data_XI8
# 
_chem_comp.id                                    XI8 
_chem_comp.name                                  "2-[(5M,9aM)-7-(1-acetylpiperidin-4-yl)-4-oxo-4H-pyrido[1,2-a]pyrimidin-3-yl]-N-[(3,4-dichlorophenyl)methyl]-N-methylacetamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 Cl2 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        501.405 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XI8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G7G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XI8 C10 C1  C  0 1 N N N N N N -18.254 14.528 44.167 3.601  -2.901 0.739  C10 XI8 1  
XI8 C11 C2  C  0 1 N N N N N N -17.402 13.886 45.165 2.255  -2.909 0.329  C11 XI8 2  
XI8 C13 C3  C  0 1 N N N N N N -16.583 14.400 42.498 3.780  -0.661 -0.074 C13 XI8 3  
XI8 C15 C4  C  0 1 N N N N N N -15.175 12.964 45.615 0.431  -1.803 -0.660 C15 XI8 4  
XI8 C17 C5  C  0 1 N N N N N N -15.624 12.633 46.949 -0.339 -2.952 -0.450 C17 XI8 5  
XI8 C18 C6  C  0 1 N N N N N N -16.936 12.976 47.300 0.247  -4.048 0.154  C18 XI8 6  
XI8 C20 C7  C  0 1 N N N N N N -14.710 11.872 47.891 -1.784 -2.994 -0.877 C20 XI8 7  
XI8 C21 C8  C  0 1 N N N N N N -14.409 10.475 47.364 -2.645 -2.400 0.208  C21 XI8 8  
XI8 C23 C9  C  0 1 N N N N N N -16.324 14.568 41.044 4.607  0.578  -0.301 C23 XI8 9  
XI8 C24 C10 C  0 1 N N N N N N -16.909 13.931 38.717 6.618  1.507  -1.456 C24 XI8 10 
XI8 C26 C11 C  0 1 N N N N N N -14.584 14.697 39.207 5.924  2.385  0.812  C26 XI8 11 
XI8 C27 C12 C  0 1 N N N N N N -14.752 14.452 40.694 5.113  1.106  1.043  C27 XI8 12 
XI8 C28 C13 C  0 1 N N N N N N -14.996 12.714 37.647 8.273  2.382  0.122  C28 XI8 13 
XI8 C1  C14 C  0 1 Y N N N N N -12.516 8.376  45.798 -4.968 -0.272 0.867  C1  XI8 14 
XI8 C2  C15 C  0 1 Y N N N N N -12.944 7.268  45.027 -4.057 0.609  1.420  C2  XI8 15 
XI8 C3  C16 C  0 1 Y N N N N N -12.420 7.086  43.772 -4.189 1.968  1.203  C3  XI8 16 
XI8 C4  C17 C  0 1 Y N N N N N -11.521 8.018  43.328 -5.234 2.447  0.432  C4  XI8 17 
XI8 C5  C18 C  0 1 Y N N N N N -11.096 9.127  44.067 -6.145 1.564  -0.122 C5  XI8 18 
XI8 C6  C19 C  0 1 Y N N N N N -11.579 9.358  45.314 -6.011 0.205  0.096  C6  XI8 19 
XI8 CL7 CL1 CL 0 0 N N N N N N -9.859  10.145 43.424 -7.457 2.163  -1.089 CL7 XI8 20 
XI8 CL8 CL2 CL 0 0 N N N N N N -10.877 7.747  41.735 -5.401 4.153  0.160  CL8 XI8 21 
XI8 N9  N1  N  0 1 N N N N N N -13.228 9.836  47.745 -3.981 -2.331 0.045  N9  XI8 22 
XI8 C12 C20 C  0 1 N N N N N N -15.761 13.845 43.425 2.485  -0.689 -0.463 C12 XI8 23 
XI8 C14 C21 C  0 1 N N N N N N -17.882 14.782 42.931 4.356  -1.784 0.537  C14 XI8 24 
XI8 O16 O1  O  0 1 N N N N N N -13.992 12.799 45.145 -0.056 -0.818 -1.192 O16 XI8 25 
XI8 N19 N2  N  0 1 N N N N N N -17.754 13.571 46.369 1.517  -4.000 0.525  N19 XI8 26 
XI8 O22 O2  O  0 1 N N N N N N -15.203 9.884  46.630 -2.136 -1.983 1.226  O22 XI8 27 
XI8 N25 N3  N  0 1 N N N N N N -15.456 13.713 38.471 6.986  2.102  -0.164 N25 XI8 28 
XI8 O29 O3  O  0 1 N N N N N N -15.784 11.920 37.076 8.576  2.780  1.226  O29 XI8 29 
XI8 C30 C22 C  0 1 N N N N N N -13.491 12.572 37.452 9.335  2.200  -0.932 C30 XI8 30 
