data_XV8
# 
_chem_comp.id                                    XV8 
_chem_comp.name                                  "(4M)-4-(1-benzyl-1H-pyrrolo[2,3-b]pyridin-3-yl)-N-methyl-3-nitrobenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H18 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        386.403 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XV8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G6R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XV8 C11 C1  C 0  1 N N N N N N -12.124 13.322 52.776 7.147  -2.656 -0.784 C11 XV8 1  
XV8 C13 C2  C 0  1 Y N N N N N -13.375 7.863  45.579 -1.090 -0.333 1.058  C13 XV8 2  
XV8 C15 C3  C 0  1 Y N N N N N -11.780 9.404  45.040 -0.896 1.281  -0.523 C15 XV8 3  
XV8 C16 C4  C 0  1 Y N N N N N -10.883 10.464 44.858 -0.527 2.201  -1.505 C16 XV8 4  
XV8 C17 C5  C 0  1 Y N N N N N -10.176 10.535 43.646 -1.501 3.047  -2.002 C17 XV8 5  
XV8 C18 C6  C 0  1 Y N N N N N -10.369 9.555  42.608 -2.796 2.952  -1.516 C18 XV8 6  
XV8 C20 C7  C 0  1 N N N N N N -13.328 6.551  43.387 -3.530 -0.119 1.596  C20 XV8 7  
XV8 C21 C8  C 0  1 Y N N N N N -12.539 5.287  43.478 -4.318 -1.106 0.775  C21 XV8 8  
XV8 C22 C9  C 0  1 Y N N N N N -12.908 4.246  44.317 -4.095 -2.463 0.922  C22 XV8 9  
XV8 C23 C10 C 0  1 Y N N N N N -10.970 2.958  43.496 -5.765 -2.917 -0.733 C23 XV8 10 
XV8 C24 C11 C 0  1 Y N N N N N -10.631 4.029  42.657 -5.991 -1.561 -0.877 C24 XV8 11 
XV8 C25 C12 C 0  1 Y N N N N N -12.103 3.067  44.328 -4.819 -3.368 0.169  C25 XV8 12 
XV8 C26 C13 C 0  1 Y N N N N N -11.389 5.181  42.644 -5.267 -0.656 -0.123 C26 XV8 13 
XV8 C1  C14 C 0  1 Y N N N N N -12.692 9.004  46.059 -0.178 0.243  0.233  C1  XV8 14 
XV8 C2  C15 C 0  1 Y N N N N N -11.813 10.906 49.138 2.957  -1.683 -0.464 C2  XV8 15 
XV8 C3  C16 C 0  1 Y N N N N N -11.738 10.253 47.936 1.633  -1.362 -0.357 C3  XV8 16 
XV8 C4  C17 C 0  1 Y N N N N N -12.866 9.675  47.344 1.255  -0.104 0.118  C4  XV8 17 
XV8 C5  C18 C 0  1 Y N N N N N -14.107 9.783  48.037 2.231  0.826  0.485  C5  XV8 18 
XV8 C6  C19 C 0  1 Y N N N N N -14.215 10.418 49.288 3.554  0.507  0.379  C6  XV8 19 
XV8 C7  C20 C 0  1 Y N N N N N -13.045 10.972 49.817 3.933  -0.752 -0.097 C7  XV8 20 
XV8 C8  C21 C 0  1 N N N N N N -13.168 11.724 51.097 5.363  -1.099 -0.212 C8  XV8 21 
XV8 N9  N1  N 0  1 N N N N N N -12.113 12.493 51.512 5.728  -2.312 -0.670 N9  XV8 22 
XV8 O10 O1  O 0  1 N N N N N N -14.147 11.572 51.802 6.212  -0.289 0.107  O10 XV8 23 
XV8 N12 N2  N 0  1 Y N N N N N -12.865 7.599  44.282 -2.309 0.251  0.876  N12 XV8 24 
XV8 C14 C22 C 0  1 Y N N N N N -11.914 8.494  43.972 -2.229 1.239  -0.078 C14 XV8 25 
XV8 N19 N3  N 0  1 Y N N N N N -11.227 8.534  42.752 -3.122 2.074  -0.592 N19 XV8 26 
XV8 N27 N4  N 1  1 N N N N N N -15.374 9.235  47.451 1.829  2.160  0.988  N27 XV8 27 
XV8 O28 O2  O 0  1 N N N N N N -15.994 9.974  46.742 2.680  2.971  1.308  O28 XV8 28 
XV8 O29 O3  O -1 1 N N N N N N -15.804 8.108  47.731 0.649  2.445  1.082  O29 XV8 29 
XV8 H34 H1  H 0  1 N N N N N N -11.161 13.843 52.882 7.245  -3.671 -1.169 H34 XV8 30 
XV8 H36 H2  H 0  1 N N N N N N -12.937 14.061 52.723 7.636  -1.960 -1.465 H36 XV8 31 
XV8 H35 H3  H 0  1 N N N N N N -12.282 12.665 53.644 7.616  -2.594 0.198  H35 XV8 32 
XV8 H37 H4  H 0  1 N N N N N N -14.137 7.301  46.099 -0.882 -1.135 1.750  H37 XV8 33 
XV8 H38 H5  H 0  1 N N N N N N -10.739 11.207 45.629 0.490  2.251  -1.866 H38 XV8 34 
XV8 H39 H6  H 0  1 N N N N N N -9.474  11.340 43.489 -1.256 3.773  -2.763 H39 XV8 35 
XV8 H40 H7  H 0  1 N N N N N N -9.808  9.645  41.689 -3.555 3.614  -1.906 H40 XV8 36 
XV8 H41 H8  H 0  1 N N N N N N -14.376 6.324  43.632 -4.133 0.771  1.771  H41 XV8 37 
XV8 H42 H9  H 0  1 N N N N N N -13.266 6.925  42.354 -3.264 -0.572 2.552  H42 XV8 38 
