data_XY8
# 
_chem_comp.id                                    XY8 
_chem_comp.name                                  "3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H26 F2 N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-05 
_chem_comp.pdbx_modified_date                    2024-11-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        412.479 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XY8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8T1V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XY8 C01 C1  C 0 1 N N N N N N 12.979 -10.467 3.784  -4.226 3.743  0.633  C01 XY8 1  
XY8 C02 C2  C 0 1 N N N N N N 12.141 -10.727 5.030  -3.537 3.295  -0.658 C02 XY8 2  
XY8 C03 C3  C 0 1 N N N N N N 10.663 -10.441 4.767  -2.960 4.515  -1.378 C03 XY8 3  
XY8 C05 C4  C 0 1 Y N N N N N 12.503 -10.144 7.465  -2.730 1.014  -0.171 C05 XY8 4  
XY8 C07 C5  C 0 1 Y N N N N N 12.167 -11.704 9.173  -4.203 -0.745 -0.254 C07 XY8 5  
XY8 C08 C6  C 0 1 Y N N N N N 12.248 -10.672 10.119 -3.176 -1.628 0.163  C08 XY8 6  
XY8 C09 C7  C 0 1 Y N N N N N 12.108 -11.020 11.459 -3.482 -2.988 0.315  C09 XY8 7  
XY8 C11 C8  C 0 1 Y N N N N N 11.826 -13.258 10.983 -5.677 -2.616 -0.319 C11 XY8 8  
XY8 C12 C9  C 0 1 N N N N N N 11.597 -14.655 11.472 -7.044 -3.197 -0.576 C12 XY8 9  
XY8 C13 C10 C 0 1 Y N N N N N 11.954 -13.010 9.615  -5.481 -1.279 -0.495 C13 XY8 10 
XY8 C15 C11 C 0 1 Y N N N N N 12.585 -9.106  8.417  -1.702 0.132  0.246  C15 XY8 11 
XY8 C17 C12 C 0 1 N N N N N N 13.440 -6.886  9.019  0.550  0.038  -0.433 C17 XY8 12 
XY8 C18 C13 C 0 1 N N N N N N 13.855 -5.565  8.376  1.924  0.666  -0.183 C18 XY8 13 
XY8 C20 C14 C 0 1 N N N N N N 12.938 -3.525  7.186  3.666  0.956  1.474  C20 XY8 14 
XY8 C21 C15 C 0 1 Y N N N N N 11.669 -2.746  6.949  4.674  0.161  0.684  C21 XY8 15 
XY8 C22 C16 C 0 1 Y N N N N N 11.154 -1.875  7.919  4.867  0.430  -0.660 C22 XY8 16 
XY8 C24 C17 C 0 1 Y N N N N N 9.977  -1.168  7.706  5.792  -0.300 -1.385 C24 XY8 17 
XY8 C25 C18 C 0 1 Y N N N N N 9.298  -1.338  6.507  6.524  -1.298 -0.766 C25 XY8 18 
XY8 C27 C19 C 0 1 Y N N N N N 9.778  -2.196  5.528  6.329  -1.565 0.579  C27 XY8 19 
XY8 C28 C20 C 0 1 Y N N N N N 10.959 -2.897  5.752  5.409  -0.832 1.304  C28 XY8 20 
XY8 C29 C21 C 0 1 N N N N N N 12.092 -5.854  6.659  1.338  1.020  2.139  C29 XY8 21 
XY8 C30 C22 C 0 1 N N N N N N 11.653 -7.143  7.337  -0.036 0.393  1.888  C30 XY8 22 
XY8 F23 F1  F 0 1 N N N N N N 11.805 -1.707  9.082  4.151  1.404  -1.264 F23 XY8 23 
XY8 F26 F2  F 0 1 N N N N N N 8.160  -0.664  6.284  7.427  -2.012 -1.472 F26 XY8 24 
XY8 N04 N1  N 0 1 N N N N N N 12.638 -9.843  6.089  -2.455 2.361  -0.335 N04 XY8 25 
XY8 N06 N2  N 0 1 Y N N N N N 12.295 -11.424 7.860  -3.944 0.559  -0.409 N06 XY8 26 
XY8 N10 N3  N 0 1 Y N N N N N 11.901 -12.275 11.909 -4.699 -3.420 0.071  N10 XY8 27 
XY8 N14 N4  N 0 1 Y N N N N N 12.453 -9.396  9.735  -1.946 -1.153 0.401  N14 XY8 28 
