data_XL8
# 
_chem_comp.id                                    XL8 
_chem_comp.name                                  "N-[3,5-dichloro-2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)phenyl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H20 Cl4 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-05 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        546.231 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XL8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BIS 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XL8 C1  C1  C  0 1 Y N N N N N 22.230 -3.741  -6.386  6.444  -0.777 0.236  C1  XL8 1  
XL8 C2  C2  C  0 1 Y N N N N N 20.999 -4.394  -6.372  5.066  -0.947 0.249  C2  XL8 2  
XL8 C3  C3  C  0 1 Y N N N N N 19.933 -3.977  -7.174  4.245  0.012  -0.316 C3  XL8 3  
XL8 C4  C4  C  0 1 Y N N N N N 20.125 -2.848  -7.952  4.794  1.141  -0.894 C4  XL8 4  
XL8 C5  C5  C  0 1 Y N N N N N 21.343 -2.161  -7.953  6.172  1.315  -0.909 C5  XL8 5  
XL8 C6  C6  C  0 1 Y N N N N N 22.395 -2.620  -7.174  6.996  0.357  -0.338 C6  XL8 6  
XL8 O1  O1  O  0 1 N N N N N N 23.223 -4.196  -5.569  7.251  -1.720 0.791  O1  XL8 7  
XL8 O2  O2  O  0 1 N N N N N N 21.468 -1.066  -8.754  6.711  2.425  -1.477 O2  XL8 8  
XL8 C7  C7  C  0 1 N N N N N N 24.548 -4.302  -6.082  8.659  -1.480 0.741  C7  XL8 9  
XL8 C8  C8  C  0 1 N N N N N N 22.689 -0.333  -8.741  8.136  2.538  -1.456 C8  XL8 10 
XL8 CL1 CL1 CL 0 0 N N N N N N 20.809 -5.809  -5.393  4.374  -2.364 0.974  CL1 XL8 11 
XL8 CL2 CL2 CL 0 0 N N N N N N 18.852 -2.364  -9.027  3.761  2.343  -1.602 CL2 XL8 12 
XL8 C9  C9  C  0 1 N N N N N N 18.631 -4.741  -7.214  2.750  -0.175 -0.301 C9  XL8 13 
XL8 O3  O3  O  0 1 N N N N N N 18.811 -5.964  -7.955  2.209  0.405  0.887  O3  XL8 14 
XL8 C10 C10 C  0 1 Y N N N N N 17.978 -7.033  -7.716  0.862  0.322  1.057  C10 XL8 15 
XL8 C11 C11 C  0 1 Y N N N N N 16.701 -6.964  -7.175  0.253  0.860  2.185  C11 XL8 16 
XL8 N1  N1  N  0 1 Y N N N N N 15.962 -8.065  -7.009  -1.060 0.762  2.317  N1  XL8 17 
XL8 C12 C12 C  0 1 Y N N N N N 16.523 -9.241  -7.372  -1.791 0.161  1.391  C12 XL8 18 
XL8 N2  N2  N  0 1 Y N N N N N 17.754 -9.380  -7.903  -1.245 -0.363 0.304  N2  XL8 19 
XL8 C13 C13 C  0 1 Y N N N N N 18.463 -8.265  -8.085  0.061  -0.297 0.104  C13 XL8 20 
XL8 N3  N3  N  0 1 N N N N N N 15.839 -10.399 -7.153  -3.165 0.077  1.563  N3  XL8 21 
XL8 C14 C14 C  0 1 Y N N N N N 14.501 -10.536 -6.719  -3.969 -0.448 0.543  C14 XL8 22 
XL8 C15 C15 C  0 1 Y N N N N N 13.519 -10.981 -7.619  -4.995 0.321  -0.005 C15 XL8 23 
XL8 C16 C16 C  0 1 Y N N N N N 12.202 -11.072 -7.175  -5.787 -0.203 -1.015 C16 XL8 24 
XL8 C17 C17 C  0 1 Y N N N N N 11.885 -10.680 -5.885  -5.558 -1.487 -1.477 C17 XL8 25 
XL8 C18 C18 C  0 1 Y N N N N N 12.837 -10.190 -5.011  -4.540 -2.251 -0.934 C18 XL8 26 
XL8 C19 C19 C  0 1 Y N N N N N 14.154 -10.135 -5.432  -3.742 -1.733 0.070  C19 XL8 27 
XL8 N4  N4  N  0 1 N N N N N N 13.960 -11.433 -8.890  -5.225 1.621  0.465  N4  XL8 28 
