data_XB8
# 
_chem_comp.id                                    XB8 
_chem_comp.name                                  "~{N}-[3-(2-fluorophenyl)propyl]-~{N}-[(3-methoxy-2-phenylmethoxy-phenyl)methyl]cyclobutanamine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H32 F N O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-06 
_chem_comp.pdbx_modified_date                    2023-06-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.558 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XB8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CGO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XB8 C01 C1  C 0 1 N N N -14.058 -38.023 -21.020 3.655  -3.974 -1.961 C01 XB8 1  
XB8 C03 C2  C 0 1 Y N N -15.102 -39.703 -22.353 2.469  -2.788 -0.275 C03 XB8 2  
XB8 C04 C3  C 0 1 Y N N -13.852 -40.342 -22.530 2.058  -4.015 0.221  C04 XB8 3  
XB8 C05 C4  C 0 1 Y N N -13.797 -41.650 -23.073 1.242  -4.072 1.335  C05 XB8 4  
XB8 C06 C5  C 0 1 Y N N -15.000 -42.323 -23.439 0.833  -2.906 1.956  C06 XB8 5  
XB8 C07 C6  C 0 1 Y N N -16.277 -41.693 -23.270 1.239  -1.679 1.467  C07 XB8 6  
XB8 C08 C7  C 0 1 N N N -17.605 -42.487 -23.690 0.792  -0.411 2.147  C08 XB8 7  
XB8 C10 C8  C 0 1 N N N -19.429 -43.737 -22.510 -1.500 -0.658 1.404  C10 XB8 8  
XB8 C11 C9  C 0 1 N N N -19.874 -42.426 -21.950 -2.527 -0.127 0.403  C11 XB8 9  
XB8 C12 C10 C 0 1 N N N -20.598 -42.516 -20.585 -3.772 -1.016 0.428  C12 XB8 10 
XB8 C13 C11 C 0 1 Y N N -21.473 -41.265 -20.363 -4.783 -0.493 -0.558 C13 XB8 11 
XB8 C14 C12 C 0 1 Y N N -20.909 -40.082 -19.813 -4.909 -1.086 -1.800 C14 XB8 12 
XB8 C15 C13 C 0 1 Y N N -21.705 -38.913 -19.616 -5.837 -0.605 -2.706 C15 XB8 13 
XB8 C16 C14 C 0 1 Y N N -23.091 -38.910 -19.997 -6.640 0.469  -2.370 C16 XB8 14 
XB8 C17 C15 C 0 1 Y N N -23.691 -40.059 -20.555 -6.516 1.063  -1.129 C17 XB8 15 
XB8 C18 C16 C 0 1 Y N N -22.866 -41.201 -20.735 -5.591 0.580  -0.219 C18 XB8 16 
XB8 C20 C17 C 0 1 N N N -17.479 -44.994 -23.330 -0.611 1.544  1.875  C20 XB8 17 
XB8 C21 C18 C 0 1 N N N -17.428 -46.173 -22.266 0.628  2.444  2.017  C21 XB8 18 
XB8 C22 C19 C 0 1 N N N -18.333 -47.057 -23.212 -0.238 3.590  1.467  C22 XB8 19 
XB8 C23 C20 C 0 1 N N N -18.602 -45.807 -24.131 -1.089 2.510  0.778  C23 XB8 20 
XB8 C24 C21 C 0 1 Y N N -16.317 -40.362 -22.707 2.062  -1.615 0.354  C24 XB8 21 
XB8 C26 C22 C 0 1 N N N -18.000 -38.902 -23.662 3.741  0.068  0.296  C26 XB8 22 
XB8 C27 C23 C 0 1 Y N N -19.391 -38.299 -23.438 4.072  1.342  -0.439 C27 XB8 23 
XB8 C28 C24 C 0 1 Y N N -20.531 -39.150 -23.339 3.838  2.566  0.159  C28 XB8 24 
XB8 C29 C25 C 0 1 Y N N -21.811 -38.599 -23.126 4.142  3.734  -0.515 C29 XB8 25 
XB8 C30 C26 C 0 1 Y N N -21.963 -37.206 -23.003 4.680  3.677  -1.788 C30 XB8 26 
XB8 C31 C27 C 0 1 Y N N -20.849 -36.354 -23.104 4.914  2.453  -2.385 C31 XB8 27 
XB8 C32 C28 C 0 1 Y N N -19.571 -36.900 -23.321 4.615  1.285  -1.709 C32 XB8 28 
XB8 F19 F1  F 0 1 N N N -23.494 -42.306 -21.290 -5.470 1.160  0.995  F19 XB8 29 
XB8 N09 N1  N 0 1 N N N -17.965 -43.684 -22.773 -0.305 0.196  1.380  N09 XB8 30 
