data_Y08
# 
_chem_comp.id                                    Y08 
_chem_comp.name                                  "(E,2R,3R,4S,5R)-N-[[(3S)-1-cyclopropylcarbonylpiperidin-3-yl]methyl]-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H38 N2 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-15 
_chem_comp.pdbx_modified_date                    2012-06-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        426.547 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y08 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PKC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y08 N1   N1   N 0 1 N N N -25.083 -3.844 -11.384 -1.064 -1.462 0.051  N1   Y08 1  
Y08 O1   O1   O 0 1 N N N -25.778 1.846  -15.346 3.239  1.428  0.848  O1   Y08 2  
Y08 N2   N2   N 0 1 N N N -28.382 -4.790 -7.824  -5.530 0.459  0.536  N2   Y08 3  
Y08 O2   O2   O 0 1 N N N -26.552 -1.717 -13.551 1.210  0.175  0.312  O2   Y08 4  
Y08 O3   O3   O 0 1 N N N -25.131 -0.710 -15.429 3.457  -0.525 -1.249 O3   Y08 5  
Y08 O4   O4   O 0 1 N N N -23.918 -2.192 -10.476 -0.406 -3.490 0.664  O4   Y08 6  
Y08 O5   O5   O 0 1 N N N -29.444 -6.651 -8.406  -7.020 -0.505 -0.795 O5   Y08 7  
Y08 O6   O6   O 0 1 N N N -22.996 -1.371 -12.972 2.057  -3.353 -0.185 O6   Y08 8  
Y08 C01  C01  C 0 1 N N N -26.073 2.902  -10.602 7.187  1.952  -0.325 C01  Y08 9  
Y08 C02  C02  C 0 1 N N N -26.327 2.116  -11.864 5.780  1.696  0.151  C02  Y08 10 
Y08 C03  C03  C 0 1 N N N -25.518 2.073  -12.923 5.417  0.488  0.502  C03  Y08 11 
Y08 C04  C04  C 0 1 N N R -25.944 1.172  -14.033 4.010  0.232  0.979  C04  Y08 12 
Y08 C05  C05  C 0 1 N N S -25.007 -0.046 -14.104 3.379  -0.876 0.134  C05  Y08 13 
Y08 C06  C06  C 0 1 N N R -25.313 -1.054 -13.011 1.913  -1.050 0.534  C06  Y08 14 
Y08 C07  C07  C 0 1 N N R -24.234 -2.101 -12.833 1.282  -2.159 -0.311 C07  Y08 15 
Y08 C08  C08  C 0 1 N N N -26.107 1.904  -9.451  7.150  2.502  -1.752 C08  Y08 16 
Y08 C09  C09  C 0 1 N N N -24.753 3.640  -10.657 7.861  2.970  0.597  C09  Y08 17 
Y08 C10  C10  C 0 1 N N N -27.170 3.989  -10.435 7.979  0.643  -0.303 C10  Y08 18 
Y08 C11  C11  C 0 1 N N N -24.386 -2.726 -11.477 -0.123 -2.419 0.170  C11  Y08 19 
Y08 C12  C12  C 0 1 N N N -25.374 -4.524 -10.079 -2.429 -1.715 0.519  C12  Y08 20 
Y08 C13  C13  C 0 1 N N S -26.765 -4.197 -9.572  -3.289 -0.473 0.275  C13  Y08 21 
Y08 C14  C14  C 0 1 N N N -26.610 -2.752 -9.020  -2.775 0.682  1.136  C14  Y08 22 
Y08 C15  C15  C 0 1 N N N -27.838 -2.362 -8.156  -3.614 1.933  0.869  C15  Y08 23 
Y08 C16  C16  C 0 1 N N N -28.271 -3.480 -7.140  -5.072 1.657  1.252  C16  Y08 24 