XL8 C20 C20 C  0 1 N N N N N N 13.295 -11.364 -10.065 -6.481 2.108  0.512  C20 XL8 29 
XL8 C21 C21 C  0 1 N N N N N N 14.032 -11.945 -11.254 -6.742 3.463  1.118  C21 XL8 30 
XL8 C22 C22 C  0 1 N N N N N N 15.464 -11.473 -11.402 -8.239 3.774  1.047  C22 XL8 31 
XL8 O4  O4  O  0 1 N N N N N N 12.150 -10.955 -10.143 -7.402 1.455  0.067  O4  XL8 32 
XL8 CL3 CL3 CL 0 0 N N N N N N 15.367 -9.589  -4.319  -2.461 -2.692 0.743  CL3 XL8 33 
XL8 CL4 CL4 CL 0 0 N N N N N N 10.232 -10.746 -5.343  -6.551 -2.141 -2.742 CL4 XL8 34 
XL8 H1  H1  H  0 1 N N N N N N 23.342 -2.101  -7.184  8.068  0.491  -0.349 H1  XL8 35 
XL8 H2  H2  H  0 1 N N N N N N 25.217 -4.682  -5.296  8.977  -1.397 -0.298 H2  XL8 36 
XL8 H3  H3  H  0 1 N N N N N N 24.556 -4.995  -6.937  8.888  -0.553 1.266  H3  XL8 37 
XL8 H4  H4  H  0 1 N N N N N N 24.894 -3.311  -6.410  9.185  -2.307 1.217  H4  XL8 38 
XL8 H5  H5  H  0 1 N N N N N N 22.617 0.513   -9.441  8.434  3.468  -1.941 H5  XL8 39 
XL8 H6  H6  H  0 1 N N N N N N 22.878 0.046   -7.726  8.485  2.538  -0.424 H6  XL8 40 
XL8 H7  H7  H  0 1 N N N N N N 23.515 -0.992  -9.046  8.575  1.694  -1.988 H7  XL8 41 
XL8 H8  H8  H  0 1 N N N N N N 17.861 -4.127  -7.703  2.314  0.312  -1.174 H8  XL8 42 
XL8 H9  H9  H  0 1 N N N N N N 18.314 -4.978  -6.188  2.516  -1.239 -0.325 H9  XL8 43 
XL8 H10 H10 H  0 1 N N N N N N 16.299 -6.005  -6.884  0.843  1.352  2.944  H10 XL8 44 
XL8 H11 H11 H  0 1 N N N N N N 19.443 -8.332  -8.534  0.501  -0.725 -0.785 H11 XL8 45 
XL8 H12 H12 H  0 1 N N N N N N 16.341 -11.248 -7.318  -3.569 0.382  2.391  H12 XL8 46 
XL8 H13 H13 H  0 1 N N N N N N 11.432 -11.446 -7.833  -6.582 0.390  -1.441 H13 XL8 47 
XL8 H14 H14 H  0 1 N N N N N N 12.559 -9.858  -4.022  -4.366 -3.253 -1.298 H14 XL8 48 
XL8 H15 H15 H  0 1 N N N N N N 14.868 -11.851 -8.920  -4.481 2.171  0.756  H15 XL8 49 
XL8 H16 H16 H  0 1 N N N N N N 13.484 -11.668 -12.166 -6.420 3.463  2.160  H16 XL8 50 
XL8 H17 H17 H  0 1 N N N N N N 14.041 -13.040 -11.150 -6.187 4.221  0.566  H17 XL8 51 
XL8 H18 H18 H  0 1 N N N N N N 15.916 -11.944 -12.287 -8.794 3.015  1.599  H18 XL8 52 
XL8 H19 H19 H  0 1 N N N N N N 15.479 -10.380 -11.521 -8.427 4.753  1.485  H19 XL8 53 
XL8 H20 H20 H  0 1 N N N N N N 16.036 -11.752 -10.505 -8.561 3.773  0.005  H20 XL8 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XL8 C22 C21 SING N N 1  
XL8 C21 C20 SING N N 2  
XL8 O4  C20 DOUB N N 3  
XL8 C20 N4  SING N N 4  
XL8 CL2 C4  SING N N 5  
XL8 N4  C15 SING N N 6  
XL8 O2  C8  SING N N 7  
XL8 O2  C5  SING N N 8  
XL8 C13 N2  DOUB Y N 9  
XL8 C13 C10 SING Y N 10 
XL8 O3  C10 SING N N 11 
XL8 O3  C9  SING N N 12 
XL8 C5  C4  DOUB Y N 13 
XL8 C5  C6  SING Y N 14 
XL8 C4  C3  SING Y N 15 
XL8 N2  C12 SING Y N 16 
XL8 C10 C11 DOUB Y N 17 
XL8 C15 C16 DOUB Y N 18 
XL8 C15 C14 SING Y N 19 
XL8 C12 N3  SING N N 20 
XL8 C12 N1  DOUB Y N 21 
XL8 C9  C3  SING N N 22 
XL8 C11 N1  SING Y N 23 
XL8 C16 C17 SING Y N 24 
XL8 C6  C1  DOUB Y N 25 