XV8 H43 H10 H 0  1 N N N N N N -13.782 4.325  44.946 -3.356 -2.815 1.627  H43 XV8 39 
XV8 H44 H11 H 0  1 N N N N N N -10.370 2.060  43.505 -6.330 -3.624 -1.322 H44 XV8 40 
XV8 H45 H12 H 0  1 N N N N N N -9.767  3.951  42.014 -6.730 -1.208 -1.582 H45 XV8 41 
XV8 H46 H13 H 0  1 N N N N N N -12.365 2.248  44.982 -4.644 -4.428 0.283  H46 XV8 42 
XV8 H47 H14 H 0  1 N N N N N N -11.111 6.003  42.001 -5.445 0.404  -0.235 H47 XV8 43 
XV8 H30 H15 H 0  1 N N N N N N -10.933 11.367 49.562 3.248  -2.657 -0.827 H30 XV8 44 
XV8 H31 H16 H 0  1 N N N N N N -10.785 10.183 47.433 0.878  -2.081 -0.641 H31 XV8 45 
XV8 H32 H17 H 0  1 N N N N N N -15.156 10.475 49.814 4.308  1.226  0.662  H32 XV8 46 
XV8 H33 H18 H 0  1 N N N N N N -11.288 12.507 50.946 5.050  -2.958 -0.924 H33 XV8 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XV8 C1  C4  SING N N 1  
XV8 C1  C15 SING Y N 2  
XV8 C1  C13 DOUB Y N 3  
XV8 C2  C7  DOUB Y N 4  
XV8 C2  C3  SING Y N 5  
XV8 C3  C4  DOUB Y N 6  
XV8 C4  C5  SING Y N 7  
XV8 C5  C6  DOUB Y N 8  
XV8 C5  N27 SING N N 9  
XV8 C6  C7  SING Y N 10 
XV8 C7  C8  SING N N 11 
XV8 C8  N9  SING N N 12 
XV8 C8  O10 DOUB N N 13 
XV8 N9  C11 SING N N 14 
XV8 N12 C14 SING Y N 15 
XV8 N12 C13 SING Y N 16 
XV8 N12 C20 SING N N 17 
XV8 C14 C15 DOUB Y N 18 
XV8 C14 N19 SING Y N 19 
XV8 C15 C16 SING Y N 20 
XV8 C16 C17 DOUB Y N 21 
XV8 C17 C18 SING Y N 22 
XV8 C18 N19 DOUB Y N 23 
XV8 C20 C21 SING N N 24 
XV8 C21 C22 DOUB Y N 25 
XV8 C21 C26 SING Y N 26 
XV8 C22 C25 SING Y N 27 
XV8 C23 C24 SING Y N 28 
XV8 C23 C25 DOUB Y N 29 
XV8 C24 C26 DOUB Y N 30 
XV8 N27 O28 DOUB N N 31 
XV8 N27 O29 SING N N 32 
XV8 C11 H34 SING N N 33 
XV8 C11 H36 SING N N 34 
XV8 C11 H35 SING N N 35 
XV8 C13 H37 SING N N 36 
XV8 C16 H38 SING N N 37 
XV8 C17 H39 SING N N 38 
XV8 C18 H40 SING N N 39 
XV8 C20 H41 SING N N 40 
XV8 C20 H42 SING N N 41 
XV8 C22 H43 SING N N 42 
XV8 C23 H44 SING N N 43 
XV8 C24 H45 SING N N 44 
XV8 C25 H46 SING N N 45 
XV8 C26 H47 SING N N 46 
XV8 C2  H30 SING N N 47 
XV8 C3  H31 SING N N 48 
XV8 C6  H32 SING N N 49 
XV8 N9  H33 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XV8 SMILES           ACDLabs              12.01 "CNC(=O)c1ccc(c2cn(Cc3ccccc3)c3ncccc32)c(c1)[N+]([O-])=O"                                                                                     
XV8 InChI            InChI                1.06  "InChI=1S/C22H18N4O3/c1-23-22(27)16-9-10-17(20(12-16)26(28)29)19-14-25(13-15-6-3-2-4-7-15)21-18(19)8-5-11-24-21/h2-12,14H,13H2,1H3,(H,23,27)" 
XV8 InChIKey         InChI                1.06  RLABERRSBCGGQT-UHFFFAOYSA-N                                                                                                                   
XV8 SMILES_CANONICAL CACTVS               3.385 "CNC(=O)c1ccc(c2cn(Cc3ccccc3)c4ncccc24)c(c1)[N+]([O-])=O"                                                                                     
XV8 SMILES           CACTVS               3.385 "CNC(=O)c1ccc(c2cn(Cc3ccccc3)c4ncccc24)c(c1)[N+]([O-])=O"                                                                                     
XV8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc(c(c1)[N+](=O)[O-])c2cn(c3c2cccn3)Cc4ccccc4"                                                                                     
XV8 SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)c1ccc(c(c1)[N+](=O)[O-])c2cn(c3c2cccn3)Cc4ccccc4"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XV8 "SYSTEMATIC NAME" ACDLabs              12.01 "(4M)-4-(1-benzyl-1H-pyrrolo[2,3-b]pyridin-3-yl)-N-methyl-3-nitrobenzamide"   
XV8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-3-nitro-4-[1-(phenylmethyl)pyrrolo[2,3-b]pyridin-3-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XV8 "Create component" 2023-06-08 RCSB 
XV8 "Initial release"  2024-12-18 RCSB 
# 