Y08 C17  C17  C 0 1 N N N -27.106 -5.221 -8.436  -4.743 -0.777 0.651  C17  Y08 25 
Y08 C18  C18  C 0 1 N N N -29.522 -5.549 -7.838  -6.653 0.491  -0.208 C18  Y08 26 
Y08 C19  C19  C 0 1 N N N -30.742 -5.150 -6.953  -7.452 1.764  -0.312 C19  Y08 27 
Y08 C20  C20  C 0 1 N N N -32.143 -5.708 -7.448  -8.716 1.737  -1.173 C20  Y08 28 
Y08 C21  C21  C 0 1 N N N -31.907 -4.219 -7.185  -7.470 2.478  -1.665 C21  Y08 29 
Y08 C22  C22  C 0 1 N N N -21.845 -2.293 -13.061 2.530  -3.873 -1.429 C22  Y08 30 
Y08 HN1  HN1  H 0 1 N N N -25.434 -4.257 -12.224 -0.836 -0.604 -0.340 HN1  Y08 31 
Y08 HO1  HO1  H 0 1 N N N -26.053 1.259  -16.041 3.177  1.760  -0.058 HO1  Y08 32 
Y08 HO2  HO2  H 0 1 N N N -26.847 -2.383 -12.941 1.222  0.474  -0.607 HO2  Y08 33 
Y08 HO3  HO3  H 0 1 N N N -24.549 -1.460 -15.463 3.002  0.299  -1.472 HO3  Y08 34 
Y08 H02  H02  H 0 1 N N N -27.240 1.540  -11.914 5.072  2.510  0.203  H02  Y08 35 
Y08 H03  H03  H 0 1 N N N -24.610 2.655  -12.974 6.126  -0.326 0.450  H03  Y08 36 
Y08 H04  H04  H 0 1 N N N -26.984 0.842  -13.891 4.031  -0.075 2.024  H04  Y08 37 
Y08 H05  H05  H 0 1 N N N -23.973 0.306  -13.976 3.915  -1.811 0.302  H05  Y08 38 
Y08 H06  H06  H 0 1 N N N -25.523 -0.544 -12.059 1.853  -1.318 1.589  H06  Y08 39 
Y08 H07  H07  H 0 1 N N N -24.326 -2.869 -13.615 1.257  -1.851 -1.356 H07  Y08 40 
Y08 H08  H08  H 0 1 N N N -25.926 2.431  -8.503  6.670  1.776  -2.409 H08  Y08 41 
Y08 H08A H08A H 0 0 N N N -27.093 1.417  -9.417  6.586  3.434  -1.768 H08A Y08 42 
Y08 H08B H08B H 0 0 N N N -25.327 1.143  -9.602  8.168  2.687  -2.097 H08B Y08 43 
Y08 H09  H09  H 0 1 N N N -24.606 4.199  -9.721  8.878  3.155  0.252  H09  Y08 44 
Y08 H09A H09A H 0 0 N N N -23.934 2.917  -10.785 7.297  3.903  0.581  H09A Y08 45 
Y08 H09B H09B H 0 0 N N N -24.760 4.340  -11.505 7.887  2.579  1.613  H09B Y08 46 
Y08 H10  H10  H 0 1 N N N -26.983 4.561  -9.514  8.996  0.827  -0.648 H10  Y08 47 
Y08 H10A H10A H 0 0 N N N -27.147 4.669  -11.300 8.005  0.251  0.713  H10A Y08 48 
Y08 H10B H10B H 0 0 N N N -28.157 3.507  -10.373 7.499  -0.083 -0.960 H10B Y08 49 
Y08 H12  H12  H 0 1 N N N -25.292 -5.612 -10.218 -2.849 -2.560 -0.026 H12  Y08 50 
Y08 H12A H12A H 0 0 N N N -24.636 -4.194 -9.333  -2.412 -1.941 1.585  H12A Y08 51 
Y08 H13  H13  H 0 1 N N N -27.513 -4.237 -10.378 -3.236 -0.195 -0.777 H13  Y08 52 
Y08 H14  H14  H 0 1 N N N -25.701 -2.697 -8.402  -2.851 0.412  2.190  H14  Y08 53 
Y08 H14A H14A H 0 0 N N N -26.524 -2.051 -9.863  -1.733 0.884  0.888  H14A Y08 54 
Y08 H15  H15  H 0 1 N N N -27.590 -1.453 -7.588  -3.232 2.762  1.465  H15  Y08 55 
