data_XC8
# 
_chem_comp.id                                    XC8 
_chem_comp.name                                  
;4'-fluoro-6-(trifluoromethyl)[1,1'-biphenyl]-2-yl 2-acetamido-2-deoxy-beta-D-galactopyranoside
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H21 F4 N O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-30 
_chem_comp.pdbx_modified_date                    2024-02-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        459.388 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XC8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8USM 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XC8 C11  C1  C 0 1 N N N N N N -8.231  9.979  -7.530  4.342  -2.537 1.234  C11  XC8 1  
XC8 C10  C2  C 0 1 N N R N N N -7.147  10.535 -8.399  3.913  -1.491 0.204  C10  XC8 2  
XC8 C01  C3  C 0 1 N N N N N N -2.210  14.500 -10.730 0.727  3.810  -2.140 C01  XC8 3  
XC8 C02  C4  C 0 1 N N N N N N -3.073  13.920 -9.583  1.224  2.821  -1.118 C02  XC8 4  
XC8 C05  C5  C 0 1 N N R N N N -4.887  12.227 -8.906  2.789  1.099  -0.392 C05  XC8 5  
XC8 C06  C6  C 0 1 N N R N N N -4.738  10.739 -8.902  4.281  0.838  -0.617 C06  XC8 6  
XC8 C08  C7  C 0 1 N N R N N N -5.754  10.193 -7.951  4.757  -0.226 0.378  C08  XC8 7  
XC8 C14  C8  C 0 1 N N S N N N -6.318  12.697 -9.231  2.020  -0.217 -0.536 C14  XC8 8  
XC8 C16  C9  C 0 1 Y N N N N N -7.444  14.745 -9.512  -0.208 -1.040 -0.461 C16  XC8 9  
XC8 C17  C10 C 0 1 Y N N N N N -8.440  14.187 -10.270 0.287  -2.262 -0.884 C17  XC8 10 
XC8 C18  C11 C 0 1 Y N N N N N -9.491  15.023 -10.776 -0.571 -3.330 -1.069 C18  XC8 11 
XC8 C19  C12 C 0 1 Y N N N N N -9.496  16.413 -10.473 -1.926 -3.186 -0.834 C19  XC8 12 
XC8 C20  C13 C 0 1 Y N N N N N -8.475  16.959 -9.694  -2.433 -1.974 -0.412 C20  XC8 13 
XC8 C21  C14 C 0 1 N N N N N N -8.448  18.456 -9.356  -3.911 -1.822 -0.156 C21  XC8 14 
XC8 C25  C15 C 0 1 Y N N N N N -7.451  16.135 -9.215  -1.578 -0.891 -0.222 C25  XC8 15 
XC8 C26  C16 C 0 1 Y N N N N N -6.277  16.636 -8.335  -2.117 0.412  0.238  C26  XC8 16 
XC8 C27  C17 C 0 1 Y N N N N N -6.422  16.666 -6.953  -2.989 1.134  -0.576 C27  XC8 17 
XC8 C28  C18 C 0 1 Y N N N N N -5.351  17.099 -6.149  -3.487 2.346  -0.144 C28  XC8 18 
XC8 C29  C19 C 0 1 Y N N N N N -4.141  17.484 -6.745  -3.123 2.846  1.095  C29  XC8 19 
XC8 C31  C20 C 0 1 Y N N N N N -3.994  17.441 -8.146  -2.256 2.132  1.907  C31  XC8 20 
XC8 C32  C21 C 0 1 Y N N N N N -5.053  17.013 -8.943  -1.758 0.916  1.487  C32  XC8 21 
XC8 F22  F1  F 0 1 N N N N N N -8.535  18.647 -8.013  -4.556 -3.036 -0.414 F22  XC8 22 
XC8 F23  F2  F 0 1 N N N N N N -9.549  19.041 -9.963  -4.118 -1.458 1.178  F23  XC8 23 
XC8 F24  F3  F 0 1 N N N N N N -7.266  18.992 -9.817  -4.430 -0.831 -0.996 F24  XC8 24 
XC8 F30  F4  F 0 1 N N N N N N -3.083  17.908 -5.987  -3.613 4.033  1.514  F30  XC8 25 
XC8 N04  N1  N 0 1 N N N N N N -4.008  12.845 -9.934  2.305  2.062  -1.385 N04  XC8 26 