XB8 O02 O1  O 0 1 N N N -15.175 -38.389 -21.812 3.273  -2.730 -1.371 O02 XB8 31 
XB8 O25 O2  O 0 1 N N N -17.593 -39.732 -22.553 2.463  -0.408 -0.129 O25 XB8 32 
XB8 H1  H1  H 0 1 N N N -14.195 -36.999 -20.643 2.764  -4.514 -2.279 H1  XB8 33 
XB8 H2  H2  H 0 1 N N N -13.968 -38.717 -20.171 4.294  -3.785 -2.824 H2  XB8 34 
XB8 H3  H3  H 0 1 N N N -13.144 -38.070 -21.631 4.200  -4.571 -1.229 H3  XB8 35 
XB8 H4  H4  H 0 1 N N N -12.941 -39.834 -22.252 2.376  -4.926 -0.263 H4  XB8 36 
XB8 H5  H5  H 0 1 N N N -12.843 -42.138 -23.210 0.922  -5.029 1.720  H5  XB8 37 
XB8 H6  H6  H 0 1 N N N -14.948 -43.321 -23.849 0.191  -2.955 2.823  H6  XB8 38 
XB8 H7  H7  H 0 1 N N N -18.446 -41.779 -23.674 0.446  -0.642 3.155  H7  XB8 39 
XB8 H8  H8  H 0 1 N N N -17.466 -42.869 -24.712 1.627  0.287  2.201  H8  XB8 40 
XB8 H9  H9  H 0 1 N N N -19.965 -43.937 -23.450 -1.931 -0.651 2.405  H9  XB8 41 
XB8 H10 H10 H 0 1 N N N -19.644 -44.538 -21.788 -1.224 -1.678 1.135  H10 XB8 42 
XB8 H11 H11 H 0 1 N N N -18.987 -41.788 -21.825 -2.803 0.893  0.672  H11 XB8 43 
XB8 H12 H12 H 0 1 N N N -20.561 -41.961 -22.672 -2.096 -0.134 -0.598 H12 XB8 44 
XB8 H13 H13 H 0 1 N N N -21.235 -43.413 -20.570 -3.495 -2.036 0.159  H13 XB8 45 
XB8 H14 H14 H 0 1 N N N -19.850 -42.584 -19.781 -4.203 -1.009 1.429  H14 XB8 46 
XB8 H15 H15 H 0 1 N N N -19.864 -40.067 -19.540 -4.282 -1.925 -2.063 H15 XB8 47 
XB8 H16 H16 H 0 1 N N N -21.265 -38.029 -19.180 -5.934 -1.070 -3.676 H16 XB8 48 
XB8 H17 H17 H 0 1 N N N -23.681 -38.017 -19.854 -7.363 0.843  -3.079 H17 XB8 49 
XB8 H18 H18 H 0 1 N N N -24.734 -40.069 -20.834 -7.143 1.903  -0.867 H18 XB8 50 
XB8 H19 H19 H 0 1 N N N -16.543 -44.909 -23.902 -1.248 1.536  2.760  H19 XB8 51 
XB8 H20 H20 H 0 1 N N N -16.421 -46.582 -22.095 0.944  2.593  3.050  H20 XB8 52 
XB8 H21 H21 H 0 1 N N N -17.893 -45.927 -21.300 1.450  2.162  1.360  H21 XB8 53 
XB8 H22 H22 H 0 1 N N N -19.234 -47.457 -22.725 -0.774 4.141  2.239  H22 XB8 54 
XB8 H23 H23 H 0 1 N N N -17.794 -47.874 -23.713 0.290  4.241  0.771  H23 XB8 55 
XB8 H24 H24 H 0 1 N N N -19.615 -45.388 -24.038 -0.737 2.247  -0.219 H24 XB8 56 
XB8 H25 H25 H 0 1 N N N -18.369 -45.970 -25.194 -2.160 2.711  0.811  H25 XB8 57 
XB8 H26 H26 H 0 1 N N N -18.019 -39.513 -24.576 4.500  -0.684 0.079  H26 XB8 58 
XB8 H27 H27 H 0 1 N N N -17.273 -38.086 -23.782 3.719  0.263  1.368  H27 XB8 59 
XB8 H28 H28 H 0 1 N N N -20.413 -40.220 -23.427 3.418  2.609  1.153  H28 XB8 60 
XB8 H29 H29 H 0 1 N N N -22.674 -39.245 -23.057 3.958  4.690  -0.048 H29 XB8 61 
XB8 H30 H30 H 0 1 N N N -22.943 -36.787 -22.830 4.917  4.590  -2.315 H30 XB8 62 
XB8 H31 H31 H 0 1 N N N -20.974 -35.285 -23.015 5.334  2.409  -3.379 H31 XB8 63 
XB8 H32 H32 H 0 1 N N N -18.717 -36.244 -23.399 4.802  0.329  -2.175 H32 XB8 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XB8 C23 C20 SING N N 1  
XB8 C23 C22 SING N N 2  
XB8 C08 C07 SING N N 3  
XB8 C08 N09 SING N N 4  
XB8 C26 C27 SING N N 5  
XB8 C26 O25 SING N N 6  
XB8 C06 C07 DOUB Y N 7  
XB8 C06 C05 SING Y N 8  