XI8 C31 C23 C  0 1 N N N N N N -17.167 13.592 40.214 5.799  0.238  -1.199 C31 XI8 31 
XI8 N32 N4  N  0 1 N N N N N N -16.089 13.575 44.705 1.723  -1.799 -0.265 N32 XI8 32 
XI8 C33 C24 C  0 1 N N N N N N -12.266 10.422 48.657 -4.596 -2.835 -1.185 C33 XI8 33 
XI8 C34 C25 C  0 1 N N N N N N -12.994 8.462  47.239 -4.819 -1.753 1.099  C34 XI8 34 
XI8 H38 H1  H  0 1 N N N N N N -19.253 14.812 44.463 4.032  -3.771 1.213  H38 XI8 35 
XI8 H41 H2  H  0 1 N N N N N N -17.303 12.774 48.296 -0.332 -4.943 0.324  H41 XI8 36 
XI8 H43 H3  H  0 1 N N N N N N -13.765 12.425 47.998 -1.908 -2.421 -1.795 H43 XI8 37 
XI8 H42 H4  H  0 1 N N N N N N -15.199 11.787 48.873 -2.081 -4.028 -1.051 H42 XI8 38 
XI8 H44 H5  H  0 1 N N N N N N -16.631 15.586 40.762 3.995  1.340  -0.784 H44 XI8 39 
XI8 H46 H6  H  0 1 N N N N N N -17.506 13.271 38.071 6.021  2.217  -2.028 H46 XI8 40 
XI8 H45 H7  H  0 1 N N N N N N -17.174 14.979 38.515 7.520  1.253  -2.012 H45 XI8 41 
XI8 H48 H8  H  0 1 N N N N N N -13.532 14.550 38.921 5.271  3.167  0.424  H48 XI8 42 
XI8 H47 H9  H  0 1 N N N N N N -14.891 15.724 38.961 6.367  2.712  1.752  H47 XI8 43 
XI8 H49 H10 H  0 1 N N N N N N -14.186 15.205 41.263 4.264  1.326  1.690  H49 XI8 44 
XI8 H50 H11 H  0 1 N N N N N N -14.386 13.447 40.951 5.746  0.354  1.515  H50 XI8 45 
XI8 H35 H12 H  0 1 N N N N N N -13.673 6.576  45.421 -3.242 0.236  2.022  H35 XI8 46 
XI8 H36 H13 H  0 1 N N N N N N -12.705 6.243  43.160 -3.478 2.656  1.636  H36 XI8 47 
XI8 H37 H14 H  0 1 N N N N N N -11.283 10.215 45.901 -6.723 -0.484 -0.335 H37 XI8 48 
XI8 H39 H15 H  0 1 N N N N N N -14.758 13.598 43.110 2.051  0.181  -0.933 H39 XI8 49 
XI8 H40 H16 H  0 1 N N N N N N -18.559 15.277 42.250 5.390  -1.764 0.847  H40 XI8 50 
XI8 H53 H17 H  0 1 N N N N N N -13.286 11.723 36.783 9.791  1.216  -0.823 H53 XI8 51 
XI8 H51 H18 H  0 1 N N N N N N -13.090 13.495 37.007 8.884  2.284  -1.921 H51 XI8 52 
XI8 H52 H19 H  0 1 N N N N N N -13.010 12.395 38.426 10.098 2.969  -0.815 H52 XI8 53 
XI8 H55 H20 H  0 1 N N N N N N -16.863 12.556 40.425 6.425  -0.506 -0.706 H55 XI8 54 
XI8 H54 H21 H  0 1 N N N N N N -18.234 13.717 40.452 5.438  -0.160 -2.147 H54 XI8 55 
XI8 H57 H22 H  0 1 N N N N N N -11.424 9.728  48.799 -4.849 -3.888 -1.061 H57 XI8 56 
XI8 H56 H23 H  0 1 N N N N N N -11.894 11.369 48.239 -5.502 -2.266 -1.398 H56 XI8 57 
XI8 H58 H24 H  0 1 N N N N N N -12.750 10.614 49.626 -3.896 -2.724 -2.013 H58 XI8 58 
XI8 H60 H25 H  0 1 N N N N N N -13.939 7.905  47.318 -4.351 -1.924 2.069  H60 XI8 59 
XI8 H59 H26 H  0 1 N N N N N N -12.234 7.989  47.878 -5.801 -2.225 1.082  H59 XI8 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XI8 C1  C6  DOUB Y N 1  
XI8 C1  C2  SING Y N 2  
XI8 C1  C34 SING N N 3  
XI8 C2  C3  DOUB Y N 4  
XI8 C3  C4  SING Y N 5  
XI8 C4  CL8 SING N N 6  
XI8 C4  C5  DOUB Y N 7  
XI8 C5  C6  SING Y N 8  
XI8 C5  CL7 SING N N 9  
XI8 N9  C21 SING N N 10 
XI8 N9  C33 SING N N 11 
XI8 N9  C34 SING N N 12 
XI8 C10 C11 SING N N 13 
XI8 C10 C14 DOUB N N 14 
XI8 C11 N19 DOUB N N 15 
XI8 C11 N32 SING N N 16 
XI8 C12 N32 SING N N 17 
XI8 C12 C13 DOUB N N 18 
XI8 C13 C23 SING N N 19 
