data_Y28
#

_chem_comp.id                                   Y28
_chem_comp.name                                 "O-benzyl-N-(carboxycarbonyl)-D-tyrosine"
_chem_comp.type                                 "D-PEPTIDE LINKING"
_chem_comp.pdbx_type                            ATOMP
_chem_comp.formula                              "C18 H17 N O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2R)-2-(carboxycarbonylamino)-3-(4-phenylmethoxyphenyl)propanoic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-10-23
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       343.331
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Y28
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2WWJ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Y28  CAD   CAD   C  0  1  Y  N  N  -48.998  -57.562   7.024  -5.966  -0.601   0.752  CAD   Y28   1  
Y28  CAF   CAF   C  0  1  Y  N  N  -48.999  -58.910   7.400  -7.292  -0.425   0.402  CAF   Y28   2  
Y28  CAH   CAH   C  0  1  Y  N  N  -48.357  -59.326   8.571  -7.650   0.602  -0.452  CAH   Y28   3  
Y28  CAG   CAG   C  0  1  Y  N  N  -47.707  -58.376   9.360  -6.683   1.452  -0.955  CAG   Y28   4  
Y28  CAE   CAE   C  0  1  Y  N  N  -47.706  -57.024   8.980  -5.358   1.276  -0.604  CAE   Y28   5  
Y28  CAB   CAB   C  0  1  Y  N  N  -48.347  -56.611   7.808  -4.999   0.249   0.249  CAB   Y28   6  
Y28  CAC   CAC   C  0  1  N  N  N  -48.347  -55.258   7.411  -3.554   0.057   0.631  CAC   Y28   7  
Y28  OH    OH    O  0  1  N  N  N  -47.086  -54.515   7.296  -2.927  -0.823  -0.305  OH    Y28   8  
Y28  CZ    CZ    C  0  1  Y  N  N  -46.258  -54.948   6.255  -1.612  -1.103  -0.102  CZ    Y28   9  
Y28  CE2   CE2   C  0  1  Y  N  N  -46.821  -55.361   5.045  -0.941  -1.949  -0.972  CE2   Y28  10  
Y28  CD2   CD2   C  0  1  Y  N  N  -46.005  -55.772   3.980   0.396  -2.232  -0.765  CD2   Y28  11  
Y28  CE1   CE1   C  0  1  Y  N  N  -44.846  -54.976   6.350  -0.939  -0.538   0.971  CE1   Y28  12  
Y28  CD1   CD1   C  0  1  Y  N  N  -44.021  -55.391   5.280   0.398  -0.823   1.174  CD1   Y28  13  
Y28  CG    CG    C  0  1  Y  N  N  -44.609  -55.795   4.071   1.063  -1.672   0.309  CG    Y28  14  
Y28  CB    CB    C  0  1  N  N  N  -43.784  -56.275   2.845   2.521  -1.983   0.533  CB    Y28  15  
Y28  CA    CA    C  0  1  N  N  R  -43.423  -55.098   1.872   3.381  -0.958  -0.209  CA    Y28  16  
Y28  C     C     C  0  1  N  N  N  -44.484  -54.863   0.786   4.834  -1.339  -0.086  C     Y28  17  
Y28  OXT   OXT   O  0  1  N  Y  N  -45.633  -54.575   1.149   5.260  -2.521  -0.558  OXT   Y28  18  
Y28  O     O     O  0  1  N  N  N  -44.141  -54.943  -0.390   5.615  -0.580   0.436  O     Y28  19  
Y28  N     N     N  0  1  N  N  N  -42.109  -55.372   1.270   3.173   0.369   0.377  N     Y28  20  
Y28  CAR   CAR   C  0  1  N  N  N  -41.039  -55.211   2.039   3.391   1.474  -0.364  CAR   Y28  21  
Y28  OAW   OAW   O  0  1  N  N  N  -41.154  -54.764   3.189   3.760   1.370  -1.515  OAW   Y28  22  
Y28  CAS   CAS   C  0  1  N  N  N  -39.608  -55.513   1.467   3.179   2.828   0.233  CAS   Y28  23  
Y28  OAY   OAY   O  0  1  N  N  N  -39.488  -55.954   0.274   3.397   3.930  -0.506  OAY   Y28  24  
Y28  OAX   OAX   O  0  1  N  N  N  -38.640  -55.280   2.243   2.811   2.932   1.384  OAX   Y28  25  
Y28  HAD   HAD   H  0  1  N  N  N  -49.505  -57.257   6.121  -5.686  -1.401   1.422  HAD   Y28  26  
Y28  HAF   HAF   H  0  1  N  N  N  -49.501  -59.637   6.779  -8.047  -1.089   0.794  HAF   Y28  27  
Y28  HAH   HAH   H  0  1  N  N  N  -48.364  -60.367   8.860  -8.686   0.739  -0.726  HAH   Y28  28  
Y28  HAG   HAG   H  0  1  N  N  N  -47.203  -58.681  10.265  -6.964   2.254  -1.622  HAG   Y28  29  
Y28  HAE   HAE   H  0  1  N  N  N  -47.205  -56.295   9.600  -4.603   1.940  -0.997  HAE   Y28  30  
Y28  HAC1  HAC1  H  0  0  N  N  N  -48.803  -55.237   6.410  -3.045   1.020   0.621  HAC1  Y28  31  
Y28  HAC2  HAC2  H  0  0  N  N  N  -48.867  -54.751   8.237  -3.497  -0.375   1.630  HAC2  Y28  32  