XC8 O03  O1  O 0 1 N N N N N N -2.955  14.336 -8.446  0.652  2.707  -0.055 O03  XC8 27 
XC8 O07  O2  O 0 1 N N N N N N -3.391  10.444 -8.468  5.015  2.047  -0.412 O07  XC8 28 
XC8 O09  O3  O 0 1 N N N N N N -5.439  10.765 -6.673  4.609  0.267  1.711  O09  XC8 29 
XC8 O12  O4  O 0 1 N N N N N N -8.382  10.729 -6.359  3.636  -3.756 0.998  O12  XC8 30 
XC8 O13  O5  O 0 1 N N N N N N -7.326  12.042 -8.414  2.533  -1.171 0.396  O13  XC8 31 
XC8 O15  O6  O 0 1 N N N N N N -6.359  14.038 -8.962  0.634  0.009  -0.273 O15  XC8 32 
XC8 H111 H1  H 0 0 N N N N N N -9.179  9.992  -8.088  5.414  -2.714 1.147  H111 XC8 33 
XC8 H112 H2  H 0 0 N N N N N N -7.978  8.943  -7.261  4.115  -2.174 2.237  H112 XC8 34 
XC8 H101 H3  H 0 0 N N N N N N -7.288  10.158 -9.423  4.058  -1.889 -0.800 H101 XC8 35 
XC8 H013 H4  H 0 0 N N N N N N -1.545  15.280 -10.331 1.215  4.772  -1.982 H013 XC8 36 
XC8 H012 H5  H 0 0 N N N N N N -1.605  13.697 -11.176 0.958  3.446  -3.141 H012 XC8 37 
XC8 H011 H6  H 0 0 N N N N N N -2.866  14.935 -11.498 -0.352 3.929  -2.036 H011 XC8 38 
XC8 H051 H7  H 0 0 N N N N N N -4.610  12.617 -7.915  2.636  1.502  0.609  H051 XC8 39 
XC8 H061 H8  H 0 0 N N N N N N -4.917  10.341 -9.912  4.440  0.483  -1.635 H061 XC8 40 
XC8 H081 H9  H 0 0 N N N N N N -5.652  9.099  -7.906  5.805  -0.458 0.189  H081 XC8 41 
XC8 H141 H10 H 0 0 N N N N N N -6.518  12.502 -10.295 2.140  -0.598 -1.550 H141 XC8 42 
XC8 H171 H11 H 0 0 N N N N N N -8.434  13.129 -10.484 1.344  -2.381 -1.069 H171 XC8 43 
XC8 H181 H12 H 0 0 N N N N N N -10.276 14.598 -11.385 -0.181 -4.282 -1.400 H181 XC8 44 
XC8 H191 H13 H 0 0 N N N N N N -10.289 17.045 -10.845 -2.590 -4.025 -0.982 H191 XC8 45 
XC8 H271 H14 H 0 0 N N N N N N -7.352  16.359 -6.498  -3.273 0.746  -1.543 H271 XC8 46 
XC8 H281 H15 H 0 0 N N N N N N -5.461  17.135 -5.075  -4.163 2.906  -0.774 H281 XC8 47 
XC8 H311 H16 H 0 0 N N N N N N -3.061  17.740 -8.601  -1.974 2.525  2.873  H311 XC8 48 
XC8 H321 H17 H 0 0 N N N N N N -4.943  16.969 -10.016 -1.086 0.358  2.122  H321 XC8 49 
XC8 H041 H18 H 0 0 N N N N N N -4.055  12.523 -10.880 2.763  2.152  -2.236 H041 XC8 50 
XC8 H071 H19 H 0 0 N N N N N N -3.261  9.503  -8.454  5.969  1.954  -0.538 H071 XC8 51 
XC8 H091 H20 H 0 0 N N N N N N -6.057  10.451 -6.024  4.888  -0.357 2.395  H091 XC8 52 
XC8 H121 H21 H 0 0 N N N N N N -9.075  10.353 -5.829  3.859  -4.466 1.615  H121 XC8 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XC8 C18 C19  DOUB Y N 1  
XC8 C18 C17  SING Y N 2  
XC8 C01 C02  SING N N 3  
XC8 C19 C20  SING Y N 4  
XC8 C17 C16  DOUB Y N 5  
XC8 F23 C21  SING N N 6  
XC8 N04 C02  SING N N 7  
XC8 N04 C05  SING N N 8  
XC8 F24 C21  SING N N 9  
XC8 C20 C21  SING N N 10 
XC8 C20 C25  DOUB Y N 11 
XC8 C02 O03  DOUB N N 12 
XC8 C16 C25  SING Y N 13 
XC8 C16 O15  SING N N 14 
XC8 C21 F22  SING N N 15 
XC8 C14 O15  SING N N 16 
XC8 C14 C05  SING N N 17 
XC8 C14 O13  SING N N 18 
