 C 0 1 N N S N N N 7.994  1.811  19.993 -3.632 0.323  1.078  C20 Y48 15 
Y48 C21 C16 C 0 1 N N S N N N 7.745  3.305  19.769 -4.007 -0.937 1.863  C21 Y48 16 
Y48 C24 C17 C 0 1 N N N N N N 7.495  1.024  18.776 -4.876 0.877  0.381  C24 Y48 17 
Y48 C25 C18 C 0 1 N N S N N N 8.093  -0.427 18.789 -4.532 2.208  -0.291 C25 Y48 18 
Y48 C26 C19 C 0 1 N N N N N N 9.581  -0.363 18.755 -4.171 3.273  0.770  C26 Y48 19 
Y48 C27 C20 C 0 1 N N N N N N 9.940  -1.581 17.859 -4.777 4.553  0.152  C27 Y48 20 
Y48 C29 C21 C 0 1 N N N N N N 7.636  -1.176 17.570 -5.747 2.776  -0.992 C29 Y48 21 
Y48 F1  F1  F 0 1 N N N N N N 9.916  -5.771 27.507 6.876  0.073  3.100  F1  Y48 22 
Y48 F2  F2  F 0 1 N N N N N N 8.056  -7.020 22.511 6.989  0.799  -2.321 F2  Y48 23 
Y48 F3  F3  F 0 1 N N N N N N 9.983  -8.356 26.637 9.258  0.530  1.829  F3  Y48 24 
Y48 N11 N1  N 0 1 N N N N N N 7.810  -0.789 23.986 1.064  -0.248 -0.019 N11 Y48 25 
Y48 N19 N2  N 0 1 N N N N N N 7.298  1.401  21.203 -2.618 -0.010 0.076  N19 Y48 26 
Y48 N28 N3  N 0 1 N N N N N N 8.661  -1.841 17.029 -5.863 4.090  -0.720 N28 Y48 27 
Y48 O10 O1  O 0 1 N N N N N N 7.191  -1.999 22.234 2.008  0.131  -1.993 O10 Y48 28 
Y48 O18 O2  O 0 1 N N N N N N 9.177  0.695  22.106 -0.976 0.296  1.536  O18 Y48 29 
Y48 O22 O3  O 0 1 N N N N N N 8.320  3.849  18.852 -5.078 -0.638 2.760  O22 Y48 30 
Y48 O30 O4  O 0 1 N N N N N N 6.523  -1.187 17.135 -6.504 2.141  -1.695 O30 Y48 31 
Y48 O8  O5  O 0 1 N N N N N N 8.245  -3.020 23.883 3.365  0.072  -0.238 O8  Y48 32 
Y48 S1  S1  S 0 1 N Y N N N N 5.956  3.619  19.607 -4.529 -2.235 0.709  S1  Y48 33 
Y48 H1  H1  H 0 1 N N N N N N 7.063  0.245  26.147 1.498  -1.888 -1.924 H1  Y48 34 
Y48 H2  H2  H 0 1 N N N N N N 8.600  1.628  24.690 -1.523 -1.851 -1.502 H2  Y48 35 
Y48 H3  H3  H 0 1 N N N N N N 7.163  2.515  24.078 -0.346 -2.468 -0.319 H3  Y48 36 
Y48 H4  H4  H 0 1 N N N N N N 6.186  0.355  23.281 -0.336 0.363  -1.457 H4  Y48 37 
Y48 H5  H5  H 0 1 N N N N N N 6.601  2.087  27.762 -0.689 -3.703 -3.037 H5  Y48 38 
Y48 H6  H6  H 0 1 N N N N N N 8.217  2.286  27.003 1.028  -3.743 -3.501 H6  Y48 39 
Y48 H7  H7  H 0 1 N N N N N N 6.836  3.294  26.453 0.544  -4.175 -1.844 H7  Y48 40 
Y48 H8  H8  H 0 1 N N N N N N 4.738  1.061  26.459 0.284  -0.111 -3.156 H8  Y48 41 
Y48 H9  H9  H 0 1 N N N N N N 4.995  2.292  25.176 0.877  -1.369 -4.268 H9  Y48 42 
Y48 H10 H10 H 0 1 N N N N N N 5.012  0.545  24.761 -0.841 -1.329 -3.803 H10 Y48 43 
Y48 H11 H11 H 0 1 N N N N N N 9.041  -8.732 24.212 9.078  0.848  -0.755 H11 Y48 44 
Y48 H12 H12 H 0 1 N N N N N N 6.846  -4.359 23.226 4.323  1.283  -1.641 H12 Y48 45 
Y48 H13 H13 H 0 1 N N N N N N 8.393  -4.323 22.314 4.545  -0.468 -1.871 H13 Y48 46 
Y48 H14 H14 H 0 1 N N N N N N 8.932  -4.054 25.813 4.790  0.025  1.532  H14 Y48 47 
Y48 H15 H15 H 0 1 N N N N N N 9.075  1.643  20.107 -3.235 1.072  1.763  H15 Y48 48 