XL8 C3  C2  DOUB Y N 26 
XL8 N3  C14 SING N N 27 
XL8 C14 C19 DOUB Y N 28 
XL8 C1  C2  SING Y N 29 
XL8 C1  O1  SING N N 30 
XL8 C2  CL1 SING N N 31 
XL8 C7  O1  SING N N 32 
XL8 C17 CL4 SING N N 33 
XL8 C17 C18 DOUB Y N 34 
XL8 C19 C18 SING Y N 35 
XL8 C19 CL3 SING N N 36 
XL8 C6  H1  SING N N 37 
XL8 C7  H2  SING N N 38 
XL8 C7  H3  SING N N 39 
XL8 C7  H4  SING N N 40 
XL8 C8  H5  SING N N 41 
XL8 C8  H6  SING N N 42 
XL8 C8  H7  SING N N 43 
XL8 C9  H8  SING N N 44 
XL8 C9  H9  SING N N 45 
XL8 C11 H10 SING N N 46 
XL8 C13 H11 SING N N 47 
XL8 N3  H12 SING N N 48 
XL8 C16 H13 SING N N 49 
XL8 C18 H14 SING N N 50 
XL8 N4  H15 SING N N 51 
XL8 C21 H16 SING N N 52 
XL8 C21 H17 SING N N 53 
XL8 C22 H18 SING N N 54 
XL8 C22 H19 SING N N 55 
XL8 C22 H20 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XL8 SMILES           ACDLabs              12.01 "c1(c(Cl)c(c(c(c1)OC)Cl)COc3cnc(Nc2c(cc(cc2NC(CC)=O)Cl)Cl)nc3)OC"                                                                                                        
XL8 InChI            InChI                1.03  "InChI=1S/C22H20Cl4N4O4/c1-4-18(31)29-15-6-11(23)5-14(24)21(15)30-22-27-8-12(9-28-22)34-10-13-19(25)16(32-2)7-17(33-3)20(13)26/h5-9H,4,10H2,1-3H3,(H,29,31)(H,27,28,30)" 
XL8 InChIKey         InChI                1.03  PKLZCNWCSPPNIU-UHFFFAOYSA-N                                                                                                                                              
XL8 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cc(Cl)cc(Cl)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"                                                                                                            
XL8 SMILES           CACTVS               3.385 "CCC(=O)Nc1cc(Cl)cc(Cl)c1Nc2ncc(OCc3c(Cl)c(OC)cc(OC)c3Cl)cn2"                                                                                                            
XL8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(cc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)Cl)Cl"                                                                                                            
XL8 SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)Nc1cc(cc(c1Nc2ncc(cn2)OCc3c(c(cc(c3Cl)OC)OC)Cl)Cl)Cl"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XL8 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3,5-dichloro-2-({5-[(2,6-dichloro-3,5-dimethoxyphenyl)methoxy]pyrimidin-2-yl}amino)phenyl]propanamide"                 
XL8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[2-[[5-[[2,6-bis(chloranyl)-3,5-dimethoxy-phenyl]methoxy]pyrimidin-2-yl]amino]-3,5-bis(chloranyl)phenyl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XL8 "Create component" 2017-11-05 RCSB 
XL8 "Initial release"  2019-07-10 RCSB 
XL8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            XL8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C22 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