XB8 C27 C28 DOUB Y N 9  
XB8 C27 C32 SING Y N 10 
XB8 C28 C29 SING Y N 11 
XB8 C20 N09 SING N N 12 
XB8 C20 C21 SING N N 13 
XB8 C32 C31 DOUB Y N 14 
XB8 C07 C24 SING Y N 15 
XB8 C22 C21 SING N N 16 
XB8 C29 C30 DOUB Y N 17 
XB8 C31 C30 SING Y N 18 
XB8 C05 C04 DOUB Y N 19 
XB8 N09 C10 SING N N 20 
XB8 C24 O25 SING N N 21 
XB8 C24 C03 DOUB Y N 22 
XB8 C04 C03 SING Y N 23 
XB8 C10 C11 SING N N 24 
XB8 C03 O02 SING N N 25 
XB8 C11 C12 SING N N 26 
XB8 O02 C01 SING N N 27 
XB8 F19 C18 SING N N 28 
XB8 C18 C17 DOUB Y N 29 
XB8 C18 C13 SING Y N 30 
XB8 C12 C13 SING N N 31 
XB8 C17 C16 SING Y N 32 
XB8 C13 C14 DOUB Y N 33 
XB8 C16 C15 DOUB Y N 34 
XB8 C14 C15 SING Y N 35 
XB8 C01 H1  SING N N 36 
XB8 C01 H2  SING N N 37 
XB8 C01 H3  SING N N 38 
XB8 C04 H4  SING N N 39 
XB8 C05 H5  SING N N 40 
XB8 C06 H6  SING N N 41 
XB8 C08 H7  SING N N 42 
XB8 C08 H8  SING N N 43 
XB8 C10 H9  SING N N 44 
XB8 C10 H10 SING N N 45 
XB8 C11 H11 SING N N 46 
XB8 C11 H12 SING N N 47 
XB8 C12 H13 SING N N 48 
XB8 C12 H14 SING N N 49 
XB8 C14 H15 SING N N 50 
XB8 C15 H16 SING N N 51 
XB8 C16 H17 SING N N 52 
XB8 C17 H18 SING N N 53 
XB8 C20 H19 SING N N 54 
XB8 C21 H20 SING N N 55 
XB8 C21 H21 SING N N 56 
XB8 C22 H22 SING N N 57 
XB8 C22 H23 SING N N 58 
XB8 C23 H24 SING N N 59 
XB8 C23 H25 SING N N 60 
XB8 C26 H26 SING N N 61 
XB8 C26 H27 SING N N 62 
XB8 C28 H28 SING N N 63 
XB8 C29 H29 SING N N 64 
XB8 C30 H30 SING N N 65 
XB8 C31 H31 SING N N 66 
XB8 C32 H32 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XB8 InChI            InChI                1.06  "InChI=1S/C28H32FNO2/c1-31-27-18-7-13-24(28(27)32-21-22-10-3-2-4-11-22)20-30(25-15-8-16-25)19-9-14-23-12-5-6-17-26(23)29/h2-7,10-13,17-18,25H,8-9,14-16,19-21H2,1H3" 
XB8 InChIKey         InChI                1.06  KZOIYQAEEQKJSB-UHFFFAOYSA-N                                                                                                                                          
XB8 SMILES_CANONICAL CACTVS               3.385 "COc1cccc(CN(CCCc2ccccc2F)C3CCC3)c1OCc4ccccc4"                                                                                                                       
XB8 SMILES           CACTVS               3.385 "COc1cccc(CN(CCCc2ccccc2F)C3CCC3)c1OCc4ccccc4"                                                                                                                       
XB8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1OCc2ccccc2)CN(CCCc3ccccc3F)C4CCC4"                                                                                                                       
XB8 SMILES           "OpenEye OEToolkits" 2.0.7 "COc1cccc(c1OCc2ccccc2)CN(CCCc3ccccc3F)C4CCC4"                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           XB8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{N}-[3-(2-fluorophenyl)propyl]-~{N}-[(3-methoxy-2-phenylmethoxy-phenyl)methyl]cyclobutanamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XB8 "Create component" 2023-02-06 PDBE 
XB8 "Initial release"  2023-06-14 RCSB 
# 