Y48 H16 H16 H 0 1 N N N N N N 8.001  3.796  20.719 -3.143 -1.281 2.431  H16 Y48 49 
Y48 H17 H17 H 0 1 N N N N N N 7.809  1.539  17.856 -5.217 0.168  -0.373 H17 Y48 50 
Y48 H18 H18 H 0 1 N N N N N N 6.397  0.965  18.806 -5.665 1.035  1.116  H18 Y48 51 
Y48 H19 H19 H 0 1 N N N N N N 7.756  -0.947 19.698 -3.711 2.078  -0.996 H19 Y48 52 
Y48 H20 H20 H 0 1 N N N N N N 10.008 -0.469 19.763 -4.638 3.044  1.728  H20 Y48 53 
Y48 H21 H21 H 0 1 N N N N N N 9.930  0.579  18.307 -3.090 3.365  0.878  H21 Y48 54 
Y48 H22 H22 H 0 1 N N N N N N 10.188 -2.457 18.475 -5.171 5.200  0.935  H22 Y48 55 
Y48 H23 H23 H 0 1 N N N N N N 10.789 -1.343 17.201 -4.023 5.083  -0.431 H23 Y48 56 
Y48 H24 H24 H 0 1 N N N N N N 8.272  -0.780 24.873 1.171  -0.360 0.938  H24 Y48 57 
Y48 H25 H25 H 0 1 N N N N N N 6.310  1.529  21.286 -2.886 -0.243 -0.827 H25 Y48 58 
Y48 H26 H26 H 0 1 N N N N N N 8.609  -2.418 16.214 -6.572 4.659  -1.058 H26 Y48 59 
Y48 H27 H27 H 0 1 N N N N N N 8.078  4.767  18.826 -5.882 -0.324 2.323  H27 Y48 60 
Y48 O2  O6  O 0 1 N Y N N N N ?      ?      ?      -4.991 -3.375 1.604  O2  Y48 61 
Y48 O1  O7  O 0 1 N Y N N N N ?      ?      ?      -5.702 -1.839 0.011  O1  Y48 62 
Y48 O3  O8  O 0 1 N Y N N N N ?      ?      ?      -3.408 -2.766 0.015  O3  Y48 63 
Y48 H28 H28 H 0 1 N Y N N N N ?      ?      ?      -5.305 -4.153 1.121  H28 Y48 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y48 N28 C29 SING N N 1  
Y48 N28 C27 SING N N 2  
Y48 O30 C29 DOUB N N 3  
Y48 C29 C25 SING N N 4  
Y48 C27 C26 SING N N 5  
Y48 C26 C25 SING N N 6  
Y48 C24 C25 SING N N 7  
Y48 C24 C20 SING N N 8  
Y48 O22 C21 SING N N 9  
Y48 C21 C20 SING N N 10 
Y48 C20 N19 SING N N 11 
Y48 N19 C17 SING N N 12 
Y48 O18 C17 DOUB N N 13 
Y48 C17 C12 SING N N 14 
Y48 O10 C9  DOUB N N 15 
Y48 F2  C2  SING N N 16 
Y48 C7  O8  SING N N 17 
Y48 C7  C1  SING N N 18 
Y48 C9  O8  SING N N 19 
Y48 C9  N11 SING N N 20 
Y48 C12 N11 SING N N 21 
Y48 C12 C13 SING N N 22 
Y48 C2  C1  DOUB Y N 23 
Y48 C2  C3  SING Y N 24 
Y48 C1  C6  SING Y N 25 
Y48 C13 C14 SING N N 26 
Y48 C3  C4  DOUB Y N 27 
Y48 C6  C5  DOUB Y N 28 
Y48 C16 C14 SING N N 29 
Y48 C14 C15 SING N N 30 
Y48 C4  C5  SING Y N 31 
Y48 C4  F3  SING N N 32 
Y48 C5  F1  SING N N 33 
Y48 C21 S1  SING N N 34 
Y48 C14 H1  SING N N 35 
Y48 C13 H2  SING N N 36 
Y48 C13 H3  SING N N 37 
Y48 C12 H4  SING N N 38 
Y48 C15 H5  SING N N 39 
Y48 C15 H6  SING N N 40 
Y48 C15 H7  SING N N 41 
Y48 C16 H8  SING N N 42 
Y48 C16 H9  SING N N 43 
Y48 C16 H10 SING N N 44 
Y48 C3  H11 SING N N 45 
Y48 C7  H12 SING N N 46 
Y48 C7  H13 SING N N 47 
Y48 C6  H14 SING N N 48 
Y48 C20 H15 SING N N 49 
Y48 C21 H16 SING N N 50 
Y48 C24 H17 SING N N 51 
Y48 C24 H18 SING N N 52 
Y48 C25 H19 SING N N 53 
Y48 C26 H20 SING N N 54 
Y48 C26 H21 SING N N 55 