XI8 C13 C14 SING N N 20 
XI8 C15 O16 DOUB N N 21 
XI8 C15 C17 SING N N 22 
XI8 C15 N32 SING N N 23 
XI8 C17 C18 DOUB N N 24 
XI8 C17 C20 SING N N 25 
XI8 C18 N19 SING N N 26 
XI8 C20 C21 SING N N 27 
XI8 C21 O22 DOUB N N 28 
XI8 C23 C27 SING N N 29 
XI8 C23 C31 SING N N 30 
XI8 C24 C31 SING N N 31 
XI8 C24 N25 SING N N 32 
XI8 N25 C26 SING N N 33 
XI8 N25 C28 SING N N 34 
XI8 C26 C27 SING N N 35 
XI8 C28 O29 DOUB N N 36 
XI8 C28 C30 SING N N 37 
XI8 C10 H38 SING N N 38 
XI8 C18 H41 SING N N 39 
XI8 C20 H43 SING N N 40 
XI8 C20 H42 SING N N 41 
XI8 C23 H44 SING N N 42 
XI8 C24 H46 SING N N 43 
XI8 C24 H45 SING N N 44 
XI8 C26 H48 SING N N 45 
XI8 C26 H47 SING N N 46 
XI8 C27 H49 SING N N 47 
XI8 C27 H50 SING N N 48 
XI8 C2  H35 SING N N 49 
XI8 C3  H36 SING N N 50 
XI8 C6  H37 SING N N 51 
XI8 C12 H39 SING N N 52 
XI8 C14 H40 SING N N 53 
XI8 C30 H53 SING N N 54 
XI8 C30 H51 SING N N 55 
XI8 C30 H52 SING N N 56 
XI8 C31 H55 SING N N 57 
XI8 C31 H54 SING N N 58 
XI8 C33 H57 SING N N 59 
XI8 C33 H56 SING N N 60 
XI8 C33 H58 SING N N 61 
XI8 C34 H60 SING N N 62 
XI8 C34 H59 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XI8 SMILES           ACDLabs              12.01 "O=C(C)N1CCC(CC1)C=1C=CC2=NC=C(CC(=O)N(C)Cc3ccc(Cl)c(Cl)c3)C(=O)N2C=1"                                                                                                  
XI8 InChI            InChI                1.06  "InChI=1S/C25H26Cl2N4O3/c1-16(32)30-9-7-18(8-10-30)19-4-6-23-28-13-20(25(34)31(23)15-19)12-24(33)29(2)14-17-3-5-21(26)22(27)11-17/h3-6,11,13,15,18H,7-10,12,14H2,1-2H3" 
XI8 InChIKey         InChI                1.06  MPYRGYCVCBKWMZ-UHFFFAOYSA-N                                                                                                                                             
XI8 SMILES_CANONICAL CACTVS               3.385 "CN(Cc1ccc(Cl)c(Cl)c1)C(=O)CC2=CN=C3C=CC(=CN3C2=O)C4CCN(CC4)C(C)=O"                                                                                                     
XI8 SMILES           CACTVS               3.385 "CN(Cc1ccc(Cl)c(Cl)c1)C(=O)CC2=CN=C3C=CC(=CN3C2=O)C4CCN(CC4)C(C)=O"                                                                                                     
XI8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC(CC1)C2=CN3C(=NC=C(C3=O)CC(=O)N(C)Cc4ccc(c(c4)Cl)Cl)C=C2"                                                                                                   
XI8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCC(CC1)C2=CN3C(=NC=C(C3=O)CC(=O)N(C)Cc4ccc(c(c4)Cl)Cl)C=C2"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XI8 "SYSTEMATIC NAME" ACDLabs              12.01 "2-[(5M,9aM)-7-(1-acetylpiperidin-4-yl)-4-oxo-4H-pyrido[1,2-a]pyrimidin-3-yl]-N-[(3,4-dichlorophenyl)methyl]-N-methylacetamide"         
XI8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(3,4-dichlorophenyl)methyl]-2-[7-(1-ethanoylpiperidin-4-yl)-4-oxidanylidene-pyrido[1,2-a]pyrimidin-3-yl]-~{N}-methyl-ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XI8 "Create component" 2023-06-06 RCSB 
XI8 "Initial release"  2024-12-18 RCSB 
# 