Y28  HE2   HE2   H  0  1  N  N  N  -47.895  -55.364   4.928  -1.462  -2.388  -1.810  HE2   Y28  33  
Y28  HE1   HE1   H  0  1  N  N  N  -44.381  -54.669   7.275  -1.458   0.125   1.647  HE1   Y28  34  
Y28  HD2   HD2   H  0  1  N  N  N  -46.471  -56.082   3.057   0.919  -2.891  -1.442  HD2   Y28  35  
Y28  HD1   HD1   H  0  1  N  N  N  -42.947  -55.397   5.392   0.922  -0.384   2.009  HD1   Y28  36  
Y28  HB1C  HB1C  H  0  0  N  N  N  -42.850  -56.728   3.208   2.742  -1.939   1.599  HB1C  Y28  37  
Y28  HB2C  HB2C  H  0  0  N  N  N  -44.397  -56.998   2.287   2.741  -2.982   0.157  HB2C  Y28  38  
Y28  HA    HA    H  0  1  N  N  N  -43.390  -54.169   2.460   3.098  -0.939  -1.261  HA    Y28  39  
Y28  H     H     H  0  1  N  N  N  -42.025  -55.668   0.319   2.878   0.452   1.297  H     Y28  40  
Y28  HXT   HXT   H  0  1  N  N  N  -46.180  -54.433   0.386   6.200  -2.721  -0.457  HXT   Y28  41  
Y28  HAY   HAY   H  0  1  N  N  N  -38.568  -56.075   0.072   3.247   4.784  -0.076  HAY   Y28  42  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Y28  CAD  CAF   SING  Y  N   1  
Y28  CAD  CAB   DOUB  Y  N   2  
Y28  CAF  CAH   DOUB  Y  N   3  
Y28  CAH  CAG   SING  Y  N   4  
Y28  CAG  CAE   DOUB  Y  N   5  
Y28  CAE  CAB   SING  Y  N   6  
Y28  CAB  CAC   SING  N  N   7  
Y28  CAC  OH    SING  N  N   8  
Y28  OH   CZ    SING  N  N   9  
Y28  CZ   CE2   SING  Y  N  10  
Y28  CZ   CE1   DOUB  Y  N  11  
Y28  CE2  CD2   DOUB  Y  N  12  
Y28  CD2  CG    SING  Y  N  13  
Y28  CE1  CD1   SING  Y  N  14  
Y28  CD1  CG    DOUB  Y  N  15  
Y28  CG   CB    SING  N  N  16  
Y28  CB   CA    SING  N  N  17  
Y28  CA   C     SING  N  N  18  
Y28  CA   N     SING  N  N  19  
Y28  C    OXT   SING  N  N  20  
Y28  C    O     DOUB  N  N  21  
Y28  N    CAR   SING  N  N  22  
Y28  CAR  OAW   DOUB  N  N  23  
Y28  CAR  CAS   SING  N  N  24  
Y28  CAS  OAY   SING  N  N  25  
Y28  CAS  OAX   DOUB  N  N  26  
Y28  CAD  HAD   SING  N  N  27  
Y28  CAF  HAF   SING  N  N  28  
Y28  CAH  HAH   SING  N  N  29  
Y28  CAG  HAG   SING  N  N  30  
Y28  CAE  HAE   SING  N  N  31  
Y28  CAC  HAC1  SING  N  N  32  
Y28  CAC  HAC2  SING  N  N  33  
Y28  CE2  HE2   SING  N  N  34  
Y28  CE1  HE1   SING  N  N  35  
Y28  CD2  HD2   SING  N  N  36  
Y28  CD1  HD1   SING  N  N  37  
Y28  CB   HB1C  SING  N  N  38  
Y28  CB   HB2C  SING  N  N  39  
Y28  CA   HA    SING  N  N  40  
Y28  N    H     SING  N  N  41  
Y28  OXT  HXT   SING  N  N  42  
Y28  OAY  HAY   SING  N  N  43  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Y28  SMILES            ACDLabs               10.04  "O=C(O)C(=O)NC(C(=O)O)Cc2ccc(OCc1ccccc1)cc2"  
Y28  SMILES_CANONICAL  CACTVS                3.352  "OC(=O)[C@@H](Cc1ccc(OCc2ccccc2)cc1)NC(=O)C(O)=O"  
Y28  SMILES            CACTVS                3.352  "OC(=O)[CH](Cc1ccc(OCc2ccccc2)cc1)NC(=O)C(O)=O"  
Y28  SMILES_CANONICAL  "OpenEye OEToolkits"  1.6.1  "c1ccc(cc1)COc2ccc(cc2)C[C@H](C(=O)O)NC(=O)C(=O)O"  
Y28  SMILES            "OpenEye OEToolkits"  1.6.1  "c1ccc(cc1)COc2ccc(cc2)CC(C(=O)O)NC(=O)C(=O)O"  
Y28  InChI             InChI                 1.03   "InChI=1S/C18H17NO6/c20-16(18(23)24)19-15(17(21)22)10-12-6-8-14(9-7-12)25-11-13-4-2-1-3-5-13/h1-9,15H,10-11H2,(H,19,20)(H,21,22)(H,23,24)/t15-/m1/s1"  
Y28  InChIKey          InChI                 1.03   XBNMVIZFMMWMFD-OAHLLOKOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Y28  "SYSTEMATIC NAME"  ACDLabs               10.04  "O-benzyl-N-(carboxycarbonyl)-D-tyrosine"  
Y28  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "(2R)-2-(carboxycarbonylamino)-3-(4-phenylmethoxyphenyl)propanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Y28  "Create component"      2009-10-23  EBI   
Y28  "Modify aromatic_flag"  2011-06-04  RCSB  
Y28  "Modify descriptor"     2011-06-04  RCSB  
Y28  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Y28
_pdbx_chem_comp_synonyms.name        "(2R)-2-(carboxycarbonylamino)-3-(4-phenylmethoxyphenyl)propanoic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