Y08 H15A H15A H 0 0 N N N -28.684 -2.155 -8.827  -3.559 2.190  -0.189 H15A Y08 56 
Y08 H16  H16  H 0 1 N N N -29.246 -3.215 -6.705  -5.691 2.509  0.972  H16  Y08 57 
Y08 H16A H16A H 0 0 N N N -27.520 -3.552 -6.340  -5.141 1.490  2.327  H16A Y08 58 
Y08 H17  H17  H 0 1 N N N -26.308 -5.224 -7.679  -4.786 -1.143 1.677  H17  Y08 59 
Y08 H17A H17A H 0 0 N N N -27.214 -6.231 -8.859  -5.146 -1.531 -0.025 H17A Y08 60 
Y08 H19  H19  H 0 1 N N N -30.570 -5.365 -5.888  -7.467 2.384  0.585  H19  Y08 61 
Y08 H20  H20  H 0 1 N N N -32.261 -6.079 -8.477  -8.970 0.798  -1.665 H20  Y08 62 
Y08 H20A H20A H 0 0 N N N -32.777 -6.298 -6.770  -9.563 2.339  -0.844 H20A Y08 63 
Y08 H21  H21  H 0 1 N N N -32.395 -3.737 -6.325  -7.498 3.568  -1.658 H21  Y08 64 
Y08 H21A H21A H 0 0 N N N -31.879 -3.517 -8.032  -6.905 2.027  -2.480 H21A Y08 65 
Y08 H22  H22  H 0 1 N N N -20.917 -1.712 -13.166 3.044  -4.818 -1.256 H22  Y08 66 
Y08 H22A H22A H 0 0 N N N -21.794 -2.904 -12.148 1.686  -4.035 -2.099 H22A Y08 67 
Y08 H22B H22B H 0 0 N N N -21.968 -2.949 -13.935 3.221  -3.161 -1.881 H22B Y08 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y08 C11 N1   SING N N 1  
Y08 N1  C12  SING N N 2  
Y08 N1  HN1  SING N N 3  
Y08 O1  C04  SING N N 4  
Y08 O1  HO1  SING N N 5  
Y08 C17 N2   SING N N 6  
Y08 C18 N2   SING N N 7  
Y08 N2  C16  SING N N 8  
Y08 O2  C06  SING N N 9  
Y08 O2  HO2  SING N N 10 
Y08 O3  C05  SING N N 11 
Y08 O3  HO3  SING N N 12 
Y08 C11 O4   DOUB N N 13 
Y08 O5  C18  DOUB N N 14 
Y08 C22 O6   SING N N 15 
Y08 O6  C07  SING N N 16 
Y08 C02 C01  SING N N 17 
Y08 C09 C01  SING N N 18 
Y08 C01 C10  SING N N 19 
Y08 C01 C08  SING N N 20 
Y08 C03 C02  DOUB N E 21 
Y08 C02 H02  SING N N 22 
Y08 C04 C03  SING N N 23 
Y08 C03 H03  SING N N 24 
Y08 C05 C04  SING N N 25 
Y08 C04 H04  SING N N 26 
Y08 C05 C06  SING N N 27 
Y08 C05 H05  SING N N 28 
Y08 C06 C07  SING N N 29 
Y08 C06 H06  SING N N 30 
Y08 C07 C11  SING N N 31 
Y08 C07 H07  SING N N 32 
Y08 C08 H08  SING N N 33 
Y08 C08 H08A SING N N 34 
Y08 C08 H08B SING N N 35 
Y08 C09 H09  SING N N 36 
Y08 C09 H09A SING N N 37 
Y08 C09 H09B SING N N 38 
Y08 C10 H10  SING N N 39 
Y08 C10 H10A SING N N 40 
Y08 C10 H10B SING N N 41 
Y08 C12 C13  SING N N 42 
Y08 C12 H12  SING N N 43 
Y08 C12 H12A SING N N 44 
Y08 C13 C14  SING N N 45 
Y08 C13 C17  SING N N 46 
Y08 C13 H13  SING N N 47 
Y08 C14 C15  SING N N 48 
Y08 C14 H14  SING N N 49 
Y08 C14 H14A SING N N 50 
Y08 C15 C16  SING N N 51 
Y08 C15 H15  SING N N 52 
Y08 C15 H15A SING N N 53 
Y08 C16 H16  SING N N 54 
Y08 C16 H16A SING N N 55 
Y08 C17 H17  SING N N 56 