Y48 C27 H22 SING N N 56 
Y48 C27 H23 SING N N 57 
Y48 N11 H24 SING N N 58 
Y48 N19 H25 SING N N 59 
Y48 N28 H26 SING N N 60 
Y48 O22 H27 SING N N 61 
Y48 S1  O2  SING N N 62 
Y48 S1  O1  DOUB N N 63 
Y48 S1  O3  DOUB N N 64 
Y48 O2  H28 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y48 SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)OCc1cc(F)c(F)cc1F)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"                                                                                                                                                                       
Y48 InChI            InChI                1.03  "InChI=1S/C21H28F3N3O8S/c1-10(2)5-16(27-21(31)35-9-12-6-14(23)15(24)8-13(12)22)19(29)26-17(20(30)36(32,33)34)7-11-3-4-25-18(11)28/h6,8,10-11,16-17,20,30H,3-5,7,9H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t11-,16-,17-,20-/m0/s1" 
Y48 InChIKey         InChI                1.03  UQJSPTNSSUFGMT-IREPMIDKSA-N                                                                                                                                                                                                               
Y48 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)OCc1cc(F)c(F)cc1F)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"                                                                                                                                                  
Y48 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)OCc1cc(F)c(F)cc1F)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"                                                                                                                                                         
Y48 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)S(=O)(=O)O)NC(=O)OCc2cc(c(cc2F)F)F"                                                                                                                                                   
Y48 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2cc(c(cc2F)F)F"                                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y48 "SYSTEMATIC NAME" ACDLabs              12.01 "(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-2-[(N-{[(2,4,5-trifluorophenyl)methoxy]carbonyl}-L-leucyl)amino]propane-1-sulfonic acid"                                               
Y48 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{S},2~{S})-2-[[(2~{S})-4-methyl-2-[[2,4,5-tris(fluoranyl)phenyl]methoxycarbonylamino]pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y48 "Create component" 2022-01-19 RCSB 
Y48 "Initial release"  2022-05-04 RCSB 
Y48 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            Y48 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C21 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