XY8 N16 N5  N 0 1 N N N N N N 12.797 -7.754  8.018  -0.430 0.625  0.492  N16 XY8 29 
XY8 N19 N6  N 0 1 N N N N N N 12.657 -4.923  7.710  2.318  0.434  1.214  N19 XY8 30 
XY8 H1  H1  H 0 1 N N N N N N 14.036 -10.680 4.001  -3.501 4.236  1.279  H1  XY8 31 
XY8 H2  H2  H 0 1 N N N N N N 12.634 -11.118 2.968  -5.031 4.437  0.393  H2  XY8 32 
XY8 H3  H3  H 0 1 N N N N N N 12.872 -9.414  3.483  -4.638 2.873  1.145  H3  XY8 33 
XY8 H4  H4  H 0 1 N N N N N N 12.257 -11.778 5.332  -4.263 2.801  -1.304 H4  XY8 34 
XY8 H5  H5  H 0 1 N N N N N N 10.083 -10.637 5.681  -2.235 5.009  -0.731 H5  XY8 35 
XY8 H6  H6  H 0 1 N N N N N N 10.540 -9.388  4.473  -2.469 4.196  -2.297 H6  XY8 36 
XY8 H7  H7  H 0 1 N N N N N N 10.302 -11.092 3.957  -3.765 5.210  -1.618 H7  XY8 37 
XY8 H8  H8  H 0 1 N N N N N N 12.169 -10.229 12.191 -2.717 -3.681 0.631  H8  XY8 38 
XY8 H9  H9  H 0 1 N N N N N N 11.523 -14.652 12.570 -7.628 -3.171 0.344  H9  XY8 39 
XY8 H10 H10 H 0 1 N N N N N N 10.662 -15.045 11.043 -7.549 -2.612 -1.344 H10 XY8 40 
XY8 H11 H11 H 0 1 N N N N N N 12.437 -15.294 11.163 -6.943 -4.229 -0.913 H11 XY8 41 
XY8 H12 H12 H 0 1 N N N N N N 11.889 -13.822 8.906  -6.292 -0.642 -0.814 H12 XY8 42 
XY8 H13 H13 H 0 1 N N N N N N 12.732 -6.686  9.837  0.243  0.234  -1.461 H13 XY8 43 
XY8 H14 H14 H 0 1 N N N N N N 14.331 -7.391  9.421  0.607  -1.038 -0.269 H14 XY8 44 
XY8 H15 H15 H 0 1 N N N N N N 14.634 -5.754  7.623  2.658  0.211  -0.848 H15 XY8 45 
XY8 H16 H16 H 0 1 N N N N N N 14.249 -4.890  9.150  1.875  1.737  -0.374 H16 XY8 46 
XY8 H17 H17 H 0 1 N N N N N N 13.488 -3.605  6.237  3.889  0.871  2.538  H17 XY8 47 
XY8 H18 H18 H 0 1 N N N N N N 13.553 -2.987  7.922  3.714  2.003  1.176  H18 XY8 48 
XY8 H19 H19 H 0 1 N N N N N N 9.596  -0.497  8.461  5.943  -0.091 -2.434 H19 XY8 49 
XY8 H20 H20 H 0 1 N N N N N N 9.240  -2.319  4.600  6.903  -2.341 1.064  H20 XY8 50 
XY8 H21 H21 H 0 1 N N N N N N 11.333 -3.567  4.992  5.258  -1.041 2.352  H21 XY8 51 
XY8 H22 H22 H 0 1 N N N N N N 12.863 -6.075  5.907  1.282  2.097  1.975  H22 XY8 52 
XY8 H23 H23 H 0 1 N N N N N N 11.228 -5.380  6.170  1.645  0.825  3.166  H23 XY8 53 
XY8 H24 H24 H 0 1 N N N N N N 10.866 -6.920  8.072  0.014  -0.679 2.079  H24 XY8 54 
XY8 H25 H25 H 0 1 N N N N N N 11.262 -7.840  6.581  -0.770 0.847  2.554  H25 XY8 55 
XY8 H26 H26 H 0 1 N N N N N N 13.619 -9.738  5.924  -1.547 2.687  -0.237 H26 XY8 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XY8 C01 C02 SING N N 1  
XY8 C03 C02 SING N N 2  
XY8 C02 N04 SING N N 3  
XY8 C27 C28 DOUB Y N 4  
XY8 C27 C25 SING Y N 5  
XY8 C28 C21 SING Y N 6  
XY8 N04 C05 SING N N 7  
XY8 F26 C25 SING N N 8  
XY8 C25 C24 DOUB Y N 9  
XY8 C29 C30 SING N N 10 
XY8 C29 N19 SING N N 11 
XY8 C21 C20 SING N N 12 
XY8 C21 C22 DOUB Y N 13 
XY8 C20 N19 SING N N 14 
XY8 C30 N16 SING N N 15 
XY8 C05 N06 DOUB Y N 16 
XY8 C05 C15 SING Y N 17 
XY8 C24 C22 SING Y N 18 