Y08 C17 H17A SING N N 57 
Y08 C18 C19  SING N N 58 
Y08 C20 C19  SING N N 59 
Y08 C21 C19  SING N N 60 
Y08 C19 H19  SING N N 61 
Y08 C20 C21  SING N N 62 
Y08 C20 H20  SING N N 63 
Y08 C20 H20A SING N N 64 
Y08 C21 H21  SING N N 65 
Y08 C21 H21A SING N N 66 
Y08 C22 H22  SING N N 67 
Y08 C22 H22A SING N N 68 
Y08 C22 H22B SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y08 SMILES           ACDLabs              12.01 "O=C(N1CCCC(CNC(=O)C(OC)C(O)C(O)C(O)/C=C/C(C)(C)C)C1)C2CC2"                                                                                                                                    
Y08 InChI            InChI                1.03  "InChI=1S/C22H38N2O6/c1-22(2,3)10-9-16(25)17(26)18(27)19(30-4)20(28)23-12-14-6-5-11-24(13-14)21(29)15-7-8-15/h9-10,14-19,25-27H,5-8,11-13H2,1-4H3,(H,23,28)/b10-9+/t14-,16+,17-,18+,19+/m0/s1" 
Y08 InChIKey         InChI                1.03  JFNUXOSYQRHRBI-NNURDPEKSA-N                                                                                                                                                                    
Y08 SMILES_CANONICAL CACTVS               3.370 "CO[C@H]([C@H](O)[C@@H](O)[C@H](O)\C=C\C(C)(C)C)C(=O)NC[C@@H]1CCCN(C1)C(=O)C2CC2"                                                                                                              
Y08 SMILES           CACTVS               3.370 "CO[CH]([CH](O)[CH](O)[CH](O)C=CC(C)(C)C)C(=O)NC[CH]1CCCN(C1)C(=O)C2CC2"                                                                                                                       
Y08 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)/C=C/[C@H]([C@@H]([C@H]([C@H](C(=O)NC[C@@H]1CCCN(C1)C(=O)C2CC2)OC)O)O)O"                                                                                                              
Y08 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C)(C)C=CC(C(C(C(C(=O)NCC1CCCN(C1)C(=O)C2CC2)OC)O)O)O"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y08 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R,3R,4S,5R,6E)-N-{[(3S)-1-(cyclopropylcarbonyl)piperidin-3-yl]methyl}-3,4,5-trihydroxy-2-methoxy-8,8-dimethylnon-6-enamide (non-preferred name)" 
Y08 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(E,2R,3R,4S,5R)-N-[[(3S)-1-cyclopropylcarbonylpiperidin-3-yl]methyl]-2-methoxy-8,8-dimethyl-3,4,5-tris(oxidanyl)non-6-enamide"                     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y08 "Create component"  2010-11-15 RCSB 
Y08 "Modify descriptor" 2011-06-04 RCSB 
Y08 "Modify name"       2012-06-17 RCSB 
# 