XC8 C25 C26  SING N N 19 
XC8 C32 C26  DOUB Y N 20 
XC8 C32 C31  SING Y N 21 
XC8 C05 C06  SING N N 22 
XC8 C06 O07  SING N N 23 
XC8 C06 C08  SING N N 24 
XC8 O13 C10  SING N N 25 
XC8 C10 C08  SING N N 26 
XC8 C10 C11  SING N N 27 
XC8 C26 C27  SING Y N 28 
XC8 C31 C29  DOUB Y N 29 
XC8 C08 O09  SING N N 30 
XC8 C11 O12  SING N N 31 
XC8 C27 C28  DOUB Y N 32 
XC8 C29 C28  SING Y N 33 
XC8 C29 F30  SING N N 34 
XC8 C11 H111 SING N N 35 
XC8 C11 H112 SING N N 36 
XC8 C10 H101 SING N N 37 
XC8 C01 H013 SING N N 38 
XC8 C01 H012 SING N N 39 
XC8 C01 H011 SING N N 40 
XC8 C05 H051 SING N N 41 
XC8 C06 H061 SING N N 42 
XC8 C08 H081 SING N N 43 
XC8 C14 H141 SING N N 44 
XC8 C17 H171 SING N N 45 
XC8 C18 H181 SING N N 46 
XC8 C19 H191 SING N N 47 
XC8 C27 H271 SING N N 48 
XC8 C28 H281 SING N N 49 
XC8 C31 H311 SING N N 50 
XC8 C32 H321 SING N N 51 
XC8 N04 H041 SING N N 52 
XC8 O07 H071 SING N N 53 
XC8 O09 H091 SING N N 54 
XC8 O12 H121 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XC8 SMILES           ACDLabs              12.01 "FC(F)(F)c1cccc(OC2OC(CO)C(O)C(O)C2NC(C)=O)c1c1ccc(F)cc1"                                                                                                                                    
XC8 InChI            InChI                1.06  "InChI=1S/C21H21F4NO6/c1-10(28)26-17-19(30)18(29)15(9-27)32-20(17)31-14-4-2-3-13(21(23,24)25)16(14)11-5-7-12(22)8-6-11/h2-8,15,17-20,27,29-30H,9H2,1H3,(H,26,28)/t15-,17-,18+,19-,20-/m1/s1" 
XC8 InChIKey         InChI                1.06  HRLDWJXNEKTIOQ-XIKSMUEASA-N                                                                                                                                                                  
XC8 SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)O[C@H]1Oc2cccc(c2c3ccc(F)cc3)C(F)(F)F"                                                                                                            
XC8 SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1Oc2cccc(c2c3ccc(F)cc3)C(F)(F)F"                                                                                                                     
XC8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1Oc2cccc(c2c3ccc(cc3)F)C(F)(F)F)CO)O)O"                                                                                                               
XC8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1Oc2cccc(c2c3ccc(cc3)F)C(F)(F)F)CO)O)O"                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XC8 "SYSTEMATIC NAME" ACDLabs              12.01 
;4'-fluoro-6-(trifluoromethyl)[1,1'-biphenyl]-2-yl 2-acetamido-2-deoxy-beta-D-galactopyranoside
;
XC8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S},3~{R},4~{R},5~{R},6~{R})-2-[2-(4-fluorophenyl)-3-(trifluoromethyl)phenoxy]-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XC8 "Create component" 2023-10-30 RCSB 
XC8 "Initial release"  2024-02-14 RCSB 
# 