XY8 N19 C18 SING N N 19 
XY8 N06 C07 SING Y N 20 
XY8 C22 F23 SING N N 21 
XY8 N16 C15 SING N N 22 
XY8 N16 C17 SING N N 23 
XY8 C18 C17 SING N N 24 
XY8 C15 N14 DOUB Y N 25 
XY8 C07 C13 DOUB Y N 26 
XY8 C07 C08 SING Y N 27 
XY8 C13 C11 SING Y N 28 
XY8 N14 C08 SING Y N 29 
XY8 C08 C09 DOUB Y N 30 
XY8 C11 C12 SING N N 31 
XY8 C11 N10 DOUB Y N 32 
XY8 C09 N10 SING Y N 33 
XY8 C01 H1  SING N N 34 
XY8 C01 H2  SING N N 35 
XY8 C01 H3  SING N N 36 
XY8 C02 H4  SING N N 37 
XY8 C03 H5  SING N N 38 
XY8 C03 H6  SING N N 39 
XY8 C03 H7  SING N N 40 
XY8 C09 H8  SING N N 41 
XY8 C12 H9  SING N N 42 
XY8 C12 H10 SING N N 43 
XY8 C12 H11 SING N N 44 
XY8 C13 H12 SING N N 45 
XY8 C17 H13 SING N N 46 
XY8 C17 H14 SING N N 47 
XY8 C18 H15 SING N N 48 
XY8 C18 H16 SING N N 49 
XY8 C20 H17 SING N N 50 
XY8 C20 H18 SING N N 51 
XY8 C24 H19 SING N N 52 
XY8 C27 H20 SING N N 53 
XY8 C28 H21 SING N N 54 
XY8 C29 H22 SING N N 55 
XY8 C29 H23 SING N N 56 
XY8 C30 H24 SING N N 57 
XY8 C30 H25 SING N N 58 
XY8 N04 H26 SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XY8 SMILES           ACDLabs              12.01 "CC(C)Nc1nc2cc(C)ncc2nc1N1CCN(Cc2ccc(F)cc2F)CC1"                                                                                                            
XY8 InChI            InChI                1.06  "InChI=1S/C22H26F2N6/c1-14(2)26-21-22(28-20-12-25-15(3)10-19(20)27-21)30-8-6-29(7-9-30)13-16-4-5-17(23)11-18(16)24/h4-5,10-12,14H,6-9,13H2,1-3H3,(H,26,27)" 
XY8 InChIKey         InChI                1.06  RWZKAEHGFIQDFV-UHFFFAOYSA-N                                                                                                                                 
XY8 SMILES_CANONICAL CACTVS               3.385 "CC(C)Nc1nc2cc(C)ncc2nc1N3CCN(CC3)Cc4ccc(F)cc4F"                                                                                                            
XY8 SMILES           CACTVS               3.385 "CC(C)Nc1nc2cc(C)ncc2nc1N3CCN(CC3)Cc4ccc(F)cc4F"                                                                                                            
XY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cn1)nc(c(n2)NC(C)C)N3CCN(CC3)Cc4ccc(cc4F)F"                                                                                                        
XY8 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cn1)nc(c(n2)NC(C)C)N3CCN(CC3)Cc4ccc(cc4F)F"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XY8 "SYSTEMATIC NAME" ACDLabs              12.01 "3-{4-[(2,4-difluorophenyl)methyl]piperazin-1-yl}-7-methyl-N-(propan-2-yl)pyrido[3,4-b]pyrazin-2-amine"         
XY8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[[2,4-bis(fluoranyl)phenyl]methyl]piperazin-1-yl]-7-methyl-~{N}-propan-2-yl-pyrido[3,4-b]pyrazin-2-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XY8 "Create component" 2023-06-05 RCSB 
XY8 "Initial release"  2024-12-04 RCSB 
# 
